Basic Information

Insect: Monochamus alternatus
Gene Symbol: Rreb1
Assembly: GCA_037114965.1
Location: CM073427.1:9158603-9163301[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.9e-05 0.0036 19.1 0.7 1 23 51 73 51 73 0.99

2 16 0.00025 0.018 16.9 0.3 1 23 86 108 86 108 0.98

3 16 0.00015 0.011 17.7 6.4 1 23 114 136 114 136 0.98

4 16 0.052 3.8 9.6 0.1 1 23 197 221 197 221 0.88

5 16 0.18 13 7.9 1.5 2 23 227 249 227 249 0.96

6 16 0.92 67 5.7 1.3 1 21 295 315 295 316 0.92

7 16 0.17 13 8.0 0.1 1 23 445 467 445 467 0.96

8 16 0.00012 0.0086 17.9 1.9 1 23 476 498 476 498 0.98

9 16 0.002 0.15 14.1 3.1 1 23 504 527 504 527 0.97

10 16 0.002 0.15 14.1 2.1 1 23 925 948 925 948 0.95

11 16 0.0012 0.087 14.8 0.4 2 23 1163 1184 1162 1184 0.97

12 16 0.3 22 7.2 6.3 1 23 1190 1213 1190 1213 0.97

13 16 0.1 7.5 8.7 1.1 1 20 1242 1262 1242 1263 0.94

14 16 0.21 15 7.7 0.9 1 23 1323 1346 1323 1346 0.96

15 16 0.04 2.9 10.0 0.4 3 23 1393 1413 1391 1413 0.93

16 16 0.018 1.3 11.1 5.9 1 23 1419 1441 1419 1441 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.9e-05	0.0036	19.1	0.7	1	23	51	73	51	73	0.99
2	16	0.00025	0.018	16.9	0.3	1	23	86	108	86	108	0.98
3	16	0.00015	0.011	17.7	6.4	1	23	114	136	114	136	0.98
4	16	0.052	3.8	9.6	0.1	1	23	197	221	197	221	0.88
5	16	0.18	13	7.9	1.5	2	23	227	249	227	249	0.96
6	16	0.92	67	5.7	1.3	1	21	295	315	295	316	0.92
7	16	0.17	13	8.0	0.1	1	23	445	467	445	467	0.96
8	16	0.00012	0.0086	17.9	1.9	1	23	476	498	476	498	0.98
9	16	0.002	0.15	14.1	3.1	1	23	504	527	504	527	0.97
10	16	0.002	0.15	14.1	2.1	1	23	925	948	925	948	0.95
11	16	0.0012	0.087	14.8	0.4	2	23	1163	1184	1162	1184	0.97
12	16	0.3	22	7.2	6.3	1	23	1190	1213	1190	1213	0.97
13	16	0.1	7.5	8.7	1.1	1	20	1242	1262	1242	1263	0.94
14	16	0.21	15	7.7	0.9	1	23	1323	1346	1323	1346	0.96
15	16	0.04	2.9	10.0	0.4	3	23	1393	1413	1391	1413	0.93
16	16	0.018	1.3	11.1	5.9	1	23	1419	1441	1419	1441	0.98

Sequence Information

Coding Sequence: ATGGAGGCATCGCCCTCACCAAACCAAATGGCCAACCGAAGCGACTCGGGTATATTCTCGTCAACAACCAACACCACCATCGACCAAACCGACCTCTCCAAAAACTCCGATTCGGACAACAGGAGCGACTGCTCCTCGCCAGAAAGGAAGTACGTCTGTCCCATATGCGACCGAATCCTGACTTCTCAACACGAGTTCACATTGCACATTCGGTCGCACAACAACGAAAACGAAGTTCAAGACTCCGAAAAGGGTTACACCTGCAGGATATGCCAAAAGGTACTCAGCTCGAATAGCAGCCTGGACCGTCACGTCCTCGTGCACAGCGGGGAGCGTCCTTTCCATTGCAAATACTGCGGGGACACTTTTACTACCAACGGGAATATGCACAGACACATGAGGACGCATTCCCACAAGTCTGAGAACTATGAATCAGACGGAAGCGTGGACAGTAACAGTTCTAAGAGTACCGAGTTCAATAACAACAAAGTGGAAAAAGTTAACagcaataaaagaaaaaatgacaGTCCGGACTGTAGCAGCAAGAAACTACGGGACAACTGCAGCGACAGCGAATCATCGCAGTCATACAAGTGTCCCGTGTGCGAAAGATCAGATTTTAACACTTTGTCCAACCTAGAAGCCCACTTGGAAGACAATCACCCCGAATACCCGGCTAAGTGCAACCAATGCAATAACGTATTCCTCAACAACAAGCAGCTTACGACGCACAAAGCCACTGTTCATGAAAACAACATTTCCCGACACTCCGTCGTCGGATTCAAAGACCTCACCTTCGTCGACTTTTCAAGCGAAAAGTTCCCCCACATCGCCCGAAGAGAGTGCGAGTTGAACCTGCACAAGGTATCCGGAGGGCTGAAGTATCAGTGCAGAAAGTGCAGCAGAGCATTCCCCTGCAACACCTCCCTAGAGATCCACGAGAAGAGCTGCATTTCCGTGGAACACGCCAACGGCTTGGACCTCACCACTATTTCCCAACCCGAAATTAGACGGATGGAATTTTTTTCCAGACTCAACTTATTGAATACTTCCCCCGAGAAACAAATCCCGCCGCCTCAACACAACAAACCTTCGAATAAGTTACAGGAGCATCTAGCGAAAGCGATGGACAATACCAAAGATTTAGCAGACATCCAGTCCATCCTTTCCAACATTAACTTGCAGCAGCTCCAGGCTAAACAGGGTGAATTGAGGTTGCCAACATCTAAGTCACAAATGGAGCACTCCCCCGAATTCCAGAAAAACGAACAGGAGGAGGAATCCCAGGATCTGTTCGCCGTGGAATTCAGAAAAATGAAGTTGCGAGGCGAATTTCCCTGCAGACTGTGCACCGCTGTGTTCCCTAATTTGCGAGCTCTGAAGGGGCACAATCGAGCTCATCTCAATGGGAACACAAACGGCACCTATCACTGCAACATGTGTCCTCATTCGTCTATCGATAAGGCGGCTTTGATCAGACACATGCGCACTCACAACGGAGACCGACCTTATGAATGCTCTTTGTGCAACTACGCTTTCACCACCAAAGCTAATTGTGAGAGACATCTGAGGAACAGACACGCGAAAACTACGAGAGAGGAAGTCAAGAAGTCTATAATCTACCACCCTTCGGAAGACCCTACCAACGAAGACCTCAATAAACTGGCGGCAAAGGAAGAACCAAAAAAACTGAATATACCGTCTTCCTCAGAAGCGAATGATTTGCCCCCGGACAAAATGATATGCTCGACGCCAAAGATTTCTGACGCCATCCGAAACCACAGCATGACTGAAATAAAGCCGGAAATGAATCTGCTTAAGCCTAGTATGGGAACACCCTTGGTACAAGAGCTGCCCGTACTGAAGCCTCAAAAGATTTTCCCCAATATCAGCGATATCATTAGAAACGAAAATTTGAGATCTCTGAAGGAacacaaaatattacaaaatggtGTGGTACCTTTATTACAGCCTAACTTTGGTTTCGCCCAACAGAAAATTCAAGTCAAAAGCTTGGAGGCTCTAAAAGAGAATGTCTACGACAACGAATCTGAAGAGGAGTATATTGAGGAAGATGAACAGCCCATGGACTTAGTTTTAGACTTGAGCAAAAAGAAATGCGACGAGGACAGTAGGCGCCGTCAGGAGGAATTACCGCAAGATTTAACCAAGAAAACCCCGCCCCCTCCAAGCCCTGTGACACAGTTACCACCTAATATGGGGGAGTTGTTTGCTCAACAACTTCTTAAGACTCCTCCAAAAATAGACCAAGCAACATTGTACGCAACTCAACTGGCCCATTTTTATCGTAGCGGCTTCCCAGCTTTGTCCAATTGGACTGGGTTTCCCATAAACCCTCTGCTCTTCCCCACTTTAGCCCCTTCTTTGCCTCAAAATTCGCAAGATCTAAAGGAACGCATGCAGAGGTTTCAGTTATGCGGCGGATCCATGATAGCAGAAGATCTAAAAAATCTGCAGAATCTACAAAACTTACAACAGCAGTCTCTACGCAGCCCCACATCTAACTACAACGGATTTAAGATAGAACCCAAgccagaaataaaaaatttctccACTCCGAAAAAACCGGAAGACATGAAACCGCTAAGCTTGGACGTAGATACGAAATTCGGAGAAAATACGTCCAAAATGCAAAGCCCCATTCCTCAAATCAAAGACTTGATGCCATCCCCTAACTCCGTCAAGATGGTGATAAAAAATGGAGTGCTGATGCCCAAACAGAAGCAAAGGAGATACAGAACGGAACGACCGTTTGCCTGCGAACACTGTTCTGCTAGATTCACGTTGAGATCAAACATGGAACGGCACATTAAACAACAACATCCTCAATTCTGGTCCCAGCGGCAGCGTGGCAACGTTGGTAATCCCGGTCGTAAAGTTCAATCTCTACCCATGAAACCAAGCTATTGTGACCTCAGCATTCCAAATTACGAAGTAACGAAGACGCACGAGTACAACGATACCAAAGAACTATTAAACGAAAAGATTAAGCTAGCCATTTTAGAGCAACAGCTGAGAGCGAATCAAAGCGTTAGTCAGGAAGAGAGAAAAGACGAAGACGAGGACTGTGAATTAGTTATAGACGAGAACGAAGAGAAACCAGAACCAAAGACTGAAGAAATCAACCAAAGAAATGAGTACGACAGAAGTCGGATCTTGGAGGGGAAGCTGCAGCAGTTCAAGTCTGAACAAgtgagaaatattaaaaacgaAGAGAATCAGGATTTGGTGCCTGTCTCGAGGCTTCTGGATAACGCTTCCCAGCAGCAATTCAAAGAGTTCTTCAAACGGGAAGGTGAGGAAGCGGAAGTTGGCGGTGGCAGCGAAGAAGACGAAGAAGGCTTAGTCGCGAGCGGCAGCACAAGTGAGGGAAATGTTTCTGGTACTGACGAAAATCGATCAGAATCGGAGACGACTCAACCGGTGAAGAAAAAATCCGCTTACTCCCTAGCACCAAACCGCGTCAGCTGTCCCTACTGCAGTCGCAAATTCCCTTGGACTTCTTCCTTACGCAGACATATCCTGACTCATACCGGTCAGAAACCGTTCAAATGCAGCCACTGCCCCCTCCTATTCACCACCAAGTCCAACTGCGACCGACACTTGCTGCGCAAACACGGTAACGCGGCGACCACTATAACCAACGACGCCGGCAACAACAACAACGCCAATTATCTGATGAGGAACGTCCCCGAGCGCCCTTTCAAGTGCTCCAGCTGCCCTAGCAGCACATTCTCGACTTATTCAAACCTGAAGAAGCACATCAGCTGCAAGCACTCCACCAACGCCCAAGGGGACGACATCAAAGCTCAAGGGTACGAAGCCGGCAGTTCCGAAGACGAGAAAATTCCTACCACGGAAGCAAAAAACGATTGGGAAAGTCAACTGGCGTACAGCAAGTTGAGTGTGGATTTGTCTCAGACCGTACAAAACTCCGACCTACCGTTTAAGTGTCACCTGTGCGAAGGATCGTTCTCGGAACGACAAGATGCTCTGGACCATATCAGAGACAGACATGCTTCTGAGTACGACTTGCTGATGTCCAAGAATGCCCTAGACACCAGCGCCACCACTCCAGACGACGCTACCCACCAGGACGACGAAGAAAATGAAATCCGAGGCAAATTCCCTGATTACTCCAACCGCAAAGTAATATGCGCGTTCTGCATGCGCAGATTCTGGTCTGCGGAGGACTTGCGACGTCACATGCGTACCCACACAGGGGAAAGACCGTTTAGCTGCGACATCTGCCGACGCAGGTTCACGCTGAAGCACAGCATGCTGAGACACAGAAAGAAGCATAACGTCAACTTCGAGAACGACAACAATAACAGCGACGAAGACGGAAACAATATACCTCCCGGATTCGAGAAGCATTCTAAAGAGAGCAATTCGACGCACAAGAGCGAGAAGTCGGACGAATCGGATGGTACCGAAGGGGGAGACCTGATAAGCAATCTTTTGGGGTTAAGAGACAGGTCCATTGTAGATAAGGTTTTAAACGCTTCTCCAGATGACGCTGCGAAGCTCTTAGGGGTTAAGAATGGGGTTAAAGAATAg
Protein Sequence: MEASPSPNQMANRSDSGIFSSTTNTTIDQTDLSKNSDSDNRSDCSSPERKYVCPICDRILTSQHEFTLHIRSHNNENEVQDSEKGYTCRICQKVLSSNSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHSHKSENYESDGSVDSNSSKSTEFNNNKVEKVNSNKRKNDSPDCSSKKLRDNCSDSESSQSYKCPVCERSDFNTLSNLEAHLEDNHPEYPAKCNQCNNVFLNNKQLTTHKATVHENNISRHSVVGFKDLTFVDFSSEKFPHIARRECELNLHKVSGGLKYQCRKCSRAFPCNTSLEIHEKSCISVEHANGLDLTTISQPEIRRMEFFSRLNLLNTSPEKQIPPPQHNKPSNKLQEHLAKAMDNTKDLADIQSILSNINLQQLQAKQGELRLPTSKSQMEHSPEFQKNEQEEESQDLFAVEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNTNGTYHCNMCPHSSIDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKTTREEVKKSIIYHPSEDPTNEDLNKLAAKEEPKKLNIPSSSEANDLPPDKMICSTPKISDAIRNHSMTEIKPEMNLLKPSMGTPLVQELPVLKPQKIFPNISDIIRNENLRSLKEHKILQNGVVPLLQPNFGFAQQKIQVKSLEALKENVYDNESEEEYIEEDEQPMDLVLDLSKKKCDEDSRRRQEELPQDLTKKTPPPPSPVTQLPPNMGELFAQQLLKTPPKIDQATLYATQLAHFYRSGFPALSNWTGFPINPLLFPTLAPSLPQNSQDLKERMQRFQLCGGSMIAEDLKNLQNLQNLQQQSLRSPTSNYNGFKIEPKPEIKNFSTPKKPEDMKPLSLDVDTKFGENTSKMQSPIPQIKDLMPSPNSVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQFWSQRQRGNVGNPGRKVQSLPMKPSYCDLSIPNYEVTKTHEYNDTKELLNEKIKLAILEQQLRANQSVSQEERKDEDEDCELVIDENEEKPEPKTEEINQRNEYDRSRILEGKLQQFKSEQVRNIKNEENQDLVPVSRLLDNASQQQFKEFFKREGEEAEVGGGSEEDEEGLVASGSTSEGNVSGTDENRSESETTQPVKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNAATTITNDAGNNNNANYLMRNVPERPFKCSSCPSSTFSTYSNLKKHISCKHSTNAQGDDIKAQGYEAGSSEDEKIPTTEAKNDWESQLAYSKLSVDLSQTVQNSDLPFKCHLCEGSFSERQDALDHIRDRHASEYDLLMSKNALDTSATTPDDATHQDDEENEIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNVNFENDNNNSDEDGNNIPPGFEKHSKESNSTHKSEKSDESDGTEGGDLISNLLGLRDRSIVDKVLNASPDDAAKLLGVKNGVKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01227639;
90% Identity: iTF_00110836;
80% Identity: -