Basic Information

Insect: Rosalia funebris
Gene Symbol: Rreb1
Assembly: GCA_037954035.1
Location: JAZFAV010000026.1:16387420-16398862[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.4e-05 0.0028 19.7 0.9 1 23 84 106 84 106 0.99

2 16 0.0014 0.17 14.1 0.2 1 23 119 141 119 141 0.98

3 16 0.00011 0.013 17.6 6.4 1 23 147 169 147 169 0.98

4 16 0.034 4.1 9.8 0.3 1 23 230 254 230 254 0.90

5 16 0.061 7.3 9.0 1.9 2 23 260 282 260 282 0.96

6 16 0.31 38 6.7 1.5 1 21 328 348 328 349 0.88

7 16 0.13 16 7.9 0.1 1 23 480 502 480 502 0.96

8 16 7.2e-05 0.0086 18.2 1.9 1 23 511 533 511 533 0.98

9 16 0.0015 0.18 14.0 3.1 1 23 539 562 539 562 0.97

10 16 0.00091 0.11 14.7 3.0 1 23 966 989 966 989 0.97

11 16 0.00091 0.11 14.7 0.4 2 23 1206 1227 1205 1227 0.97

12 16 0.23 28 7.2 6.3 1 23 1233 1256 1233 1256 0.97

13 16 0.023 2.8 10.3 1.2 1 20 1285 1305 1285 1306 0.95

14 16 0.17 20 7.6 1.0 1 23 1366 1389 1366 1389 0.96

15 16 0.031 3.7 9.9 0.4 3 23 1436 1456 1434 1456 0.93

16 16 0.0015 0.18 14.1 5.1 1 23 1462 1484 1462 1484 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.4e-05	0.0028	19.7	0.9	1	23	84	106	84	106	0.99
2	16	0.0014	0.17	14.1	0.2	1	23	119	141	119	141	0.98
3	16	0.00011	0.013	17.6	6.4	1	23	147	169	147	169	0.98
4	16	0.034	4.1	9.8	0.3	1	23	230	254	230	254	0.90
5	16	0.061	7.3	9.0	1.9	2	23	260	282	260	282	0.96
6	16	0.31	38	6.7	1.5	1	21	328	348	328	349	0.88
7	16	0.13	16	7.9	0.1	1	23	480	502	480	502	0.96
8	16	7.2e-05	0.0086	18.2	1.9	1	23	511	533	511	533	0.98
9	16	0.0015	0.18	14.0	3.1	1	23	539	562	539	562	0.97
10	16	0.00091	0.11	14.7	3.0	1	23	966	989	966	989	0.97
11	16	0.00091	0.11	14.7	0.4	2	23	1206	1227	1205	1227	0.97
12	16	0.23	28	7.2	6.3	1	23	1233	1256	1233	1256	0.97
13	16	0.023	2.8	10.3	1.2	1	20	1285	1305	1285	1306	0.95
14	16	0.17	20	7.6	1.0	1	23	1366	1389	1366	1389	0.96
15	16	0.031	3.7	9.9	0.4	3	23	1436	1456	1434	1456	0.93
16	16	0.0015	0.18	14.1	5.1	1	23	1462	1484	1462	1484	0.98

Sequence Information

Coding Sequence: ATGCAAGGGGCCGTTTTTATGCCTTACAATCCCCAACAAGGCTTCTCGCCCCCAAGCGGCCCCATAGCTACCGAAATGGAGGCATCGCCATCTCCGAATGAAATAACTAAAGACAGTCTGGCTAACCGAAGTGACTCTGGTATCTTCTCCGCAACTATAAACACTACAATCGACAACAGCGATTCGACGAAAAACTCCGAAAATTGCGATACAGATAACAGGAGTGATTGTTCATCCCCCGAAAGAAAATACGTGTGCCCTATTTGCGACAGAATGCTTACCTCCCAACACGAGTTTACTTTGCACATTAGATCGCATAATAACGAGAACGAGGTACAAGACAACGAAAAAGGTTATACCTGCAGAATATGTTTGAAGGTATTGAGCTCCAGTAGCAGTTTGGATCGTCATGTCCTGGTACACAGTGGTGAACGTCCATTCCACTGTAAATACTGCGGTGATACTTTTACTACTAACGGTAATATGCACAGGCATATGAGGACCCATTCTCACAAGACAGAAAATAGTTACGAATCAGATGGCAGCACAGATAGTGGCAGTTCAAAAAGTACagaatttaacaataataaaatagacaaaTCAAACAACAAAAGGAAAATTGAAAGCTCTGATGTTATCAATAAGAGATTACGTGAGAACTGTGACGATACCGGAGCAAGTCAGTCCTTCAAGTGTCCGGTTTGCGAAAGGACGGATTTTAATTCTCTGTCTAACTTAGAAACTCACTTGGAAGATAATCATCCCGATTATCCTGCTAAGTGTAATCAATGCAACCAGGTTTTTCTAAACAACAAGCAATTAACCATGCACAAAACAACTGCTCATGAAAGTGTTACTTCACGACATCCTGTTGTCGGTTTCAAAGATCTGACTTTTGTGGATTTCTCCAGTGAAAAATTTCCACACATTGCTCGAAGGGAGTGCGAAATTAATCTGCATAAAGTTTCTGGAGGACTGAAATTTCAATGCAAGAAATGTAACAGAGCTTTTCCCTGTACGAACTCTTTAGAAATTCACGAGAGGAATTGCGTTTATATAGAAAATGCTAACGGTTTAGATCTGAGCACCATTTCTCAACCAGAAATAAGACGCATAGAGTTTTTTTCAAGACTAAACTTAGTGGATAATTCGCCAGAAAAACAACCACTAACCACATCCTTAGAGAAAActcaatataaattaaaagaacatatCATTAAGACAATGGATAATACCAAAGATTTGGCTGATATTCAGTCCattttatctaatattaatttacaacaACTCCAAACGAAACAGAATGAATTGCGACTACCTACCCCTAAATCTATCCCTATTCATGCGGATCATACAGATTATCAAAAGCACGAACAAGAGGAGGAATCGCAGGATTTATTCGCCGTTGAATTTAGGAAAATGAAATTGCGAGGTGAATTTCCTTGTAGGCTCTGTACAGCagtttttccaaatttgagGGCACTTAAAGGTCACAACCGAGCTCATCTCAATGGCAACACTAATGGTACTTATCATTGTAATATGTGTCCACATTCATCTGTTGATAAAGCGGCCTTAATCCGACATATGCGTACGCATAATGGAGACAGACCATACGAATGCTCTTTATGCAACTACGCTTTTACCACGAAGGCGAATTGCGAAAGACATTTGAGAAACAGGCATGCCAAAACAACCAGGGAAGAAGTCAAAAAGTCTATAATATATCATCCTTCCGAAGATCCTACAAATGAAGACCTAAACAAACTAACATCTAATAAAGAAGAACCAAAGAAAAGTAATCTAGAATCTCCTGTAGAAACATGCGAGTTAACACCTGACAAGATACATTGTTCTACACCGAAAATTCCGGAAATGGCACGAAGTACTCTCACTGAGATTAAATCAGATATGAAATTGCATAGTCCTAATATTGGCGCTGTCATCCCTGAACTGCAGGCACTTAAATCTAAAAAgatattttctaacatcagcGATATTATTCGCAATGAAAATCTGAGATCATTAAAAGGTCATAAATATATGCATAACGGGGCACCCCCAATGTTTCAACCAAACTTTAACTTTTCTCCTCAAAAAATTCAGgttaaaaatttggaaacattaAAAGAGAGCACTGTGTATGACAACGAGTCTGAGGAGGAGGAAGAATACATCGAAGAAGATGAACAACCGATGGACTTGGTTTTAGACTTAAGTAAAAAGAGAACCAGCGATGAAAGCAAAGGGATCCAAGAAGAACTCCCCCAAGACCTAAGAAAGAAATCTCCTCCACCCCCAAGTCCGATTACACCTCACTTACCGTCAAACATGGGCGAAATATTTGctcaacaattattaaaaacgCCACCAAAAATTGATCCAGCTGCCTTGTATGCAACCCAGTTGGCGAATTTGTATCGCACTATTCCCACAATTTCTAATTGGACCGGATTTCCCTTGAATCCGTTGCTCTTTCCTACACTATCAACAACTTTACCCCAAAATCCGCAAGACATTAAAGAACGAATGCAAAGATTCCAATTGTGTGGAGGTTCCATGATTTCCGAGGATCTGagaaatttgcaaaattttcagaACTTGCAGCAACAGTCCATACGTAATGTTCCATTAAACTACAATGGGTTTAATTTAGAACCGAAACCTGAGCTAAAAATGGAGAATAATTTTTCTACGCCAAAAAAACAGGAGGGTTTAAAACCGTTACGTTTGAATGTGGATACAAATTTTAACGAGAATCTTGCAAAATTACAAAGTCCTGTATCTCAAAGTAAACCAGATTTAATGCAGTCGCCAAACTCTGTGAAGATGGTGATAAAAAATGGTGTTTTAATGCCAAAGCAAAAACAACGGCGATATAGAACCGAGCGTCCGTTTACCTGTGAACATTGTTCGGCCAGATTTACATTAAGATCGAATATGGAAAGACACATAAAACAACAACATCCTCAGTTTTGGTCGCAAAGGCAACGGGGTAGCGTAGGTAATCCTGGGCGCAAAGCTCAATCCTTACCAATGAAACCAAGCTTTTGCGATCTTAGTATACCAAATTATGACCTACCAAAGAGTCAGGATTATAGTGATACCaaagaattattaaatgaaaaactaaaattCGCTATCCTCGCACAGCAATTGAGAGCGAGCCAAAGTGTTAACCAAGGAATCAAAAAAGACGAAGATGAGGATTGTGCTTTGATTATagatgaaaatgaagaaaaacacgAGCCAAAGGCTGAAGAAAATGACCAAAAAACTGACTATGAAAAAACTCGAATTCTAGaagaaaaactaaaggaaaTGAGGCAGTTTaaagtagatataaaaaattccaaacacGAGGAAAATCAAGATTTGGTACCTGTATCGAGACTTCTGGATAATGCTTCGCAACAACAGTTCAAAGAATACTTTAAACGAGAAGGTGAAGATCAAGAAGTTGGTGGGGTTAGTGAAGAAGATGAAGAAGGTCTGGTTGCAAGCGGCAGCACTAGTGAAGGGAATGTCTCGGGAACAGATGAAAATAGATCAGAATCGGAAACAACTCAGCCAGTAAAGAAGAAATCTGCTTACTCCTTGGCGCCAAATCGCGTCAGCTGTCCTTACTGTAGCCGCAAATTTCCCTGGACCTCTTCTTTACGTAGGCATATTTTAACACATACAGGTCAAAAACCATTCAAATGTAGCCACTGTCCCCTTCTATTCACCACCAAATCTAATTGCGATCGACATTTGTTACGTAAACATGGTAACGCGGCAACCACTATCGCTAATGACGCCGGCAACAACAATAACACTAATTACTTAATGAGGAATGTGCCAGAGCGTCCATTTAAGTGTTCGAACTGTCCTAGCAGCACGTTTTCCACTTActcgaatttaaaaaaacacatcAGTTGTAAACATTCCACTAATGCTCAAGGAGACGACATCAAAGCTCAAGGGTACGAAGCAGGCAGTTCCGAAGACGAGAAAATTCCTAACGTCGATGTGAAACACGACTGGGAATCCCAATTAGCATATAGCAATCTAAACGCCGATTCGTCGCAAATAGTACAAAACTCCGATTTGCCCTTCAAGTGCCATTTATGTGAGGGTTCTTTCTCAGAGAGGCAAGATGCTCTAGATCACATCCGAGATAAGCACGCCTCCGAATATGACCTGCTGATGTCAAAAAATGCTTTAGACACGACCGCTACAACTCCCGATGATGCCACCCACCAAGATGACGATGAGAGCGAAATCCGCGGGAAATTTCCAGATTATTCAAACCGAAAAGTTATCTGTGCGTTTTGTATGCGGAGGTTTTGGTCTGCTGAAGATTTGCGACGTCACATGCGGACACACACAGGAGAGCGACCTTTCAGCTGCGACATGTGCGGCCGCAGATTTACCCTAAAACACAGCATGTTGCGCCATAGAAAAAAGCACAGCATAAAATTCGACGCTGACAACAACAACAGCGACGAGGATGGTAACAATGTTTCTTCGATGTTCGCCAAAAACGAAAACAGTTCTACGCAAAAAGGCGCAGAAAAAACAGATGAGTCCGATTGTACGGAAGGAGGGGATCTAATTAGCAATTTATTAGGTTTAAGAGACAGGTCCATTATTGATAAGGTATTGGCAGCTTCAGCTGATGATGCTGCCAAGTTATTGGGCGTTAAAAATGGagttaaagaataa
Protein Sequence: MQGAVFMPYNPQQGFSPPSGPIATEMEASPSPNEITKDSLANRSDSGIFSATINTTIDNSDSTKNSENCDTDNRSDCSSPERKYVCPICDRMLTSQHEFTLHIRSHNNENEVQDNEKGYTCRICLKVLSSSSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHSHKTENSYESDGSTDSGSSKSTEFNNNKIDKSNNKRKIESSDVINKRLRENCDDTGASQSFKCPVCERTDFNSLSNLETHLEDNHPDYPAKCNQCNQVFLNNKQLTMHKTTAHESVTSRHPVVGFKDLTFVDFSSEKFPHIARRECEINLHKVSGGLKFQCKKCNRAFPCTNSLEIHERNCVYIENANGLDLSTISQPEIRRIEFFSRLNLVDNSPEKQPLTTSLEKTQYKLKEHIIKTMDNTKDLADIQSILSNINLQQLQTKQNELRLPTPKSIPIHADHTDYQKHEQEEESQDLFAVEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNTNGTYHCNMCPHSSVDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKTTREEVKKSIIYHPSEDPTNEDLNKLTSNKEEPKKSNLESPVETCELTPDKIHCSTPKIPEMARSTLTEIKSDMKLHSPNIGAVIPELQALKSKKIFSNISDIIRNENLRSLKGHKYMHNGAPPMFQPNFNFSPQKIQVKNLETLKESTVYDNESEEEEEYIEEDEQPMDLVLDLSKKRTSDESKGIQEELPQDLRKKSPPPPSPITPHLPSNMGEIFAQQLLKTPPKIDPAALYATQLANLYRTIPTISNWTGFPLNPLLFPTLSTTLPQNPQDIKERMQRFQLCGGSMISEDLRNLQNFQNLQQQSIRNVPLNYNGFNLEPKPELKMENNFSTPKKQEGLKPLRLNVDTNFNENLAKLQSPVSQSKPDLMQSPNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGSVGNPGRKAQSLPMKPSFCDLSIPNYDLPKSQDYSDTKELLNEKLKFAILAQQLRASQSVNQGIKKDEDEDCALIIDENEEKHEPKAEENDQKTDYEKTRILEEKLKEMRQFKVDIKNSKHEENQDLVPVSRLLDNASQQQFKEYFKREGEDQEVGGVSEEDEEGLVASGSTSEGNVSGTDENRSESETTQPVKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNAATTIANDAGNNNNTNYLMRNVPERPFKCSNCPSSTFSTYSNLKKHISCKHSTNAQGDDIKAQGYEAGSSEDEKIPNVDVKHDWESQLAYSNLNADSSQIVQNSDLPFKCHLCEGSFSERQDALDHIRDKHASEYDLLMSKNALDTTATTPDDATHQDDDESEIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDMCGRRFTLKHSMLRHRKKHSIKFDADNNNSDEDGNNVSSMFAKNENSSTQKGAEKTDESDCTEGGDLISNLLGLRDRSIIDKVLAASADDAAKLLGVKNGVKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01227639;
90% Identity: -
80% Identity: -