Pcor013355.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Platyscapa corneri
Gene Symbol
-
Assembly
GCA_018907185.1
Location
JACCHW010000019.1:5049983-5054841[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.029 9.9 8.6 0.5 1 23 681 703 681 703 0.85
2 16 0.36 1.2e+02 5.2 1.7 1 19 709 727 709 730 0.91
3 16 0.47 1.6e+02 4.8 1.1 1 23 735 757 735 757 0.94
4 16 0.00096 0.32 13.2 1.6 3 23 766 787 765 787 0.97
5 16 0.0043 1.4 11.2 2.8 1 23 794 817 794 817 0.96
6 16 0.00033 0.11 14.7 1.2 1 23 823 846 823 846 0.94
7 16 1.7e-07 5.7e-05 25.1 1.8 2 23 880 901 879 901 0.97
8 16 7.5e-06 0.0025 19.9 0.2 1 23 907 929 907 929 0.99
9 16 0.00081 0.27 13.5 2.8 2 23 941 963 940 963 0.95
10 16 0.019 6.5 9.1 2.3 1 23 969 992 969 992 0.95
11 16 0.014 4.7 9.6 2.5 2 23 1014 1036 1013 1036 0.93
12 16 0.00036 0.12 14.6 1.0 2 23 1043 1065 1042 1065 0.96
13 16 4.3e-05 0.015 17.5 1.0 3 23 1074 1094 1072 1094 0.96
14 16 0.0095 3.2 10.1 2.4 1 23 1100 1123 1100 1123 0.94
15 16 0.29 98 5.4 4.3 2 23 1130 1151 1129 1151 0.96
16 16 0.0042 1.4 11.2 2.8 1 23 1157 1179 1157 1179 0.98

Sequence Information

Coding Sequence
ATGGCCTCGAGTTCTAAACAAATAAAAATAGTTGATACATGCAGTGATTCTACTAATCTTATAAACAAGTTTAATAAAAGTACAGACTTAAAAACTATGAAGTCTATTGTAGAAGAATCGTCTGAAGAAAATAATGATAAACAAAATTTATCAGATATCCTGACAAATAAAAATAAATTATTAGACAACGAAGATCATAATTATAGTGATCCTCATTTAATAAAACCAGAAGACATCGAAAATATTGCAAATTCCAATTTTAAAAGTAATATTATATATTCTAAAGTATCTCATGGAGGAAAAGATAAATATATTGGATTAAAAATAACAAATTTAAATGATCTTAAAAAAGCAACTCCTCGCCTTAAGTTACCAGCATTATTTTCATCAACAGCTATTAAGAAAACTCCTCCAGTACCTGAAGAAATTAAAGAAAAATTATATAAATATTGCCGTACTTGTGCAGGATTAAAAGTTCCATTAGTTGATATATTTAGTGAGAAGGGAATTCAAATGAGACTAAGTCAACAAATTCAACATTTAGAAGATATTAATAAGCATGACAGCTTATCAACCCAAATGTGTATGGATTGTATTTGTGATCTGAAGATGAGTTATAAATTTTTCATGCAAATTAAAAAAGCTGAAATGAAATTAAAATCAATTTGTAATTCATTTAATGATTCTATATTTAAATCAAGTTCAACAAATATTGAAAATCAATCTATTGAAAAAAATGATGGAAAGATTGTTTTTTCAAATGAAGATTCAATGAAAAAGAATAATCTTGATTCTGAAAATAAAGATATTAAAAATGAATTAAGTGACTATTCTTTTGGCGGAAACAATGAAAGTTGTAATGATGAAAATGAATCTATTGAAGAATTTGATCCTGATAATCCTTACGATTCAAATGAAAATGAAGCAAATAAAAGTATGGAATCTGAAACTTGTAATAATGATATTCTGGAAGATCAGAAAACAACTGCATATAGATATGATGAATCATTAAATGCATATATTAAAATTGAAACTAGTGAAGAAAGTGAAACAAGTAATGAACAAAAACCCAAAATTGAAAGTAATACTATTAAAATTGAGACTGCTAGTTCTGGTTCTTTAAATCAATCTCAAAAAATGCCTAATATATTAAGAAGAAAATTATCTAGTGGAAATACAAGTGATGAAAGTATGGACAATACTAATAAAATAAATTTTCAAAAACTAAATATTGGGTTGAAAGATTTAAAAATACCAAAACTAAATCTTCAAGATACTGTGAATATTAAAACGGAAGAAAATGGTGTAATGTATGTTACTGCAAAAGGATCAAAACCAAATGAAATGCTTTTAATAAAGGTAAAAAAATTGGGTAAATTAATGGAAAAGAAAACTGAAAAAATACAAAGTAAAAAAAAGTCTGATTCATGTGTAGTGCATAAGATTTTTCCAAGATATGACACTCATAGTCAAAAAGGTAGTTACATTGATGAACAAATTGAGCAGTATAAAAAGAGAAGGGTTGAAGTGTTAGGACAAACTGCTAATATGTCAGAAACAAATGATGATGAGAAAGAATCAGAAATTAGTCTTTTAAGTAAAGATAATTCAACTGATATAGAAATTCTTGATCAAGAAGAGCAGGAACAAATTGATGAAACAGAAGAAGTTAAAAAGAGTGAAGGTGATAATATTTCACAAGTGCTTAAAGAGATGCCTTCTATTGCACCACAGTATGTTTCGCGTTTGGAAAAATTGAAGCAACGATGGAAAGATATTAAGAAAAGACACGATGCAATAAATAAAGATCTAGCAGAAGACTGTACAGACAGGTTGAGATCAATTTTAAGACAGAAAGATGAATATTTGTTAGATTTTATTAATTATTTAAAACAGCGTAGAATTGTAGCATCACGTTTAAAAGATGAAGACATCATTTCGCTTTATGAAGTGAAAAATAACGTAGTCTTAGAAAGATTACCTACAATTACAATTACTGAACCAGAAGAAGATATTGATCCTTTTGAATGCAAGGAAAGCTATCAATGTGACTTTTGTGACCAGTCTTTTCCAAACAGAGAAATGGAATTTGAGCATGCGAAAATTCATGATTTCAAATTAATGCATTATTGCGAAGATTGTAAATATGAATTTCCAACACATAAGGCAAAACGTGCTCATAACATTAAGTGTGTACAGAAGTTTTTATGTAATTATTGTGATATGATATTAGAATCTAAAGGAAAGAAACGACAACACGAACAGAAACATTGTGATGAAATGAACGGTCAGCTTTGCGATTTATGTGGTGAAAAATTCAAACATCAAGGGACTTTAGATCAACATGTAAAGTCTCGACATATGCAACTAGAGAAGATATATAAATGTCCACAATGCACAAAAAGATTTGCCTTCAGAACAAAATTAACCTTTCACTTAAAATCTGTGCATACTACTAGTCGAGCTTTTCTTTGCGAAGATTGTGGATCTGATTTTAAAAATCCTGCAAGTCTAAGACATCATAGAATTCGAAAACACCAGTCAGTGAATAATAAAAAAGAATGTAACATTTGTCACAAGCTGGTTCCAGTTTATAGTATGTCAAAACATATGCACACGCACAAGGCATACACCATTGAATGTCCTCATTGCGATAAAATGTTTAAAAATACTTCAACCTTGAAGCAGCATATAAGAATTCACGAGGATCAACGACAATATAAATGCGACATGTGCGGTGTAGGGTTTAATAGACGAGATGGCTTGAGGTTGCATTTGAAAGTTCACGAGAAAACAGATAGCAGAGGCCTGAAGGAATGCTCGTGTCAGGTGTGCGGTGAGAAGTTTCCAAATCACTCGATGCTTGTGATTCATAGGAACCGCACTCATAAGGATGGCAGAAATTACACGTGTCACATATGTAACAGATCAATGATATCTACTCGATCGCTGGAATGGCATTTATCGCACATACACAATGAAAGGATGCCGGGTATTGTGAAAGATGATTCCAGCATAGACTCTGAAACGAAGCGAGTTTCTTGCTACCACTGCGATAAAACATTTAAGACCGAGATGATATTACGAACGCATGTGAAGAATACGCATGTGCAGAAGGAGCCTGTGAAATGTTTGGACTGCGATTTAATGTTTACATCGGAGGTGCGTTTAAAGCACCATATGATGGTAACCCATAATCGGTTAGAAGGAACTTTAGCCTGTCCGCATTGTCCTAAAAGATTTGTTAATCAGTTAAGATTAAAAACCCATATGATATCTCATTCGGATGAAAGACCACATAGCTGTGATCTTTGTGGATTCATGTTAAAGACGAAAATACAGCTGATTAAGCACAAACAAAATAGACATAGCAATGAAAGACCACTTCAATGCAAATACTGTTCATGGAGATGTAAACAAGTCAGTGCACTGGTTTGTCATGAAAGAACTCACACGAATGAAAGACCGTACAGTTGTAGTGTTTGTAAGCAGAAATTTAAATATTTAGGTGATAAGAATAAACACGAAAGACGACACGAGAGTCTCGGTGGTTCTGGATTTAAGAGGATTGTTACTGGAAGAAATACCAATAAAATTCATAGAAAGAAAGAGGAAGATTCACCGGATCAAGATTCCGATCAAGAACAAGAAGAATATGAAATGGAACATGACGGAGATGAAGAGTACGAAGATCAAGAAGAGAATATTAAAGTAGAAGGGGAACACTTTCATGAGTCGCAACTTGTCAAATTTGAGACCGGCGAAATCATAACTGAAGAATCAGAAGCATCCTTTGAACGGATGTATGTTGAGGACACATCACAAGATACGAACAATGTCAATCAAGTTGTAATGGGTATTGAAGAAACAACAGTTTATACAGAGGAAGTTACGGCCGATCATATCGAACCAGAAATAATCACTAATGATATTATGGATGAACATATGTTGCAACCAGGAACTGTTGTTCATCTTCAACAACAAGATGAAACAGGCAAGATTCAAGTGATACCTGTTATGCTGTCTTTACCAGACTTATCAGATGCTGCATCTGAAGTTAGTTTAGCAACGGCATCTATAATGTACAATAATTAG
Protein Sequence
MASSSKQIKIVDTCSDSTNLINKFNKSTDLKTMKSIVEESSEENNDKQNLSDILTNKNKLLDNEDHNYSDPHLIKPEDIENIANSNFKSNIIYSKVSHGGKDKYIGLKITNLNDLKKATPRLKLPALFSSTAIKKTPPVPEEIKEKLYKYCRTCAGLKVPLVDIFSEKGIQMRLSQQIQHLEDINKHDSLSTQMCMDCICDLKMSYKFFMQIKKAEMKLKSICNSFNDSIFKSSSTNIENQSIEKNDGKIVFSNEDSMKKNNLDSENKDIKNELSDYSFGGNNESCNDENESIEEFDPDNPYDSNENEANKSMESETCNNDILEDQKTTAYRYDESLNAYIKIETSEESETSNEQKPKIESNTIKIETASSGSLNQSQKMPNILRRKLSSGNTSDESMDNTNKINFQKLNIGLKDLKIPKLNLQDTVNIKTEENGVMYVTAKGSKPNEMLLIKVKKLGKLMEKKTEKIQSKKKSDSCVVHKIFPRYDTHSQKGSYIDEQIEQYKKRRVEVLGQTANMSETNDDEKESEISLLSKDNSTDIEILDQEEQEQIDETEEVKKSEGDNISQVLKEMPSIAPQYVSRLEKLKQRWKDIKKRHDAINKDLAEDCTDRLRSILRQKDEYLLDFINYLKQRRIVASRLKDEDIISLYEVKNNVVLERLPTITITEPEEDIDPFECKESYQCDFCDQSFPNREMEFEHAKIHDFKLMHYCEDCKYEFPTHKAKRAHNIKCVQKFLCNYCDMILESKGKKRQHEQKHCDEMNGQLCDLCGEKFKHQGTLDQHVKSRHMQLEKIYKCPQCTKRFAFRTKLTFHLKSVHTTSRAFLCEDCGSDFKNPASLRHHRIRKHQSVNNKKECNICHKLVPVYSMSKHMHTHKAYTIECPHCDKMFKNTSTLKQHIRIHEDQRQYKCDMCGVGFNRRDGLRLHLKVHEKTDSRGLKECSCQVCGEKFPNHSMLVIHRNRTHKDGRNYTCHICNRSMISTRSLEWHLSHIHNERMPGIVKDDSSIDSETKRVSCYHCDKTFKTEMILRTHVKNTHVQKEPVKCLDCDLMFTSEVRLKHHMMVTHNRLEGTLACPHCPKRFVNQLRLKTHMISHSDERPHSCDLCGFMLKTKIQLIKHKQNRHSNERPLQCKYCSWRCKQVSALVCHERTHTNERPYSCSVCKQKFKYLGDKNKHERRHESLGGSGFKRIVTGRNTNKIHRKKEEDSPDQDSDQEQEEYEMEHDGDEEYEDQEENIKVEGEHFHESQLVKFETGEIITEESEASFERMYVEDTSQDTNNVNQVVMGIEETTVYTEEVTADHIEPEIITNDIMDEHMLQPGTVVHLQQQDETGKIQVIPVMLSLPDLSDAASEVSLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00845412; iTF_00305805; iTF_00708123; iTF_00464172; iTF_01524206; iTF_01219255; iTF_00305182;
90% Identity
-
80% Identity
-