Basic Information

Insect: Rhagium mordax
Gene Symbol: Rreb1
Assembly: GCA_963680705.1
Location: OY796657.1:13330873-13335670[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.6e-05 0.003 19.7 0.9 1 23 80 102 80 102 0.99

2 16 0.008 0.91 11.9 0.3 1 23 115 137 115 137 0.98

3 16 0.00012 0.014 17.6 6.4 1 23 143 165 143 165 0.98

4 16 0.11 12 8.4 0.2 1 23 226 250 226 250 0.90

5 16 0.06 6.8 9.2 0.6 2 23 256 278 256 278 0.96

6 16 1.7 1.9e+02 4.6 1.4 1 20 324 343 324 345 0.86

7 16 0.15 17 7.9 0.1 1 23 473 495 473 495 0.96

8 16 0.0001 0.011 17.9 1.9 1 23 504 526 504 526 0.98

9 16 0.0017 0.19 14.0 3.1 1 23 532 555 532 555 0.97

10 16 0.001 0.11 14.7 3.0 1 23 957 980 957 980 0.97

11 16 0.001 0.11 14.7 0.4 2 23 1197 1218 1196 1218 0.97

12 16 0.26 29 7.2 6.3 1 23 1224 1247 1224 1247 0.97

13 16 0.087 9.8 8.7 1.1 1 20 1276 1296 1276 1297 0.94

14 16 0.18 20 7.7 0.9 1 23 1357 1380 1357 1380 0.96

15 16 0.034 3.9 9.9 0.4 3 23 1427 1447 1425 1447 0.93

16 16 0.015 1.7 11.0 5.9 1 23 1453 1475 1453 1475 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.6e-05	0.003	19.7	0.9	1	23	80	102	80	102	0.99
2	16	0.008	0.91	11.9	0.3	1	23	115	137	115	137	0.98
3	16	0.00012	0.014	17.6	6.4	1	23	143	165	143	165	0.98
4	16	0.11	12	8.4	0.2	1	23	226	250	226	250	0.90
5	16	0.06	6.8	9.2	0.6	2	23	256	278	256	278	0.96
6	16	1.7	1.9e+02	4.6	1.4	1	20	324	343	324	345	0.86
7	16	0.15	17	7.9	0.1	1	23	473	495	473	495	0.96
8	16	0.0001	0.011	17.9	1.9	1	23	504	526	504	526	0.98
9	16	0.0017	0.19	14.0	3.1	1	23	532	555	532	555	0.97
10	16	0.001	0.11	14.7	3.0	1	23	957	980	957	980	0.97
11	16	0.001	0.11	14.7	0.4	2	23	1197	1218	1196	1218	0.97
12	16	0.26	29	7.2	6.3	1	23	1224	1247	1224	1247	0.97
13	16	0.087	9.8	8.7	1.1	1	20	1276	1296	1276	1297	0.94
14	16	0.18	20	7.7	0.9	1	23	1357	1380	1357	1380	0.96
15	16	0.034	3.9	9.9	0.4	3	23	1427	1447	1425	1447	0.93
16	16	0.015	1.7	11.0	5.9	1	23	1453	1475	1453	1475	0.98

Sequence Information

Coding Sequence: aTGACTGAAATAAATTCCCTGCACGACAAAAAGCTCTATACCTGTTTTTGTGTTCCAGTTACCGAAATGGAGGCATCTCCCTCACCAAAGCAAATGGCCAAAGAAACCCTAGCTAATCGCAGCGATTCAGGCATTTTCTCTACTACCACCAACACGTCAATCGACAACGACTTTTCGAAAAACTCCGAAAATTGCGACACAGACAACAGAAGCGACTGTTCCTCACCCGAACGGAAATACGTTTGCCCTATCTGCGACAGAATGCTAACATCTCAGCACGAGTTCACGTTACACATTAGGTCTCATAATAACGAAAATGAGGTGCAGGACACCGAGAAAGGTTATACTTGCAGGATATGCATGAAGGTTCTAAGCTCAAGTAGCAGCCTGGATCGCCACGTTCTGGTGCATAGCGGAGAACGACCATTCCACTGCAAGTACTGCGGGGATACTTTTACAACGAATGGCAATATGCACCGGCACATGAGGACTCACTCCCATAAAACTGAAAACAGCTATGAATCGGATGGAAGCACCGACAGCAGTAGTTCCAAAAGTACCGAGTTTAACAATAACAAAGTCGAAAAATACAACAACAAGAGAAAGAATGACAGCCCGGAGACCACCAGTAAGAGACAGCGCGAGAGCTGCAGCGACACGGATACAAGCCAATCCTTCAAATGTCCTGTGTGCGAACGCACCGATTTTAACTCTGTATCCAATCTAGAGACCCACTTGGAGGATAATCATCCCGATTACCCGGCCAAATGCAATCAATGCCAGCAAGTTTTCTTGAATAATAAACAGTTGATAGTGCACAAGGCAACCGTCCACGAAAATGTAATATCTCGACATCCGGTGGTAGGCTTCAAGAATTTGACTTTTGTGGATTTTTCCAGTGAAAAGTTTCCACACATAGCTCGAAGAGAGTGCGAAATGAATTTACACAAAGTCTCCGGAAGTCTAAAATTTCAGTGCAGGAAATGCAACAGAGCATTCCCTTGCACCAACTCTCTGGAAATACACGAAAAGAGCTGTGTTTTGATGGAATGCGCCAATGGCTTGGACCTCAGCACTATTTCTCAACCAGAAATAAGACGCATGGAGTTTTTCTCCCGGTTAAATCTGGTGGATAATTCTCCGGAAAAACAGCCCCCTGCTATTCAAGTTGAGAAAGCCCCGAACAAACTTCGAGAACATCTTGCAAAGGCAATGGACAACACTAAAGATTTAGCTGACATTCAGTCAATCTTATCTAATATAAATTTGCAACAACTTCAAGCTAAACAGCATGAGTTGAGGCTACCTACGCCTAAGCCTATCCTAGAGCAATCCGATTATCACAAAAACGAGCAAGAGGAGGAATCGCAAGATTTATTTGCTGTGGAGTTTAGGAAGATGAAATTGCGAGGTGAGTTTCCTTGTAGACTGTGCACGGCGGTGTTTCCCAATTTACGTGCGCTTAAAGGTCACAACCGTGCTCATCTCAATGGCAACACAAACGGCACTTACCACTGTAATATGTGTCCACATTCTTCAATTGACAAAGCAGCTTTAATCCGCCATATGCGCACTCACAATGGAGATAGACCCTATGAGTGTTCATTGTGCAATTACGCGTTTACCACCAAGGCCAACTGCGAAAGACATTTAAGAAATAGACATGCTAAAACAACTAGAGAGGAAGTGAAAAAATCCATAATATACCACCCATCAGAAGATCCAACTAATGAAGACCTAAACAAATTAACAACAAAGGAGGAATCAAAGAAACTTAATGTCACATCATTTATAGAACCTAGTGATTTAAGCTCGGATAAGGTGCATTGCTCCACGCCGAAAATACCTGAAATAGTGCGAAACCATGTGTCTGAAATAAAACCTGAGATTAACTTGTCTAAACCTCTTGCAACACCGCTAATATCAGAATTGCCATTATTGAAACCTACCAAGATTGTTTCTAACATAAATGATATTATACGCAATGAGAACCTGAGATCTTTAAAAGAACACAAGCTCATGCATAATGGAGCAACTCCGATGCTTCAACATAATTACGGATTTTCACCACAAAAAATTCAGGTGAAGAGTTTAGAAACGCTAAAAGACAATATTTATGACAATGAATCTGAAGAGGAATACGTAGAAGAGGATGAGCAGCCCTTGgacttggctttggatttgagTAAAAAGAAATCCAACGAAGACAGTAAACGCATTCAGGAAGATCTACCACaggatttaacaaaaaaaacgCCTCCACCTCCAAGCCCAAGTACTCCTCAGTTCCCGCCCAATATGGGCGAGATATTTGCTCAACAGTTACTTAAGACGCCTCCGAAAATAGACCCTGCTGCTTTATATGCATCTCAATTAGCTCACCTGTACCGTAGCGGCTTTCCTGCTCTATCCAACTGGACCGGCTTTCCTCTAAATCCTTTACTTTTCCCTACATTGCCTCCATCATTACCGCAAAACCCACAAGATATTAAAGAGCGAATGCAGAGGTATCAATTGTGTGGTGGGTCTATGATTGCGGAGgattttaaaaacttacaaaacctTCAGAATTTGCAGCAACAGTCACTTCGTAGTCCAAATATAAACTATAATGGTTATAAACTGCAGGAACCTAAACCTGATATGAAAATGGAAAACAATTTTTCCACTCCAAAGAAACCAGAGGACTTCAAACCCCTCAGCTTGAACGTGGATAATCATTTTAGTGAAAATCTAGCAAAATTACAAAGTCCAATACCTCAAAACAAGTCGGACTTAATGCAGTCACCTAACTCTGTAAAAATGGTGATAAAAAATGGTGTATTAATGCCAAAGCAGAAGCAAAGAAGATACAGAACCGAACGACCGTTTACGTGCGAGCACTGCTCAGCTAGATTTACGTTGAGGTCGAACATGGAACGACATATTAAGCAGCAACATCCCCAATTTTGGTCGCAGCGACAGAGGGGTAGTGTGGGCAATCCAGGACGCAAAGCCCAGACTTTACCGGTAAAGTCCAGCTATTGCGACCTTAGCATACCTAACTATGAAGCTCCTAGAACTCAGGATTACAACGACACTAAAGAACTTTTAAACGAAAAACTTAAGTTCGCAATTTTAGCACAGCAGCTTAGGGCAAATCAAAATGCCAACCAGGAAATGAAGAAGGACGAAGACGAAGATTGCGCCCTAGTAATAGATGAAAACGATGAGAAGAACGAACCAAAGACTGAGGAACACAACCAAAGAGATGAGTACGAGAGAAGCCGAATTTTAGAAGAAAAGTTAAAAGAGTTACATCAGTTTAAATCCGAAGTTAAGAACACAAAAAATGAGGAAAACCAAGATTTGGTACCTGTATCGAGACTTCTTGATAACGCTTCCCAGCAACAATTCAAAGAATACTTTAAGAGGGAAGGAGAGGAACAAGAAGTGGGTGGGGTTAGTGAAGAAGATGAGGAGGGGCTGGTGGCTAGTGGTAGCACGAGTGAAGGAAATATTTCTGGAACAGATGAGAACagATCTGAATCCGAGACAACTCAACCAGTCAAAAAAAAGTCTGCCTATTCGCTGGCTCCAAATCGAGTCAGCTGCCCGTACTGTAGTCGCAAGTTTCCATGGACTTCTTCTTTGCGTAGACACATCCTAACCCATACCGGACAAAAGCCGTTCAAATGCAGCCACTGTCCGCTTCTCTTTACCACTAAATCTAACTGCGACCGCCATTTATTACGCAAACACGGAAACGCCGCCACTACGATCAGCAATGATGCTAGCAACAACAATAACGCCAATTATTTGATGCGAAATGTCCCAGAGCGTCCCTTTAAGTGCTCCAGTTGCCCCAGCAGCACATTCTCGACCTActcgaatttaaaaaaacacattagCTGCAAACATTCGACGAATGCGCAAGGGGATGACATCAAAGCACAAGGGTACGAAGCAGGCAGTTCTGAGGATGAAAAAATTCCTAATTTCGATATCAAGAATGACTGGGAAACCCAGTTGGCTTATAGCAAGTTAAACGTAGATCCGTCGCAGACAGTACAAAACTCCGACCTGCCATTTAAGTGCCATTTGTGCGAGGGCTCGTTTTCAGAAAGACAGGATGCCTTGGATCATATCCGCGATAGGCATGCTTCTGAGTATGACTTGCTTATGTCGAAGAACGCTTTGGACTCCAGCGCTACTACACCTGACGACGCAACCCACCAGGAGGATGATGAGAGCGAGATTCGTGGGAAATTTCCGGATTACTCTAATCGTAAAGTCATTTGTGCTTTTTGTATGCGCAGATTCTGGTCCGCGGAGGACTTAAGACGTCATATGCGTACACATACTGGCGAACGACCTTTTAGCTGTGACATATGCCGTCGCAGATTCACTTTAAAACATAGTATGCTGCGTCATAGAAAAAAACACAACGTGAATTTcgaaaatgaaaatatcaatAGTGACGAAGATGGAAACAATATTTCTCCAATGTATGATAAGTTTATTAAAGGGGAAAACAATAACTCTATGCAAAAAGGGGTTGAAAAAACTGATGAATCTGATGGTACTGAGGGAGGGGATCTAATAAGTAACCTCTTAGGATTAAGGGACAGAACTATCATTGATAAAGTCTTGGCAGCTTCAGCAGATGATGCTGCCAAGCTTTTAGGGGTTAAAAATGGAGTTAAagaatag
Protein Sequence: MTEINSLHDKKLYTCFCVPVTEMEASPSPKQMAKETLANRSDSGIFSTTTNTSIDNDFSKNSENCDTDNRSDCSSPERKYVCPICDRMLTSQHEFTLHIRSHNNENEVQDTEKGYTCRICMKVLSSSSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHSHKTENSYESDGSTDSSSSKSTEFNNNKVEKYNNKRKNDSPETTSKRQRESCSDTDTSQSFKCPVCERTDFNSVSNLETHLEDNHPDYPAKCNQCQQVFLNNKQLIVHKATVHENVISRHPVVGFKNLTFVDFSSEKFPHIARRECEMNLHKVSGSLKFQCRKCNRAFPCTNSLEIHEKSCVLMECANGLDLSTISQPEIRRMEFFSRLNLVDNSPEKQPPAIQVEKAPNKLREHLAKAMDNTKDLADIQSILSNINLQQLQAKQHELRLPTPKPILEQSDYHKNEQEEESQDLFAVEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNTNGTYHCNMCPHSSIDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKTTREEVKKSIIYHPSEDPTNEDLNKLTTKEESKKLNVTSFIEPSDLSSDKVHCSTPKIPEIVRNHVSEIKPEINLSKPLATPLISELPLLKPTKIVSNINDIIRNENLRSLKEHKLMHNGATPMLQHNYGFSPQKIQVKSLETLKDNIYDNESEEEYVEEDEQPLDLALDLSKKKSNEDSKRIQEDLPQDLTKKTPPPPSPSTPQFPPNMGEIFAQQLLKTPPKIDPAALYASQLAHLYRSGFPALSNWTGFPLNPLLFPTLPPSLPQNPQDIKERMQRYQLCGGSMIAEDFKNLQNLQNLQQQSLRSPNINYNGYKLQEPKPDMKMENNFSTPKKPEDFKPLSLNVDNHFSENLAKLQSPIPQNKSDLMQSPNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGSVGNPGRKAQTLPVKSSYCDLSIPNYEAPRTQDYNDTKELLNEKLKFAILAQQLRANQNANQEMKKDEDEDCALVIDENDEKNEPKTEEHNQRDEYERSRILEEKLKELHQFKSEVKNTKNEENQDLVPVSRLLDNASQQQFKEYFKREGEEQEVGGVSEEDEEGLVASGSTSEGNISGTDENRSESETTQPVKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNAATTISNDASNNNNANYLMRNVPERPFKCSSCPSSTFSTYSNLKKHISCKHSTNAQGDDIKAQGYEAGSSEDEKIPNFDIKNDWETQLAYSKLNVDPSQTVQNSDLPFKCHLCEGSFSERQDALDHIRDRHASEYDLLMSKNALDSSATTPDDATHQEDDESEIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNVNFENENINSDEDGNNISPMYDKFIKGENNNSMQKGVEKTDESDGTEGGDLISNLLGLRDRTIIDKVLAASADDAAKLLGVKNGVKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01227639;
90% Identity: iTF_01370160;
80% Identity: -