Pcup022624.1
Basic Information
- Insect
- Poecilus cupreus
- Gene Symbol
- -
- Assembly
- GCA_963942605.1
- Location
- OZ012719.1:3553606-3557803[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.1 1.7e+03 1.3 0.3 1 17 59 75 59 76 0.87 2 17 1.1e-05 0.0021 20.0 1.7 1 23 167 189 167 189 0.98 3 17 2.7e-07 5.2e-05 25.0 2.5 1 23 194 216 194 216 0.98 4 17 2.4e-05 0.0045 18.9 4.3 1 23 222 244 222 244 0.97 5 17 5.5e-05 0.01 17.8 1.3 1 21 250 270 250 271 0.95 6 17 8.9e-07 0.00017 23.4 0.2 1 23 278 300 278 300 0.97 7 17 0.00027 0.051 15.6 0.1 1 23 450 472 450 472 0.98 8 17 7e-06 0.0013 20.6 6.5 1 23 478 500 478 500 0.96 9 17 5.2e-07 0.0001 24.1 1.7 1 23 506 528 506 528 0.98 10 17 2.5e-05 0.0049 18.8 0.7 1 23 534 557 534 557 0.95 11 17 0.0027 0.52 12.4 0.4 1 23 569 591 569 591 0.97 12 17 1.9e-06 0.00036 22.4 4.9 1 23 597 619 597 619 0.97 13 17 1.9e-06 0.00035 22.4 0.5 1 23 626 648 626 648 0.96 14 17 2.4e-06 0.00045 22.1 1.2 1 23 654 676 654 676 0.98 15 17 3.5e-07 6.7e-05 24.7 0.9 3 23 684 704 682 704 0.96 16 17 1.7e-05 0.0033 19.4 0.1 1 23 710 732 710 732 0.99 17 17 0.034 6.5 9.0 0.5 1 23 737 760 737 760 0.96
Sequence Information
- Coding Sequence
- ATGGATCATTGTGACTATAATTTTAATCGTATATGTCGTGCATGTAAGTGTGAATCGGCCAATATGTGTTCTGTGTTCGAAAGAAACGAAGCAACAGGGCGGAATGCCCGATTTGACGAGATGCTAATGGCGTGCGCCTCTGTTCAGataaattccAATGATGGTCTACCAGGATATATCTGTCAGAAATGTATCAAGTCATTATCAGATGCTTATGATTTCAAACAACAGTGTGAATCTACAGACTCCAGTTTACgggattatttaaaatcaaaaggAATCAAACAAGAGCAATCGCACACAAATCAGCATAATGACCAAGAGCTACATAATCAACTACTGGATTTCAGTGCTATGTACAATGAGCTACAAGCAAAGGCTGTGGAAGGTGCTGTTGGAGTCAAAGTTGACCCAGATTTTACAGCCACCATAGATTGCGAAGTTCAACTAAAGAGCAATAGAGATTACGTAGAGATCATCgacaatgataaaattatattcacatGTAACACATGTAATAAAGTTTTTTATACATTGGAAGGGTTGAAAAGTCACAAAAGAATTCATACAGGCGAAATGTACAAATGTAACATCTGTAATAAAGAATACACCAGAGCGAACCACCTTCAACGACACATGGCCTCTCATGGTCGCAGAAAAGTTCACATCTGTAAAATTTGCAACAAGACTCTAACTAGATTAGAACATCTTAAGCGTCATTTAATTACTCacatgaaaaataaaccattCCAATGTGAAATGTGTAAGCGTGGATTTAACCGTTCAGAACATTTGATGAATCATGTAAAAAGATGTAAAGGCGACAAAATATACGCATGTGAAGTATGTAATAAAGGATTCACCCGGACAGACAGTCTCGAGGTTCATATGCGGTTACACGAAAACAAGACTCCAGTTCTACCAACTTTGGAAACATTGGACAATATCCACGAACATTACATTGAAGTGGATGATTACTCAGGAAAATCAGAATCCGAACATTCAGACGCAGACAATTTCTCTGATCATGAAGATGGCGCTGATGATCAAGATTGTTTTGAACCGCAAGTTGACATTTTGGAAAACGCGGAAGAAGTTAAAATTGAACCTCGAGGTGATCAAACAACAGAAGAAGCCTTCCTAGCAGCTCTAACAGAGAAAAGTGATATTGAAAATTTCGATGATAACAATGACAATGATAGCGACAGTGCTCATTCTGAATACTTGCCAAATAGAGTTAGTAAACCCAAAAGAAAACGAGGCAGACCTCGTAaacataaaatcaaaataaagagAGAAAGAAGAACTAGAATACCCAAAGAAGAGAAGACGGACGAACCTGGCGAATTTCCTTGTACGATTTGTAACAAAGTTTTATCAACTGCAATTGGTTTAGAAATTCATAGTAGAAAACATAGCGGTTTGAAATTGCACAACTGTAAAGTTTGTCAGAAAAAATTCACCCGCTCTAATCACCTAAAACGCCATATGATAATACATTCAGAACACAAACCCTACACATGTACTATTTGCCCGAAGGCGTTTTCGCGGCGAGATCACATGGCTCAGCACATGAAGCTACACACAGCATCTAAAGAGTTCGAGTGTGAAATTTGCAAACGTCCATTTGCTCGCGCAGAACATCTAGCTAAGCACAAAGCTTCGAAGCATAACATCGGAGTCAAGATAATGAACGAGAAGAAATATAAATGCCCCATATGCCTAAAAGGATTTACAACGGAAAAATACAGAGACGTACATGTGCGGGGACATAATGGAGAAAAGAAATACAACTGCAAAACATGCGATAAAACTTTCATTTCTAAATCGCATTTAACTGAACATATGAAATTCCACAACGAACATTCTAAAAAGTTCTTGTGTTCTGAATGTGGACAAAGGTTCATTAGGAACGATTATTTGGTTATTCATATGAGGCGGCATCGTGGTGAAAAGCCATTCAAATGTAAATACTGCGGAAAAGGTTTTCCCCGAACAACCGACCTGACGGTCCACGAGCGATACCATACAGGAGAAAAGACCCATTTATGTACGATTTGCGGCCGTGGTTTCGGCCGAGCGTACAATCTAACTGTACATATGCGAACTCATACAGGCGAAAAGCCATATCAGTGTACATATTGCGATGCAGCATTTGCCCAGGGTAACGACTTGAAAGCCCATGTTCGCAGACATACCGGAGAACGGTTCCAATGCGATATTTGTACGGAGAGCTTCCTCATGGGCTACTTGCTCACCCAACACAAACGGAGCGTTCATGGCATACAGGTGGTGTCGAACATCAGAAGACTGCAGCCATTCCCACCACCACAGCCACCGCCGCAACAACCACCGCAAGTACCGCAGCAGCTTCAATTACCCGTCCCAATACACGTGTTGCCGGTGCCCCAGGTACCAGTAGTAGTACCTTCATTACCAACGGTGGTGACCTCAGTAGTGCCATCAATCGTACAAGCCACCGTATTGCAACCATCGCAACAGCCGTCTCTGGTAGAGTGA
- Protein Sequence
- MDHCDYNFNRICRACKCESANMCSVFERNEATGRNARFDEMLMACASVQINSNDGLPGYICQKCIKSLSDAYDFKQQCESTDSSLRDYLKSKGIKQEQSHTNQHNDQELHNQLLDFSAMYNELQAKAVEGAVGVKVDPDFTATIDCEVQLKSNRDYVEIIDNDKIIFTCNTCNKVFYTLEGLKSHKRIHTGEMYKCNICNKEYTRANHLQRHMASHGRRKVHICKICNKTLTRLEHLKRHLITHMKNKPFQCEMCKRGFNRSEHLMNHVKRCKGDKIYACEVCNKGFTRTDSLEVHMRLHENKTPVLPTLETLDNIHEHYIEVDDYSGKSESEHSDADNFSDHEDGADDQDCFEPQVDILENAEEVKIEPRGDQTTEEAFLAALTEKSDIENFDDNNDNDSDSAHSEYLPNRVSKPKRKRGRPRKHKIKIKRERRTRIPKEEKTDEPGEFPCTICNKVLSTAIGLEIHSRKHSGLKLHNCKVCQKKFTRSNHLKRHMIIHSEHKPYTCTICPKAFSRRDHMAQHMKLHTASKEFECEICKRPFARAEHLAKHKASKHNIGVKIMNEKKYKCPICLKGFTTEKYRDVHVRGHNGEKKYNCKTCDKTFISKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCDICTESFLMGYLLTQHKRSVHGIQVVSNIRRLQPFPPPQPPPQQPPQVPQQLQLPVPIHVLPVPQVPVVVPSLPTVVTSVVPSIVQATVLQPSQQPSLVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229903;
- 90% Identity
- iTF_00767416;
- 80% Identity
- -