Basic Information

Insect: Leptura quadrifasciata
Gene Symbol: Rreb1
Assembly: GCA_963675555.1
Location: OY776674.1:116281329-116288071[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2e-05 0.0037 19.8 0.9 1 23 59 81 59 81 0.99

2 16 0.0012 0.22 14.2 0.2 1 23 94 116 94 116 0.98

3 16 9.2e-05 0.017 17.6 6.4 1 23 122 144 122 144 0.98

4 16 0.15 27 7.6 0.1 1 23 206 230 206 230 0.87

5 16 0.017 3.2 10.5 1.1 2 23 236 258 236 258 0.96

6 16 8.5 1.6e+03 2.0 0.8 1 11 304 314 304 325 0.80

7 16 0.11 21 8.0 0.1 1 23 453 475 453 475 0.96

8 16 7.5e-05 0.014 17.9 1.9 1 23 484 506 484 506 0.98

9 16 0.0013 0.24 14.1 3.1 1 23 512 535 512 535 0.97

10 16 0.00076 0.14 14.8 3.0 1 23 934 957 934 957 0.97

11 16 0.00076 0.14 14.8 0.4 2 23 1174 1195 1173 1195 0.97

12 16 0.19 36 7.2 6.3 1 23 1201 1224 1201 1224 0.97

13 16 0.065 12 8.7 1.1 1 20 1253 1273 1253 1274 0.94

14 16 0.13 25 7.7 0.9 1 23 1334 1357 1334 1357 0.96

15 16 0.026 4.7 10.0 0.4 3 23 1404 1424 1402 1424 0.93

16 16 0.012 2.1 11.0 5.9 1 23 1430 1452 1430 1452 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2e-05	0.0037	19.8	0.9	1	23	59	81	59	81	0.99
2	16	0.0012	0.22	14.2	0.2	1	23	94	116	94	116	0.98
3	16	9.2e-05	0.017	17.6	6.4	1	23	122	144	122	144	0.98
4	16	0.15	27	7.6	0.1	1	23	206	230	206	230	0.87
5	16	0.017	3.2	10.5	1.1	2	23	236	258	236	258	0.96
6	16	8.5	1.6e+03	2.0	0.8	1	11	304	314	304	325	0.80
7	16	0.11	21	8.0	0.1	1	23	453	475	453	475	0.96
8	16	7.5e-05	0.014	17.9	1.9	1	23	484	506	484	506	0.98
9	16	0.0013	0.24	14.1	3.1	1	23	512	535	512	535	0.97
10	16	0.00076	0.14	14.8	3.0	1	23	934	957	934	957	0.97
11	16	0.00076	0.14	14.8	0.4	2	23	1174	1195	1173	1195	0.97
12	16	0.19	36	7.2	6.3	1	23	1201	1224	1201	1224	0.97
13	16	0.065	12	8.7	1.1	1	20	1253	1273	1253	1274	0.94
14	16	0.13	25	7.7	0.9	1	23	1334	1357	1334	1357	0.96
15	16	0.026	4.7	10.0	0.4	3	23	1404	1424	1402	1424	0.93
16	16	0.012	2.1	11.0	5.9	1	23	1430	1452	1430	1452	0.98

Sequence Information

Coding Sequence: ATGGAGGCATCGCCCTCGCCGAACCAAATAGTCAAAGAAACCCTAGCTAACCGTAGCGACTCAGGCATCTTCTCTGCTACCACTAATACCACCATCGATCATAGCGACTTTTCAAAAAACTCCGAAAACTGCGACACAGATAACAGGAGCGACTGTTCCTCACCAGAAAGAAAATACGTGTGTCCTATCTGTGACAGAATGCTAACGTCCCAGCACGAGTTTACTTTGCATATTAGATCTCATAATAACGAGAACGAAGTGCAGGACAGCGAAAAGGGTTACACTTGTAGGATATGCTTAAAGGTTTTAAGCTCGAGTAGCAGCCTGGATCGTCACGTTCTGGTGCACAGCGGAGAGCGTCCATTCCACTGCAAGTACTGTGGGGACACTTTTACAACGAATGGCAACATGCACAGGCATATGAGGACTCATTCTCACAAAACTGAAAACAGCTACGAGTCGGATGGGAGCACTGACAGCAATAGTTCAAAGAGCACAGAGTTCAACAACAACAACAGAATTGAAAAATAcaacaacaaaagaaaaaatgagaACCCAGATACTACTAGTAAAAGACAGCGTGAGAGCTGTAGCGACACAGATACAAGTCAATTCTTTAAATGTCCAGTATGCGAACGAGGCGATTTCAATTCCTTATCTAACTTAGAAGCCCATTTGGAGGATAACCATCCAGACTATCCTGCCAAGTGCAATGAGTGCCAGCAAGTCTTCTTAAATAACAAACAATTAACAACTCACAAGGCAACTGTtcacgaaaatgtaataactcgaCACCCGGTTGTAGGTTTCAAGGATTTAACTTTCCTGGATTTTTCTAGTGAAAAGTTTCGTCACATAGCTCGGAGGGAATGTGAAATAAATTTACACAAAGCTTCCGGAGGTTTAAAATTTCAATGTAGGAGATGCAACAGAGCATTTCCTTGCACAAACTCACTGGACATACATGAACAAAGCTGTGTATTGGTAGAATGTGCCAACGGATTGGATCTTAGCACTATTTCTCAACCAGAAATAAGGCGCATGGAATTCTTCTCGCGACTGAACTTGGTGGACAAGTCTCCGGAAAAACAGCCCCCAGTCACTCAACTTGAAAAAGCCCCTAACAAACTTAGAGAGCATCTTGTAAAAGCAATGGACAACACCAAAGATTTAGCTGATATTCAGtcaattttatcaaatataaatcTGCAGCAACTCCAAGCCAAACAACATGAGTTGCGGCTACCCGCGTCTAAGCCTCTCTCAGAACAATGTGATTATCAAAAAAACGAACAAGAGGAAGAATCGCAAGATTTATTTGCTGTGGAGTTTAGGAAGATGAAATTGCGAGGGGAATTTCCATGCAGGCTGTGCACGGCGGTATTTCCCAATTTACGTGCACTTAAGGGTCACAATCGCGCCCACCTCAACGGCAACACAAATGGTACCTACCACTGTAATATGTGTCCGCATTCATCCATCGATAAAGCAGCGCTAATCCGCCACATGCGGACACACAACGGAGACAGGCCTTACGAGTGTTCACTGTGCAATTACGCATTCACCACCAAAGCCAACTGCGAAAGACATTTAAGAAATCGACATGCTAAAACGACTAGAGAGGAAGTGAAAAAGTCAATAATATACCACCCATCAGAAGATCCCACTAACGAAGACCTAAACAAATTAACAACCAAAGAGGAGCCCAGGAAACTGAATGTCCCTCCGTTTGTAGAAACTAGAGATTTAAGCCCAGAAAAAGTGCATTGCTCTACGCCGAAAATTCCTGAAGTAGTCCGGAACCACGTATCTGAAATAAAATCAGAAATTAACCTGCATAAGCCTAATATAACACCGTTAATCCCAGAGCTACCGTTATTGAAACCTACCAAGACTGTTCCTAGTATTAATGATATTATTCGAAACGAGAACCTCAGGTCTTTAAAGGAACATAAGTTGATGCATAACGAGGTAGTTCCGATGCTTCAGCATAATTTCGGATACTCACAGCAAAAAATTCAAGTCAAAAGTTTAGAAGCATTAAAGGAAAACCATACTTACGATAACGAATCTGAAGAGGAATACGTAGAGGAGCCCATGGATTTAGTTTTGGATTTGAGTAAAAAGAAAACCGACGAGGACCATAAACGGATCCGAGAAGACCTGCCACAAGATTTAACAAAGAAATCACCTCCACCTCCAAGCCCAATCGCTACTCCGTTACCGCCGAATATGGGTGAGATATTTGCTCAACAGTTATTGAAAACACCTCCGAAAATCGATCCCGCCACTTTATACGCTACACAATTAGCTCACCTGTGCCGAAGCGGTTTTCCTGTTCTACCCAACTGGGCCGGTTTTCCTCTGAATCCCCTACTCTTTCCTTCATTGCCCCCATCTTTGCCACAGAGTCCACAAGATATTAAGGAGCGAATGCAGAGGTTTCAACTGTGTGGCGGGTCTATGATCGCAGAGGATTTGAAAAACTTGCAAAATCTTCAAAGTTTACAACAACAAACACTTCGTGGCCCTAATATAAACTACAACGGTTACAAATTAGAATCTAAGCCTGATATGACGATGGAGAATAATTTTTCCACCCCAAAGAAACCGGAAGACTTAAAGCCCTTGAGCCTGAACGTTGATACAACTTTTGGTGAAAATCTAGCCAAATTACAGAGTCCCATACCTCAAAACAAACCGGACTTAATGCAGTCTCCCAACTCtgtaaaaatggtgataaaaaaTGGCGTTCTAATGCCGAAGCAGAAGCAGAGAAGGTACAGAACCGAACGACCGTTCACTTGCGAGCACTGCTCGGCTAGATTTACTTTGAGATCGAATATGGAACGTCACATTAAGCAGCAACATCCCCAGTTTTGGTCGCAGCGGCAGAGGGGTAGCGTCGGTAATCCTGGACGTAAAGCTCAAAGTTTGCCCGTGAAGTCCAACTACTGCGATCTTAGCATACCTAATTACGAAGCGCCAAGAAATCAAGATTATAATGATAGTAAGGAGCTTTTAAATGAGAAACTTAAGTTCGCCATTTTAGCACAGCAACTTCGGGCAAATCAAAATGCGAACCAGGAGATGAAGAAGGATGAAGACGAAGACTGCGCTCTAGTTATAGatgaaaatgatgaaaaaaatgAACCAAAGACTGAGGAACTCAACCAAAGAAATGATTACGAGCGAAGCCGAATTTTAGAAGAGAAATTGAAAGAACTACAACAGTTTAAGGCCGAAGCTAGACACCTTAAAAACGAGGAGAATCAAGATTTAGTACCTGTATCGCGGCTTCTGGATAATGCTTCTCAACAACAAttcaaagaatattttaagagGGGCGGAGAGGATCATGAAGTGGGCGGAGCTAGTGAAGAAGATGAAGAGGGCCTGGTAGCAAGTGGTAGCACAAGCGAAGGAAATGTTTCCGGAACAGACGAGAACAGATCTGAATCCGAGACAACTCAACCAGTAAAAAAGAAGTCTGCTTACTCGCTGGCTCCAAACCGAGTCAGCTGCCCCTATTGCAGTCGCAAATTTCCCTGGACTTCTTCCTTACGCAGGCATATCCTAACACATACGGGACAGAAGCCATTCAAGTGCAGCCACTGTCCGCTTCTCTTCACCACCAAATCCAACTGCGACCGCCACTTGCTACGTAAGCACGGTAATGCGGCCACTACCATCAGCAACGATGCCAGTAACAATAACAACACCAACTATTTGATGCGAAACGTTCCAGAGCGCCCTTTTAAGTGCTCTAGTTGTCCGAGCAGCACATTCTCGACGTACTCCAATTTAAAAAAGCACATTAGCTGCAAACATTCCACCAATGCCCAAGGAGATGACATCAAGGCGCAGGGGTATGAGGCGGGCAGCTCTGAGGATGAAAAAATTCCGAATTTCGAAATTAAGAATGACTGGGAGACGCAGCTGGCTTATAGCAAGTTAAACGTAGACCAATCACAAACAGTACAAAACTCTGATCTGCCGTTTAAGTGTCATTTATGTGAAGGGTCCTTCTCAGAAAGGCAAGATGCCTTGGACCACATCCGAGACAGGCATGCTTCTGAATATGATTTGCTTATGTCGAAGAATGCTTTGGACAACAATGCTACTACACCTGATGATGTATCTCACCAAGATGATGACGAGAGCGAGATTCGCGGGAAATTTCCAGATTACTCCAATCGTAAAGTCATTTGTGCCTTTTGTATGCGCAGGTTTTGGTCTGCGGAAGACTTGAGACGTCATATGCGCACACACACTGGTGAACGGCCATTTAGTTGCGATATATGCCGTCGTAGATTCACTTTAAAACATAGTATGCTGCGTCATAGGAAAAAACACAATGTCAATTTTGAAAGCGAGAATATCAACAGTGATGAAGATGGAAACAATATTTCTCCAATATACGATAAGTATGTTAAAGGGGAAAATAATAATTCTATGCAAAAAGCGGTTGAAAAAACCGACGAATCAGATGGTACTGAGGGAGGAGATCTAATAAGTAACCTTTTAGGGTTAAGGGACAGCACTATCATCGATATGGCCCTGGTAGCTTCGGCAGATGATGCTGCCAAACTATTAGGGGTCAAAAATGGAGTTAGGgaatag
Protein Sequence: MEASPSPNQIVKETLANRSDSGIFSATTNTTIDHSDFSKNSENCDTDNRSDCSSPERKYVCPICDRMLTSQHEFTLHIRSHNNENEVQDSEKGYTCRICLKVLSSSSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHSHKTENSYESDGSTDSNSSKSTEFNNNNRIEKYNNKRKNENPDTTSKRQRESCSDTDTSQFFKCPVCERGDFNSLSNLEAHLEDNHPDYPAKCNECQQVFLNNKQLTTHKATVHENVITRHPVVGFKDLTFLDFSSEKFRHIARRECEINLHKASGGLKFQCRRCNRAFPCTNSLDIHEQSCVLVECANGLDLSTISQPEIRRMEFFSRLNLVDKSPEKQPPVTQLEKAPNKLREHLVKAMDNTKDLADIQSILSNINLQQLQAKQHELRLPASKPLSEQCDYQKNEQEEESQDLFAVEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNTNGTYHCNMCPHSSIDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKTTREEVKKSIIYHPSEDPTNEDLNKLTTKEEPRKLNVPPFVETRDLSPEKVHCSTPKIPEVVRNHVSEIKSEINLHKPNITPLIPELPLLKPTKTVPSINDIIRNENLRSLKEHKLMHNEVVPMLQHNFGYSQQKIQVKSLEALKENHTYDNESEEEYVEEPMDLVLDLSKKKTDEDHKRIREDLPQDLTKKSPPPPSPIATPLPPNMGEIFAQQLLKTPPKIDPATLYATQLAHLCRSGFPVLPNWAGFPLNPLLFPSLPPSLPQSPQDIKERMQRFQLCGGSMIAEDLKNLQNLQSLQQQTLRGPNINYNGYKLESKPDMTMENNFSTPKKPEDLKPLSLNVDTTFGENLAKLQSPIPQNKPDLMQSPNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGSVGNPGRKAQSLPVKSNYCDLSIPNYEAPRNQDYNDSKELLNEKLKFAILAQQLRANQNANQEMKKDEDEDCALVIDENDEKNEPKTEELNQRNDYERSRILEEKLKELQQFKAEARHLKNEENQDLVPVSRLLDNASQQQFKEYFKRGGEDHEVGGASEEDEEGLVASGSTSEGNVSGTDENRSESETTQPVKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNAATTISNDASNNNNTNYLMRNVPERPFKCSSCPSSTFSTYSNLKKHISCKHSTNAQGDDIKAQGYEAGSSEDEKIPNFEIKNDWETQLAYSKLNVDQSQTVQNSDLPFKCHLCEGSFSERQDALDHIRDRHASEYDLLMSKNALDNNATTPDDVSHQDDDESEIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNVNFESENINSDEDGNNISPIYDKYVKGENNNSMQKAVEKTDESDGTEGGDLISNLLGLRDSTIIDMALVASADDAAKLLGVKNGVRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01227639;
90% Identity: iTF_01370160;
80% Identity: -