Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: Rreb1
Assembly: GCA_963924545.1
Location: OZ004693.1:4514714-4519442[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.4e-05 0.0044 19.0 1.2 1 23 56 78 56 78 0.99

2 16 0.0002 0.02 16.9 0.3 1 23 91 113 91 113 0.98

3 16 0.00012 0.012 17.6 6.4 1 23 119 141 119 141 0.98

4 16 0.079 8 8.7 0.1 1 23 204 228 204 228 0.88

5 16 0.12 12 8.1 1.2 2 23 234 256 234 256 0.96

6 16 1.8 1.8e+02 4.5 1.2 1 19 302 320 302 323 0.90

7 16 0.14 14 8.0 0.1 1 23 452 474 452 474 0.96

8 16 9.4e-05 0.0096 17.9 1.9 1 23 483 505 483 505 0.98

9 16 0.0016 0.16 14.1 3.1 1 23 511 534 511 534 0.97

10 16 0.00095 0.096 14.8 3.0 1 23 931 954 931 954 0.97

11 16 0.00095 0.097 14.8 0.4 2 23 1171 1192 1170 1192 0.97

12 16 0.24 25 7.2 6.3 1 23 1198 1221 1198 1221 0.97

13 16 0.024 2.4 10.4 1.2 1 20 1251 1271 1251 1272 0.95

14 16 0.27 28 7.0 1.0 1 23 1332 1355 1332 1355 0.95

15 16 0.032 3.2 10.0 0.4 3 23 1402 1422 1400 1422 0.93

16 16 0.014 1.5 11.0 5.9 1 23 1428 1450 1428 1450 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.4e-05	0.0044	19.0	1.2	1	23	56	78	56	78	0.99
2	16	0.0002	0.02	16.9	0.3	1	23	91	113	91	113	0.98
3	16	0.00012	0.012	17.6	6.4	1	23	119	141	119	141	0.98
4	16	0.079	8	8.7	0.1	1	23	204	228	204	228	0.88
5	16	0.12	12	8.1	1.2	2	23	234	256	234	256	0.96
6	16	1.8	1.8e+02	4.5	1.2	1	19	302	320	302	323	0.90
7	16	0.14	14	8.0	0.1	1	23	452	474	452	474	0.96
8	16	9.4e-05	0.0096	17.9	1.9	1	23	483	505	483	505	0.98
9	16	0.0016	0.16	14.1	3.1	1	23	511	534	511	534	0.97
10	16	0.00095	0.096	14.8	3.0	1	23	931	954	931	954	0.97
11	16	0.00095	0.097	14.8	0.4	2	23	1171	1192	1170	1192	0.97
12	16	0.24	25	7.2	6.3	1	23	1198	1221	1198	1221	0.97
13	16	0.024	2.4	10.4	1.2	1	20	1251	1271	1251	1272	0.95
14	16	0.27	28	7.0	1.0	1	23	1332	1355	1332	1355	0.95
15	16	0.032	3.2	10.0	0.4	3	23	1402	1422	1400	1422	0.93
16	16	0.014	1.5	11.0	5.9	1	23	1428	1450	1428	1450	0.98

Sequence Information

Coding Sequence: ATGGAAGCATCGCCCTCGCCGAAACCGATAACCAAAGAGGCCTTAGCCAATCGCAGCGACTCGGGCATCTTCTCGTCAACCACCAACACCACCATCGACCAGACCGATTTCTCCAAAAACTCCGACTCGGACAACCGCAGCGACTGTTCATCGCCAGAGAGAAAGTACGTCTGCCCAATCTGCAATCGGATGCTGACCTCCCAACACGAGTTCACACTGCATATTCGCTCGCACAACAACGAAAACGAGGTTCAGGACTCCGAGAAAGGCTACACCTGCAGGATATGTCAGAAGGTTCTGAGCTCGAATAGCAGCTTGGACCGCCACGTGCTGGTGCACAGTGGAGAGCGTCCCTTCCATTGCAAATACTGCGGAGATACTTTCACGACCAACGGGAACATGCACAGGCACATGAGGACTCACTCCCATAAGGCGGAGAACAACTACGAGTCAGACGGAAGCACCGATAGCAGTAGTTCCAAGAGTACCGAGTTTAACAACAATAAAGTGGAAAAAATCAACAGCAGCAAGAGGAAAAACGACAGCCCCGATGGTAGCAGTAAAAAGCTACGCGACAACTCCAGCAGCGACAGCGAGACATCGCAATCTTTTAAATGTCCCGTGTGCGAGAGATCAGACTTCAACTCCCTGTCTAACCTGGAAGCTCACTTGGAAGACAATCACCCGGAATACCCCGCCAAATGCAACCAATGCAATCAAATTTTCCTCAATAACAAACAGTTAACTCTGCACAAAGCTACGGTCCACGAAAATAACATTTCCCGACATTCCGTCGTCGGTTTCAAAGACCTTACCTTCGTCGACTTTTCAAGCGAGAAGTTCCCCCACATCGCTAGAAGGGAATGCGAGATCAACCTCCACAAGGTGTCTGGTGGGTTGAAATTCCAATGCAGGAAGTGTACCAGAGCATTCCCTTGCAATAACTCGCTAGAAATCCACGAGACAAGCTGTGTTTCAGTGGAAAGTCATAACGGACTGGACTTCACTACGATTTCTCAACCGGAAATTAGACGCATGGAGTTCTTTTCCAGGCTCAATCTGTTAAATACTTCACCAGAGAAGCAGTCCCCGCCGCCTCAGCTAAACAAAACTCCCAATAAGCTGCGGGAGCACTTGGCCAAAGCGATGGACAACACCAAAGACTTAGCTGACATCCAATCTATCTTATCCAACATCAACCTTCAACAGCTTCAAGCCAAGCAAAGCGAACTGAGACTCCCGACTCCTAAATCGCAGATGGAACAGCCTTCCGACTTTCCGAAGATTGAACAGGAAGAGGAATCTCAAGATTTGTTTGCCGTGGAATTTCGAAAGATGAAATTAAGGGGCGAGTTCCCTTGTAGGCTCTGCACAGCAGTCTTCCCCAACCTGCGAGCGCTGAAAGGGCACAACCGCGCCCATCTTAATGGTAACACCAACGGTACTTATCACTGCAACATGTGTCCCCATTCATCCATCGACAAAGCAGCCTTGATCAGGCATATGCGTACCCACAATGGAGATAGGCCATACGAGTGTTCCTTATGCAACTACGCCTTTACCACCAAAGCCAACTGTGAGAGGCATCTGAGGAATAGGCACGCAAAAACCACGCGGGAAGAAGTGAAAAAATCAATCATTTATCATCCATCGGAAGACCCCACTAACGAAGACCTGAATAAATTAGCAGCTAAAGAAGAACCAAAGAAATTGAATATACCGTCATCCTCAGAGGCAAAGGACTTATCTACAGATAAGATGATATGCTCGACGCCAAAGATCACCGACACCTTACGAAACCACGTGACTGAAATAAAACCAGAAATGAATTTACTGAAGCCGAACATAGCATCCCTGGGTCAAGAGATGCCTGTCCTTAGACCTCAAAAGATTTTCCCTAATATCGACATTATTCGGAACCAAAATCTTAAATCTTTCAAGGAACAAAAAATGTTACAGAACGGGGTAATTCCAATGCTACAACCTAATTTCAGTTTTACTCAACAAAAAATCCAAGTTAAAAGTTTAGATGCTTTAAAAGAGAACGTGTATGATAACGACTCAGATGAGGAATACATGGAGGAAGAAGAACAGCCTATGGACCTAGTTTTGGATTTGAGCAAGAAGAAATGCGAGGAGGACACCTACCGCAGCCAAGAAGAGTTACCACAAGATTTAACAAAGAAAACGCCTCCTCCTCCTCCAAGTCCCGTAACTCCTCAGTTGCCTCCTAATATGGGCGAGTTGTTTGCTCAACAGCTTCTCAAAACCCCACCAAAAATAGATCCAGCCGCCTTATACGCAACACAATTGGCTCACTTATATCGAAGCGGCTTCCCTGCTTTGTCCAACTGGACGGGATTTCCTCTAAACCCTTTATTTCCAGCAATAGCACCCACTTTACTCCAAAATTCGCAGGATCTTAAAGAGCGTATGCAGAGGTTCCAATTATGTGGTGGATCCATGATCGCCGAGGATTTAAAAAACCTGCAGAATCTGCAAAACTTGCATCAACAATCTCTACGCAGCCCAGCCACCAACTACAATGGGTTTAAGATAGAACCAAagtcagaaataaaaaatttctccaCGCCAAAGAGGCCGGAAGATTTGAAACCACTGAGTCTCAATATAGAGACGAGCTTTGTGGAAAACACAGCGGCAAAGCTGCAGAGTCCGATACCTCAAATTAAAGACTTGATGCCATCCCCTAATTCCGTAAAAATGGTGATAAAGAATGGCGTGCTAATGCCGAAACAGAAACAAAGAAGATACAGGACCGAGCGGCCCTTTACCTGCGAGCACTGCTCAGCTAGGTTCACTTTGAGGTCGAACATGGAAAGACACATCAAGCAGCAACACCCTCAATTCTGGTCCCAACGGCAGAGAGGCAGCGTTGGCAATCCTGGCCGCAAAGCGCAGTGTTTGCCCATCAAACCGAGTTATTGCGATCTCAGCATTCCAAGCTACGAAGTGTCAAAAACTCAAGAGTACAACGATACCAAAGAACTACTAAATGAAAAAATCAAGCTGGCCATTTTGGAGCAGCACCTTCGAGCAAACCAAAATATCAACCAAGACGTAAAAAAGGACGACGATGAGGACTGCGAACTCGTCATAGATGAAAACGAAGAGAATCCCGAACCAAAGACTGAAGAAACCAGCCAAAGAAGGGAATACGAGAGAAGCCGAATTCTGGAAGAGAAGCTGAAAGAACTGCACCAGTTCAAATCTGAagttaaacatataaaaaacgAGGAGAATCAGGATCTGGTGCCGGTCGCCAGGCTCCTCGATAACGCCTCCCAGCAACAATTCAAAGAATACTTTAAGAGAGAAGGTGAAGAAGCAGAAGTTGGAGGTGCGAGTGATGAAGACGAAGAAGGTCTGGTGGCCAGTGGCAGCACCAGCGAGGGGAACGTTTCTGGTACAGATGAAAACAGatCAGAATCCGAGACAACTCAGCCGGTGAAGAAGAAATCAGCATATTCCTTGGCGCCCAATCGCGTAAGCTGTCCGTATTGCAGCCGCAAATTCCCATGGACTTCCTCCCTGCGCAGGCACATCCTGACCCACACCGGTCAAAAACCGTTCAAATGCAGCCACTGTCCCCTCCTCTTCACCACAAAATCCAACTGCGACCGTCACTTGTTGCGCAAGCACGGCAACGCAGCTACGACCATCACTAACGATaccagcaacaacaacaacaacgccAACTACTTGATGAGAAATGTGCCAGAGCGCCCTTTCAAGTGCTCCAACTGCCCTAGCAGTACCTTCTCGACCTACTCAAACCTGAAAAAGCACATCAGCTGCAAGCACTCCACCAATGCCCAAGGGGATGACATTAAGGCTCAGGGATACGAAGCTGGCAGCTCTGAAGACGAAAAAATCCCCACAACGGACGCGAAAAGCGACTGGGAAAGCCAGCTGGCATACAGCAAGTTGAATGTGGACTTATCCCAGACTGTGCAAAACTCCGATCTGCCATTTAAATGTCACCTGTGCGAGGGCTCGTTTTCAGAACGCCAGGACGCGTTGGATCATATAAAAGAGAGACACGCTTCCGAATACGACCTGCTGATGTCCAAGAACGCTCTGGATACCAACGCCACCACTCCCGATGACGCCGCACATCAGGATGACGACGAGAGCGAGATTCGCGGCAAGTTCCCCGACTATTCCAACCGCAAGGTGATCTGCGCGTTTTGCATGCGCAGGTTCTGGTCTGCCGAGGACTTACGTCGTCACATGCGTACGCATACCGGCGAACGGCCCTTCAGCTGCGACATATGCCGGCGCAGGTTCACGTTGAAGCATAGCATGCTGCGGCACAGGAAgaaacataacctcaacttcGAGAACGACACCAACAACAGCGACGAAGACGGGAATAACGTTTCGCCGACGTTCGACAAGGCATCGAAAGAGAGCAGTTCAACGCACAAAAGTGAAAAAACGGACGAATCTGACGGCACCGAGGGCGGAGATCTGATAAGCAACCTCTTGGGGCTAAGGGACAGGTCCATTATAGATAAGGTTTTTGAAACAGCTTCAGCAGACGATGCTGCGAAGCTGCTAGGGGTTAAAAATGGGGTTAAAGAATAG
Protein Sequence: MEASPSPKPITKEALANRSDSGIFSSTTNTTIDQTDFSKNSDSDNRSDCSSPERKYVCPICNRMLTSQHEFTLHIRSHNNENEVQDSEKGYTCRICQKVLSSNSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHSHKAENNYESDGSTDSSSSKSTEFNNNKVEKINSSKRKNDSPDGSSKKLRDNSSSDSETSQSFKCPVCERSDFNSLSNLEAHLEDNHPEYPAKCNQCNQIFLNNKQLTLHKATVHENNISRHSVVGFKDLTFVDFSSEKFPHIARRECEINLHKVSGGLKFQCRKCTRAFPCNNSLEIHETSCVSVESHNGLDFTTISQPEIRRMEFFSRLNLLNTSPEKQSPPPQLNKTPNKLREHLAKAMDNTKDLADIQSILSNINLQQLQAKQSELRLPTPKSQMEQPSDFPKIEQEEESQDLFAVEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNTNGTYHCNMCPHSSIDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKTTREEVKKSIIYHPSEDPTNEDLNKLAAKEEPKKLNIPSSSEAKDLSTDKMICSTPKITDTLRNHVTEIKPEMNLLKPNIASLGQEMPVLRPQKIFPNIDIIRNQNLKSFKEQKMLQNGVIPMLQPNFSFTQQKIQVKSLDALKENVYDNDSDEEYMEEEEQPMDLVLDLSKKKCEEDTYRSQEELPQDLTKKTPPPPPSPVTPQLPPNMGELFAQQLLKTPPKIDPAALYATQLAHLYRSGFPALSNWTGFPLNPLFPAIAPTLLQNSQDLKERMQRFQLCGGSMIAEDLKNLQNLQNLHQQSLRSPATNYNGFKIEPKSEIKNFSTPKRPEDLKPLSLNIETSFVENTAAKLQSPIPQIKDLMPSPNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGSVGNPGRKAQCLPIKPSYCDLSIPSYEVSKTQEYNDTKELLNEKIKLAILEQHLRANQNINQDVKKDDDEDCELVIDENEENPEPKTEETSQRREYERSRILEEKLKELHQFKSEVKHIKNEENQDLVPVARLLDNASQQQFKEYFKREGEEAEVGGASDEDEEGLVASGSTSEGNVSGTDENRSESETTQPVKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNAATTITNDTSNNNNNANYLMRNVPERPFKCSNCPSSTFSTYSNLKKHISCKHSTNAQGDDIKAQGYEAGSSEDEKIPTTDAKSDWESQLAYSKLNVDLSQTVQNSDLPFKCHLCEGSFSERQDALDHIKERHASEYDLLMSKNALDTNATTPDDAAHQDDDESEIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNLNFENDTNNSDEDGNNVSPTFDKASKESSSTHKSEKTDESDGTEGGDLISNLLGLRDRSIIDKVFETASADDAAKLLGVKNGVKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01290705; iTF_00886792; iTF_01370160; iTF_00110836; iTF_01014947; iTF_00722363; iTF_01310814;
90% Identity: -
80% Identity: -