Basic Information

Insect: Leistus spinibarbis
Gene Symbol: -
Assembly: GCA_933228875.1
Location: CAKOGB010000658.1:62286-64830[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.1 3.4e+02 2.4 0.2 1 15 59 73 59 76 0.76

2 15 5.7e-06 0.00048 20.8 1.6 1 23 171 193 171 193 0.98

3 15 6.6e-07 5.5e-05 23.8 3.5 1 23 198 220 198 220 0.98

4 15 1.9e-05 0.0016 19.2 4.3 1 23 226 248 226 248 0.97

5 15 2.7e-05 0.0022 18.7 0.9 1 21 254 274 254 275 0.95

6 15 7e-07 5.8e-05 23.7 0.2 1 23 282 304 282 304 0.97

7 15 0.00013 0.011 16.5 0.4 1 23 448 470 448 470 0.98

8 15 3.6e-06 0.0003 21.5 6.4 1 23 476 498 476 498 0.97

9 15 3.6e-07 3.1e-05 24.6 1.0 1 23 504 526 504 526 0.98

10 15 4.5e-06 0.00038 21.1 0.6 1 23 532 555 532 555 0.96

11 15 0.0025 0.21 12.5 1.0 1 23 567 589 567 589 0.98

12 15 2.2e-06 0.00018 22.2 5.0 1 23 595 617 595 617 0.97

13 15 1.5e-06 0.00012 22.7 0.5 1 23 624 646 624 646 0.96

14 15 1.9e-06 0.00016 22.4 1.2 1 23 652 674 652 674 0.98

15 15 1.7 1.4e+02 3.6 0.2 3 10 682 689 680 691 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.1	3.4e+02	2.4	0.2	1	15	59	73	59	76	0.76
2	15	5.7e-06	0.00048	20.8	1.6	1	23	171	193	171	193	0.98
3	15	6.6e-07	5.5e-05	23.8	3.5	1	23	198	220	198	220	0.98
4	15	1.9e-05	0.0016	19.2	4.3	1	23	226	248	226	248	0.97
5	15	2.7e-05	0.0022	18.7	0.9	1	21	254	274	254	275	0.95
6	15	7e-07	5.8e-05	23.7	0.2	1	23	282	304	282	304	0.97
7	15	0.00013	0.011	16.5	0.4	1	23	448	470	448	470	0.98
8	15	3.6e-06	0.0003	21.5	6.4	1	23	476	498	476	498	0.97
9	15	3.6e-07	3.1e-05	24.6	1.0	1	23	504	526	504	526	0.98
10	15	4.5e-06	0.00038	21.1	0.6	1	23	532	555	532	555	0.96
11	15	0.0025	0.21	12.5	1.0	1	23	567	589	567	589	0.98
12	15	2.2e-06	0.00018	22.2	5.0	1	23	595	617	595	617	0.97
13	15	1.5e-06	0.00012	22.7	0.5	1	23	624	646	624	646	0.96
14	15	1.9e-06	0.00016	22.4	1.2	1	23	652	674	652	674	0.98
15	15	1.7	1.4e+02	3.6	0.2	3	10	682	689	680	691	0.84

Sequence Information

Coding Sequence: ATGAATCATTTAGAATATGATTTCAATCGTATATGTCGTGCATGTAAGCGTGAATCGTCGGATTTGTGTTCAGTGTATGAAATAAACGAAGCAACAGGGCGGAATGCCCGACTTGACGAGATGCTAATGGCGTGCGCCTCTGTTCAGATACATTCGGACGATGGCCTGCCAGGATATATTTGTCATAAGTGTGTCAAAGTATTGAACCTTGCGTACGAATTTAAGCAAATATGCGAAACAACTGACACGAGTTTACGTGACTATTTAAAGGCGAAAGGGATCAAACAAGAGAATACACACGTGAATCAGAGCAATGATCAAGAATTGCACAGTCAATTGTTGGATTTCAACGCGATGTACAACGAACTACAACAAAAAGTTACGGAGTCGGTTGTTGGAGTCAAAGTGGATCCAGATTTTGCGGCCACCGTAGTGGAGTGCAGTGTTGACACAGTAGCCCTGAAAAGTAATCGAGATTATGTTGAAATTATCGATAACGATAAAATAATTTTCACATGTAATACGTGCAACAAAGTGTTTTACACCTTAGATGGTTTACGGAGTCATAAAAGAATCCATACAGGAGAAATGTTTAAATGTAATGTTTGTAATAAAGAGTACACGAGATCAAACCATTTGCAACGACACATGGCTTCGCATGGCCGTAGAAAAGTGCACATTTGTAAAATTTGTAATAAAACTCTGACAAGATTAGAACATTTGAAGAGGCATTTGATAACGCACATGAAAAACAAACCGTATCAATGCGAAATGTGTAAGCGGGGATTTAATCGCTCGGAGCATTTAATTAACCACGTAAAACGTTGCAAAGGCGATAAAATATACGCCTGTGAAGTGTGCAACAAGGGCTTCACTCGCACAGATAGTTTAGAAGTCCATATGCGACTTCATGACAACAAAGCTCCGGTTCTACCGACAATCGAAACACTGGACAACATCCACGAGCACTACATAGAAGTAGACAATTATTCGGGAAAATCCGAATCGGAGCATTCGGACGCCGATAACTTTTCGGATCATGATGATGGAGCGGACGACAATCAAGATTGTTTCGAGCCGCAAGTGGACATCCTAGAGAACGCCGATGAGGTGAAAATCGAGCGTAACGAGACGACCGATGAAACATTCCTAGCAGCGCTAGCGGAAAAAAGTGATATCGAAAATTATGAAGATAGCGACAGCGCGCATTCGGAGTATTTGCCAAATCGGGCAAAACCGAAAGGACGAAAACGTGGACGACCGCGAAAACATAAACTAAAAATCAAACGAGAGCGTAAAGAAAGGGCGGTTAAACAAGAGAATTATGATGAACCAGGTGAATTCCCTTGTTGTATTTGCAATAAAGTACTTTCCACTGCAGTTGGACTAGAAATTCACACGCGTAAACACAGCGGATTAAAACTGCATAGTTGCAAAGTTTGCCAAAAGAAATTTACTCGCTCGAATCATTTGAAACGCCACATGATTATACACTCTGAGCACAAACCTTACCCTTGTAATATCTGTCCGAAAGCGTTCACGCGGCGAGATCATATGGCCCAACATATGAAGCTTCATACACTCTCGAAAGAGTTTGAATGCGACATATGTAAACGGCCATTTACAAGGGCAGAGAATCTAGCGAAGCATAAATCATCGAAACATAACATTGGACAAAAGATTATGAATGAAAAGAAGTTTAAATGTTCGGTTTGTTTGAAAGGGTTCACGACGGAGAAGTACAGAGATGTTCATATGCGCGGCCATTCTGGGGAGAAGAAGTTCAATTGTAAAACGTGCGATAAAACCTTTATATCGAAGTCGCATTTGACGGAACATATGAAGTTTCACAATGAACACTCGAAGAAGTTCCTGTGCTCGGAATGCGGCCAGAGATTCATCAGGAACGATTATTTGGTTATACATATGAGACGACATCGTGGCGAGAAACCGTTCAAATGCAAGTATTGCGGCAAAGGTTTCCCTCGAACAACAGATCTGACAGTGCATGAACGTTATCATACTGGTGAAAAAACGCATCTGTGCACAATTTGCGGCAGAGGTTTCGGAAGGTAA
Protein Sequence: MNHLEYDFNRICRACKRESSDLCSVYEINEATGRNARLDEMLMACASVQIHSDDGLPGYICHKCVKVLNLAYEFKQICETTDTSLRDYLKAKGIKQENTHVNQSNDQELHSQLLDFNAMYNELQQKVTESVVGVKVDPDFAATVVECSVDTVALKSNRDYVEIIDNDKIIFTCNTCNKVFYTLDGLRSHKRIHTGEMFKCNVCNKEYTRSNHLQRHMASHGRRKVHICKICNKTLTRLEHLKRHLITHMKNKPYQCEMCKRGFNRSEHLINHVKRCKGDKIYACEVCNKGFTRTDSLEVHMRLHDNKAPVLPTIETLDNIHEHYIEVDNYSGKSESEHSDADNFSDHDDGADDNQDCFEPQVDILENADEVKIERNETTDETFLAALAEKSDIENYEDSDSAHSEYLPNRAKPKGRKRGRPRKHKLKIKRERKERAVKQENYDEPGEFPCCICNKVLSTAVGLEIHTRKHSGLKLHSCKVCQKKFTRSNHLKRHMIIHSEHKPYPCNICPKAFTRRDHMAQHMKLHTLSKEFECDICKRPFTRAENLAKHKSSKHNIGQKIMNEKKFKCSVCLKGFTTEKYRDVHMRGHSGEKKFNCKTCDKTFISKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01229903;
90% Identity: iTF_01041084;
80% Identity: -