Pnig029682.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- -
- Assembly
- GCA_947425015.1
- Location
- OX380345.1:19554074-19557383[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 3.7e-05 0.0052 18.7 1.6 1 23 167 189 167 189 0.98 2 16 7.3e-07 0.0001 24.0 3.4 1 23 194 216 194 216 0.98 3 16 3.1e-05 0.0043 18.9 4.3 1 23 222 244 222 244 0.97 4 16 7.1e-05 0.01 17.8 1.3 1 21 250 270 250 271 0.95 5 16 1.1e-06 0.00016 23.4 0.2 1 23 278 300 278 300 0.97 6 16 0.0015 0.21 13.6 0.2 1 23 449 471 449 471 0.98 7 16 9.1e-06 0.0013 20.6 6.5 1 23 477 499 477 499 0.96 8 16 6.8e-07 9.6e-05 24.1 1.7 1 23 505 527 505 527 0.98 9 16 3.3e-05 0.0046 18.8 0.7 1 23 533 556 533 556 0.95 10 16 0.0035 0.5 12.4 0.4 1 23 568 590 568 590 0.97 11 16 2.5e-06 0.00035 22.4 4.9 1 23 596 618 596 618 0.97 12 16 2.4e-06 0.00034 22.4 0.5 1 23 625 647 625 647 0.96 13 16 3.1e-06 0.00043 22.1 1.2 1 23 653 675 653 675 0.98 14 16 4.5e-07 6.4e-05 24.7 0.9 3 23 683 703 681 703 0.96 15 16 2.2e-05 0.0031 19.4 0.1 1 23 709 731 709 731 0.99 16 16 0.044 6.2 9.0 0.5 1 23 736 759 736 759 0.96
Sequence Information
- Coding Sequence
- ATGGATCATTGTGACTATAATTTTAATCGTATATGTCGTGCATGTAAGTGTGAATCGCCCGATATGTGTTCTGTGTTCGAAAGAAACGAAGCAACAGGGCGGAATGCCCGATTTGACGAGATGCTAATGGCGTGCGCCTCTGTTCAGATAAATTCCAATGATGGGCTACCTGGATATATATGTCAGAAATGTATCAAGTCCTTATCAGATGCTTATGATTTTAAACAACAGTGCGAATCAACAGACTCTAGTTTACGAGACTATTTAAAATCAAAAGGAATCAAACAAGAACATTCTCATACAAATCAACATAATGACCAAGAGCTACATAATCAACTTCTGGATTTTAGTGCTATGTACAATGAGTTGCAAGCTAAAGCACAAGAAGGTACTGTTGGTGTCAAAATTGATCCTGATTTTACAGCCACCATAGATTGCGATGTTCAATTAAAAAGCAACAGAGACTACGTGGAAATCATCGACAATGATAAAATTATATTTACCTGTAATACATGTAGCAAAGTTTTTTATACATTGGAAGGCTTAAAGAGTCATAAAAGGATTCATACAGGTGAGATGTATAAATGTAACGTCTGCAATAAGGAATACACAAGATCAAACCACCTTCAAAGACATATGGCCTCCCATGGTCGACGAAAAGTCCACATCTGCAAAATTTGTAACAAGACTCTAACTAGATTAGAACAtctgaaacgtcatttaataacacatatgaagaacaaaccattccaatgtgaaatgtgtAAACGTGGATTCAACCGTTCTGAACACCTGATGAACCATGTGAAGAGATGTAAAGGTGATAAAATATATGCATGCGAAGTATGTAACAAAGGATTTACCCGGACGGACAGCCTTGAAGTTCATATGCGGTTACATGAAAACAAAACTCCAATTCTGCCCACATTGGAAACATTGGATAATATCCACGAGCACTACATTGAGGTTGATGATTATTCAGGAAAATCTGAATCCGAACATTCTGAAGCAGATAATTTCTCTGACCACGAAGACGGCGCCGATGGTGGTGATTGCTTTGAACCACAAGTTGACATTCTCGAAAATGCCGAGGAAGTTAAAATTGAACCTCGAGGAGATCAGACAACAGAAGAAGCTTTCCTAGCAGCTTTAACTGAAAAGAGTGACATTGAAAACTTTGATGATAACAACGACAATGATAGCGACAGTGCTCATTCTGAATACTTGCCAAATAGAGTTAGTAAACCCAAAAGAAAACGAGGCAGACCACGTAAACACAAAATTAAAATCAAGAGAGAAAGAAGAACTAGAATACCCAAAGAAGAAACAGATGAACCCGGCGAATTTCCTTGTTTGATTTGTCACAAAGTTTTGTCTACTGCAATTGGTTTAGAAATTCATAGTAGAAAACACAGCGGTTTGAAATTGCACAACTGCAAAGTTTGCCAGAAAAAATTCACTCGTTCTAATCACTTAAAACGCCATATGATAATTCATTCAGAACACAAGCCATATACGTGTACTATTTGTCCGAAAGCGTTTTCACGCAGAGATCACATGGCGCAGCACATGAAGTTACACACAGCCTCTAAGGAATTCGAATGTGAAATTTGCAAACGTCCATTTGCTCGTGCAGAGCATTTAGCTAAGCACAAAGCTTCAAAACATAACATCGGAGTCAAGATTATGAACGAGAAGAAATATAAATGCCCAATATGTCTAAAAGGATTTACAACAGAAAAATATAGGGACGTACATGTGCGAGGACATAATGGAGAAAAGAAATATAACTGCAAAACATGCGACAAGACGTTTATTTCCAAATCACATTTGACCGAACATATGAAATTCCACAATGAACATTCGaaaaagttcttgtgttctgaatgtggacaaagattcataagaaacgattatttggttattcatatgagacggcatcgtggcgaaaaaccattcaaatgtaaatactgcggaaaaggttttcctcgaacaaccgacttaacagtccatgagcgctaccacaccggagaaaaaactcacttgtgtacaatttgtggacgcggtttcggccgcgcatataatttgactgttcacatgagaacccatactggtgaaaagccgtaccagtgcacatattgtgatgcagcgttcgctcaaggcaacgatttaaaagctcacgtacgcagacataccggggaaaggttccagtgcgatatttgtacagaaagcttcctcatgggctacttgctcaCCCAGCACAAGAGGAGCGTCCATGGTTTACAGGTAGTGTCCAACATCAGAAGACTACAACCATTCCCACCACCGCAACCACCACCCTTACAACCGCAGCCAATACAGCAGCAGCTTCAATTACCCGTCCCACTGCACGTGTTACCAGTGCCACAGATACCAGTCGTAGTATCTTCATTGCCATCGGTGGTGTCTTCAGTGGTCCCATCCATCGCACCACCCACCGTGCTACAACCGCCTCAACAGCCATCTCTGGTAGAGTGA
- Protein Sequence
- MDHCDYNFNRICRACKCESPDMCSVFERNEATGRNARFDEMLMACASVQINSNDGLPGYICQKCIKSLSDAYDFKQQCESTDSSLRDYLKSKGIKQEHSHTNQHNDQELHNQLLDFSAMYNELQAKAQEGTVGVKIDPDFTATIDCDVQLKSNRDYVEIIDNDKIIFTCNTCSKVFYTLEGLKSHKRIHTGEMYKCNVCNKEYTRSNHLQRHMASHGRRKVHICKICNKTLTRLEHLKRHLITHMKNKPFQCEMCKRGFNRSEHLMNHVKRCKGDKIYACEVCNKGFTRTDSLEVHMRLHENKTPILPTLETLDNIHEHYIEVDDYSGKSESEHSEADNFSDHEDGADGGDCFEPQVDILENAEEVKIEPRGDQTTEEAFLAALTEKSDIENFDDNNDNDSDSAHSEYLPNRVSKPKRKRGRPRKHKIKIKRERRTRIPKEETDEPGEFPCLICHKVLSTAIGLEIHSRKHSGLKLHNCKVCQKKFTRSNHLKRHMIIHSEHKPYTCTICPKAFSRRDHMAQHMKLHTASKEFECEICKRPFARAEHLAKHKASKHNIGVKIMNEKKYKCPICLKGFTTEKYRDVHVRGHNGEKKYNCKTCDKTFISKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCDICTESFLMGYLLTQHKRSVHGLQVVSNIRRLQPFPPPQPPPLQPQPIQQQLQLPVPLHVLPVPQIPVVVSSLPSVVSSVVPSIAPPTVLQPPQQPSLVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229903;
- 90% Identity
- iTF_00767416;
- 80% Identity
- -