Hrub062363.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- OY720460.1:24615147-24622232[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 6.8e-05 0.017 17.8 1.0 1 23 172 194 172 194 0.98 2 16 7.1e-08 1.8e-05 27.2 2.5 1 23 199 221 199 221 0.98 3 16 3e-05 0.0076 18.9 4.3 1 23 227 249 227 249 0.97 4 16 6.9e-05 0.018 17.8 1.3 1 21 255 275 255 276 0.95 5 16 1.1e-06 0.00028 23.4 0.2 1 23 283 305 283 305 0.97 6 16 0.00061 0.16 14.8 0.1 1 23 456 478 456 478 0.98 7 16 8.9e-06 0.0022 20.6 6.5 1 23 484 506 484 506 0.96 8 16 1.6e-06 0.0004 22.9 1.6 1 23 512 534 512 534 0.98 9 16 3.2e-05 0.0081 18.8 0.7 1 23 540 563 540 563 0.95 10 16 0.011 2.7 10.9 2.0 1 23 575 597 575 597 0.97 11 16 3.2e-06 0.0008 22.0 3.9 1 23 603 625 603 625 0.97 12 16 2.3e-06 0.00059 22.4 0.5 1 23 632 654 632 654 0.96 13 16 3e-06 0.00076 22.0 1.2 1 23 660 682 660 682 0.98 14 16 4.4e-07 0.00011 24.7 0.9 3 23 690 710 688 710 0.96 15 16 2.2e-05 0.0055 19.3 0.1 1 23 716 738 716 738 0.99 16 16 0.02 5 10.0 0.6 1 23 743 766 743 766 0.97
Sequence Information
- Coding Sequence
- ATGGATCacttagaatatgattttaatcGTATATGTCGTGCTTGTAAGTGTGAATCGCCGAATATGTGTTCAGTGTTCGAAAGAAATGAAGCAACAGGGCGTAATGCCCGATTTGACGAGATGCTAATGGCGTGTGCCTCTGTTCAGATAAATTCGAATGATGGACTGCCAGGATATATCTGTCAGAAATGTGTCAAGTCCTTAGTAGAAGCGTATGATTTTAAACAACAATGCGAATCAACAGACACTAGTTTAcgagattttttaaaatcaaaaggAATCAAACAAGAACAATCACACACAAATCAAAATAATGATCAAGAACTACATAATCAGTTACTGGATTTCACAGCCATGTACAGTGAATTACAAGCTAAAGCAGTTGAGGGGACTGTTGTTGCCTCGGTTGTTGGCGTTAAAGTTGATCCCGATTTTTCAACCACCATAGACTGCGATGTTCAATTAAAAAGCAGCAGGGATTTCGTAGAAATAATTGataatgataaaataatatttacttgcAATGCATGTAACAAAGTATTTTATACTTTGGAGGGCTTGAAAAGTCACAAACGTGTTCATACAGGAGAGAtgtataaatgtaatatttgtaacAAGGAATATACAAGAGCTAGCCATCTTCAACGACACATGGCGTCCCATGGAAGAAGAAAAGttcatatttgtaaaatttgcaacaAAACACTCACAAGATTAGAACATTTAAAACGGCATTTAATTACacatatgaaaaataaaccatttcaatGTGAAATGTGCAAACGAGGATTCAATCGTTCAGAGCATCTAATGAATCATGTGAAGAGGTGTAAAGGTGATAAAATATACGCTTGCGAAGTATGCAATAAAGGTTTTACTAGAACAGACAGCCTTGAAGTGCATATGAGACTACATGAAAATAAAACACCAATTCTTCCTACTTTAGAAACATTAGACAACATCCATGAACATTATATAGAAGTGGACGATTATTCTGGAAAATCAGAATCCGAACATTCAGACGCCGACAATTTCTCCGACCACGATGATGGTAACGATGATCAAGATTGTTTCGAACCGCAAGTAGATATATTAGAAAATGCAGAAGAAGTTAAAATTGAACCACGAGGTGAACAAACTACTGAAACCGAAGCCTTCCTAGCAGCTTTAACCGAAAAAAGTGATATAGAAAATTTCGATGATAACAACGATAATGATAGCGACAGCGCTCATTCGGAATATTTACCAAATAGAGTTACTAAATCTAAAAGAAAACGCGGGAGACCTCgcaaacataaaatcaaaattaagcGGGAAAGAAGAACTAGAATACCTAAAGAAGAACCAACAGACGAACCCGGTGAATTCCCGTGCACAGTTTGTAATAAAGTGTTATCAACTGCAATTGGTTTAGAAATTCATAGTAGAAAACATAGTGGTTTAAAGTTACACAATTGCAAAGTTTGCCAAAAGAAATTTACTAGATCCAATCACCTAAAACGACACATGATCATTCATTCGGAGCACAAACCCTACAATTGTACAATTTGTCCAAAAGCATTTTCGCGTAGAGACCACATGGCCCAGCACATGAAATTACACACTACCTCTAAAGAATTTGAATGTGAAATCTGTAAACGTCCGTTTGCAAGAGCAGAACACCTAGCCAAACATAAGGCCTCGAAACATAACATTGGAGTAAAAATAATGaacgaaaagaaatataaatgcCACATTTGTCTCAAAGGATTCACGACAGAAAAATACAGAGACGTCCACGTGCGAGGGCATAACGGAGAGaagaaatataattgtaaaGTGTGCGAGAAaacttttatttctaaatcgCATCTCACTGAACATATGAAATTTCATAATGAGCATTCGAAGAAATTCTTATGTTCTGAGTGCGGACAAAGGTTTATTAGGAACGATTATTTGGTTATTCATATGCGGCGACATCGCGGCGAAAAGCCGTTCAAGTGTAAATATTGTGGCAAagGATTCCCTCGAACAACCGACCTTACAGTCCACGAACGCTACCATACGGGTGAAAAGACCCATTTATGTACGATTTGTGGACGTGGTTTTGGTCGAGCTTATAATTTAACTGTACATATGCGCACCCACACCGGCGAAAAGCCTTACCAATGTACATATTGTGATGCAGCATTCGCTCAAGGCAACGATTTGAAAGCTCATGTTCGCAGACATACGGGCGAAAGATTCCAATGTGATATCTGCACAGAGAGCTTTCTTATGGGGTACTTGCTCACGCAGCATAAGAGAACTGTGCACGGCATTCAGGTGGTATCCAACATAAGAAGACTGCAACCCTACCCGCCCCCACAACCACCCCCTCAACAAATTCCACAACAGGTACCACAGCAGCTACAACTCCCCGTCCCCCTACACATAGTCCCAGTGTCGCAACTACCCCAGGTGCCCGTCGTCGTGCCGGTATCGGTCATGCCCTCTGTGGTGCAGGCCATGACATCGCCTGGTGTGTTACAAGCCTCTCAACAAGCATCGCTCGTTGAGTGA
- Protein Sequence
- MDHLEYDFNRICRACKCESPNMCSVFERNEATGRNARFDEMLMACASVQINSNDGLPGYICQKCVKSLVEAYDFKQQCESTDTSLRDFLKSKGIKQEQSHTNQNNDQELHNQLLDFTAMYSELQAKAVEGTVVASVVGVKVDPDFSTTIDCDVQLKSSRDFVEIIDNDKIIFTCNACNKVFYTLEGLKSHKRVHTGEMYKCNICNKEYTRASHLQRHMASHGRRKVHICKICNKTLTRLEHLKRHLITHMKNKPFQCEMCKRGFNRSEHLMNHVKRCKGDKIYACEVCNKGFTRTDSLEVHMRLHENKTPILPTLETLDNIHEHYIEVDDYSGKSESEHSDADNFSDHDDGNDDQDCFEPQVDILENAEEVKIEPRGEQTTETEAFLAALTEKSDIENFDDNNDNDSDSAHSEYLPNRVTKSKRKRGRPRKHKIKIKRERRTRIPKEEPTDEPGEFPCTVCNKVLSTAIGLEIHSRKHSGLKLHNCKVCQKKFTRSNHLKRHMIIHSEHKPYNCTICPKAFSRRDHMAQHMKLHTTSKEFECEICKRPFARAEHLAKHKASKHNIGVKIMNEKKYKCHICLKGFTTEKYRDVHVRGHNGEKKYNCKVCEKTFISKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCDICTESFLMGYLLTQHKRTVHGIQVVSNIRRLQPYPPPQPPPQQIPQQVPQQLQLPVPLHIVPVSQLPQVPVVVPVSVMPSVVQAMTSPGVLQASQQASLVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229903;
- 90% Identity
- iTF_00769003; iTF_01104928; iTF_00029525; iTF_01275571; iTF_01226011; iTF_00470141;
- 80% Identity
- -