Hruf048666.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- -
- Assembly
- GCA_951394225.1
- Location
- OX596286.1:28050470-28057515[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9 2e+03 1.4 0.2 1 17 59 75 59 76 0.80 2 17 5.8e-05 0.013 17.8 1.0 1 23 167 189 167 189 0.98 3 17 2.9e-07 6.4e-05 25.0 2.5 1 23 194 216 194 216 0.98 4 17 2.5e-05 0.0055 18.9 4.3 1 23 222 244 222 244 0.97 5 17 5.9e-05 0.013 17.8 1.3 1 21 250 270 250 271 0.95 6 17 9.5e-07 0.00021 23.4 0.2 1 23 278 300 278 300 0.97 7 17 0.00073 0.16 14.3 0.1 1 23 451 473 451 473 0.98 8 17 7.5e-06 0.0016 20.6 6.5 1 23 479 501 479 501 0.96 9 17 1.3e-06 0.00029 22.9 1.6 1 23 507 529 507 529 0.98 10 17 2.7e-05 0.0059 18.8 0.7 1 23 535 558 535 558 0.95 11 17 0.0089 1.9 10.9 2.0 1 23 570 592 570 592 0.97 12 17 2.7e-06 0.00058 22.0 3.9 1 23 598 620 598 620 0.97 13 17 2e-06 0.00043 22.4 0.5 1 23 627 649 627 649 0.96 14 17 2.5e-06 0.00055 22.1 1.2 1 23 655 677 655 677 0.98 15 17 3.7e-07 8.2e-05 24.7 0.9 3 23 685 705 683 705 0.96 16 17 1.8e-05 0.004 19.4 0.1 1 23 711 733 711 733 0.99 17 17 0.017 3.6 10.0 0.6 1 23 738 761 738 761 0.97
Sequence Information
- Coding Sequence
- ATGGATCACctagaatataattttaatcgtATATGTCGTGCTTGTAAGTGTGAATCGCCGAATATGTGTTCAGTGTTCGAAAGAAACGAAGCAACAGGGCGGAATGCCCGATTTGACGAGATGCTAATGGCGTGTGCCTCTGTTCAGATAAATTCAAACGATGGACTGCCAGGATATATTTGTCAGAAATGTGTCAAGTCCTTGGTAGAAGCGTATGATTTTAAACAACAATGCGAAGCAACAGACTCTAGTTTACgagattttttaaaatcaaaaggAATCAAACAAGAACAGTCGCACACAAATCAAAATAATGATCAGGAACTACATAACCAATTACTGGATTTCACAGCTATGTACAGTGAATTACAAGCTAAAGCTGTTGAGGGGGCTGTTGGCGTTAAAGTCGACCCCGATTTTACAACCACCATAGATTGCGATGTTCAACTAAAAAGCAACAGGGATTACGTAGAAATAATtgataatgataaaataatatttacttgcAATGCATGCAACAAAGTATTCTATACTTTGGAAGGCTTGAAAAGTCACAAACGTGTTCATACCGGAGAGatgtataaatgtaatatttgtaataaagaaTACACGAGAGCCAACCATCTTCAACGACACATGGCGTCGCATGGAAGAAGAAAagttcatatttgtaaaatttgtaacaaaacgCTCACAAGGTTAGAACATTTAAAACGACATTTAATTACacatatgaaaaataaaccATTTCAATGCGAAATGTGCAAACGAGGATTCAACCGTTCAGAGCATCTAATGAATCACGTGAAAAGGTGTAAAGGTGATAAAATATACGCTTGCGAAGTATGCAATAAAGGCTTTACTAGAACAGACAGCCTTGAAGTGCATATGAGactacatgaaaataaaacaccaATTCTTCCTACGCTAGAAACATTAGACAACATCCATGAACATTATATAGAAGTAGACGATTATTCTGGAAAATCAGAATCTGAACATTCAGACGCCGACAATTTCTCCGATCACGATGATGGTAATGACGATCAAGATTGTTTCGAACCGCAAGTAGACATACTAGAAAATGCAGAAGAAGTTAAAATTGAACCTCGAGGTGAACAAACTACGGAAACCGAAGCCTTCCTAGCAGCTTTAACCGAAAAAAGTGATATAGAAAATTTCGATGACAACAACGATAATGAAAGCGACAGCGCTGATTCGGAATATTTACCAAATAGAGTTAataaacctaaaagaaaacgcGGGAGACCTCGCAaacataaaatcaaaattaagcGGGAAAGAAGAACTAGGATACCTAAAGTAGAACCAACGGATGAACCCGGTGAATTCCCTTGTACAACTTGTAATAAAGTCTTATCAACTGCAATTGGTTTAGAAATTCACAGTAGAAAACATAGCGGTTTAAAATTACACAACTGCAAAGTTTGCCAGAAGAAATTTACTAGATCCAATCACCTAAAACGACACATGATCATTCATTCAGAGCACAAACCCTACAATTGTACAATTTGTCCAAAAGCATTTTCACGTAGAGATCACATGGCCCAACACATGAAATTACACACTACCTCTAAAGAATTCGAATGTGAAATCTGTAAACGTCCGTTTGCAAGAGCAGAACACCTAGCCAAACACAAGGCTTCGAAACATAACATTGGAGTAAAGATAATGAATGAAAAGAAAtacaaatgtcatatttgtcTCAAAGGATTTACAACAGAAAAATACAGAGATGTCCATGTACGAGGGCATAACGGAGAGaagaaatataattgtaaagtGTGCGAGAAAACGTTTATTTCTAAATCGCATCTGACTGAACATATGAAATTTCATAATGAGCATTCGAAGAAATTCTTATGTTCTGAGTGCGGACAAAGGTTTATTAGGAACGATTATTTGGTTATTCATATGCGGCGACATCGTGGCGAAAAACCGTTCAAGTGTAAATATTGTGGCAAaggATTCCCTCGAACAACAGACCTTACAGTCCATGAACGCTACCATACGGGCGAAAAAACCCATTTATGTACGATTTGTGGTCGTGGTTTTGGTCGGGCTTATAATTTGACTGTACATATGCGAACTCATACCGGCGAAAAGCCTTACCAATGTACATATTGTGATGCAGCATTCGCTCAAGGCAACGATTTGAAAGCTCATGTTCGCAGACATACCGGCGAAAGATTCCAGTGTGATATCTGCACAGAGAGCTTTCTTATGGGGTATTTGCTCACCCAGCATAAGAGAACTATACACGGCATTCAGGTGGTTTCCAACATAAGAAGACTGCAACCCTACCAACCCGCACAACCACTCCCTCAAATTCAACCATCGGTACCACAACTACAACTCCCCGTCCCACTACACATAGTTCCAGTGTCGCAACTACCCCAAGTACCCGTCGTCGTTCCGGTATCGGTCATGCCCTCAGTGGTGCAAGCAATCACATCACCTGGTGTGTTACAAGCCTCTCAACAAGCATCGCTCGTTGAGTGA
- Protein Sequence
- MDHLEYNFNRICRACKCESPNMCSVFERNEATGRNARFDEMLMACASVQINSNDGLPGYICQKCVKSLVEAYDFKQQCEATDSSLRDFLKSKGIKQEQSHTNQNNDQELHNQLLDFTAMYSELQAKAVEGAVGVKVDPDFTTTIDCDVQLKSNRDYVEIIDNDKIIFTCNACNKVFYTLEGLKSHKRVHTGEMYKCNICNKEYTRANHLQRHMASHGRRKVHICKICNKTLTRLEHLKRHLITHMKNKPFQCEMCKRGFNRSEHLMNHVKRCKGDKIYACEVCNKGFTRTDSLEVHMRLHENKTPILPTLETLDNIHEHYIEVDDYSGKSESEHSDADNFSDHDDGNDDQDCFEPQVDILENAEEVKIEPRGEQTTETEAFLAALTEKSDIENFDDNNDNESDSADSEYLPNRVNKPKRKRGRPRKHKIKIKRERRTRIPKVEPTDEPGEFPCTTCNKVLSTAIGLEIHSRKHSGLKLHNCKVCQKKFTRSNHLKRHMIIHSEHKPYNCTICPKAFSRRDHMAQHMKLHTTSKEFECEICKRPFARAEHLAKHKASKHNIGVKIMNEKKYKCHICLKGFTTEKYRDVHVRGHNGEKKYNCKVCEKTFISKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCDICTESFLMGYLLTQHKRTIHGIQVVSNIRRLQPYQPAQPLPQIQPSVPQLQLPVPLHIVPVSQLPQVPVVVPVSVMPSVVQAITSPGVLQASQQASLVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229903;
- 90% Identity
- iTF_00767416;
- 80% Identity
- -