Pnir051478.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pleistodontes nigriventris
Gene Symbol
-
Assembly
GCA_903653215.1
Location
CAHLDJ010000081.1:127471-131640[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.032 10 8.6 0.5 1 23 626 648 626 648 0.85
2 16 1.9 6.2e+02 3.0 1.5 1 19 654 672 654 675 0.90
3 16 0.5 1.6e+02 4.9 1.1 1 23 680 702 680 702 0.94
4 16 0.001 0.33 13.3 1.6 3 23 711 732 710 732 0.97
5 16 0.0047 1.5 11.3 2.8 1 23 739 762 739 762 0.96
6 16 0.00035 0.11 14.8 1.2 1 23 768 791 768 791 0.94
7 16 1.8e-07 5.8e-05 25.1 1.8 2 23 825 846 824 846 0.97
8 16 8.1e-06 0.0026 19.9 0.2 1 23 852 874 852 874 0.99
9 16 0.00088 0.28 13.5 2.8 2 23 886 908 885 908 0.95
10 16 0.021 6.7 9.2 2.3 1 23 914 937 914 937 0.95
11 16 0.015 4.8 9.7 2.5 2 23 959 981 958 981 0.93
12 16 0.0034 1.1 11.7 0.7 2 23 988 1010 987 1010 0.96
13 16 4.7e-05 0.015 17.5 1.0 3 23 1019 1039 1017 1039 0.96
14 16 0.0069 2.2 10.7 2.5 1 23 1045 1068 1045 1068 0.95
15 16 0.31 1e+02 5.5 4.3 2 23 1075 1096 1074 1096 0.96
16 16 0.0045 1.4 11.3 2.8 1 23 1102 1124 1102 1124 0.98

Sequence Information

Coding Sequence
ATGTCgaaaaaaaatcagttattagACAACGAAGATCATAATTATAGTGATcctcatttaataaaaacagataatgttgataatattggaaatcttaattttaaaagtaatattatatactcCAAAGTATCTCATGGAGGAAAAGATAAATACAttggattaaaaataacaaatataaatgatcTTAAAAAAGCAACTCCTCGTCTTAAGTTACCAGCAATTTTGTCCTCGAcagttattaagaaaaatccTCCTGTACCtgatgaaattaaagaaaaattgtataaatactgCCGTACTTGTGCAGGACTAAAAGTTCCATTAGTTGATATATTTAGTGAAAAAGGAATTCAAATGAGACTAAGTCAACAAATACAACATTTAGAAGACATTGATAAACATGATAGCTTGTCGACTCAAATGTGTATGGATTGCATTTGTGATTTGAAGatgagttataaattttttatgcaaataaagaaagctgaaatgaaattaaaatcaatttgtaattcattcaatgattcaatatttaaatcaattcagacaaatattgaaaatcaaccTACAGAAAAAAATGAGCCAAAGTCTGCTTCTTCAAGTGAAGAATCAACAACACAATATAGCaatgatttagaaaataaagataaaagtgaACAAAGAGACTATACTTTCTGTGAAGCTAATGAAAGTTGTAATGATGAAAATGAATCTATCGAAGAATTTGATCCAGATAATCCTTATGAtccaaatgaaaatgaattaaataaaagtacagaaTCTGAAATTTGTAATACTGACATCTTAGAAGAGCACAAAACAGCTGCTTATAGATATGATGAATCATTAAATGCATATGTTAAAATTGATTCACAAGAAGGAAACCAAATAAGCAGtgaacaaaaattcaaatctgaaagtaatattaataaagtacttGAATCTGTTAGTTTTGGATCTTTAAATCAATCTTCAAAAATGCCCAATATATTAAAGAGGAAGTTATCTAGTGGAAATACAAGCGATGAAAGTActgataatacaaataaaataaattttcagaaattgaatattggattaaaagatttaaaaattccaaaattgaATCTTCAAGatactgttaatataaaaacagaagaaaatgGAGTAATGTATGTTACTGCAAAAGGATCAAAACCTAAtgaaatgcttttaataaaagtaaaaaaaatgggcaaattaatagaaaagaaagCAGATAAaacacaaagtaaaaaaaaggctGATTCATGCATAGTTCATAAGATATTTCCAAGATATGATAGTCACAGCCAAAAAGGTAGTTATATTGATGAACAAATAGAGCAGTATAAAAAGAGAAGGGTTGAAGTTTTAGGACAAACTGCTACTATATCAGAAATGAATATTGAAGAGAAAGAAACAGAAATTAGAGTTACAGGTAAGGATAACTCCGCTGATATAGAAATTGTTGATCAAGAAGAGCAAATTGAAGATACAGAAGAAGTTAAAAAGGATGAAAGTGATAATATCTCACAAGTGCTTAAAGAGATGCCTGCTATTGCACCGCAATATGTATCGCGTTTGGAAAAATTGAAGCAACGATGGAAAGATATTAAGAAGAGACACGATGCAATAAATAAAGATCTAGCAGAAGATTGTACTGATAGGTTGAGAACAATTTTAAGACAAAAAGacgaatatttattagattttattaattatttgaaacagcGTAGAATTGTAGCATCTCGTTTAAAAGACGAAGATATTATTTCACTATATgaagtgaaaaataatgtagttttaGAAAGATTACCAACGATATCAATTAATGATgtagaagaaaatattgatccttttgaattaaaagaaagttatcAGTGTGATTTTTGTGATCAATCTTTTCCAAATAGAGAAATGGAATTTGAACATGCGAAAATTCATGATTTCAAGTTAATGCATTACTGCGaagattgtaaaaatgaatttcccACTCATAAAGCAAAACGTGCTCATAGCATTAAATGTGTACAGAAGTTTTTGTGCAATTATTGTGATATGATTTTAGAATCTAAAGGAAAAAAACGGCAGCATGAACAAAAGCATTGTGACGAACAGAATGGCCAGCTTTGCGATTTATGCGGTGAAAAGTTCAAGCACCAAGGGACTTTAGACCAACACGTAAAATCTCGACATATgcaattggaaaaaatttacaaatgccCACAGTGCACAAAAAGATTTGCATTCAGGACAAAATTAACATTTCACTTGAAATCTGTGCATACTACTAGTCGAGCTTTTCTATGCGAGGATTGTGgttctgattttaaaaatcctGCAAGTCTGAGACATCACAGAATTCGAAAACATcaatcaatgaataataaaaaagaatgttctATCTGTCATAAGCTGGTTCCAGTTTACAGTATGTCAAAACACATGCATACACACAAGGCATATACCATTGAATGCCCTCATTGCGATAAAATGTTCAAGAATACTTCAACTTTGAAGCAGCATATAAGAATTCACGAAGATCAACGCCAATACAAATGTGACATGTGTGGTGTTGGATTCAATAGACGAGATGGTTTGAGATTGCATTTGAAAGTTCATGAGAAGACTGACAGCAGAGGGCTAAAGGAATGCTCGTGTCAGGTTTGTGGTGAGAAGTTTCCGAATCATTCGATGCTTGTGATTCATAGGAACCGCACACATAAGGATGGTAGAAATTACACTTGTCACATATGCAACAGGTCTATGATATCCACTCGATCGTTAGAGTGGCACTTGTCTCACATACACAATGAAAGGATGCCGGGTATTGTGAAAGATGACTCGAGCATAGACGCCGAAACTAAGCGAGTTTCTTGTTATCACTGCGATAAAACTTTTAAGACCGAAATGATATTGCGAACGCATGTAAAAAATACGCACGTGCAAAAGGAGCCAGTAAAATGTTTGGACTGCGATTTGTTATTTACATCTGAGGTGCGTTTGAAGCATCACATGATGGTAATGCACAATCGCTTAGAAGGAACCTTAGCTTGTCCACATTGTCCTAAAAGATTTGTCAATCAGCTAAGATTAAAAACGCATATGATTTCTCATTCGGATGAGAGACCACATACTTGTGAACTTTGTGGTTTcatgttaaaaacaaaaatacaactTATTAAGCACAAGCAAAATAGACACAGTAATGAAAGACCACTCCAATGCAAATATTGTTCGTGGAGATGTAAACAAGTTAGTGCATTAGTCTGTCATGAACGAACCCATACAAATGAAAGACCTTACAGTTGTAGTGTATGTAAgcagaaattcaaatatttgggtgataaaaataaacacgaAAGACGACACGAAAGCCTTGGTGGTTCTGGATTTAAGAGGATCGTTACTGGAAgaaataccaataaaattaacagaaaGAAAGAGGAAGATTCACCTGATCAAGATTCCGATCAAGAACAGGAGGATTATAAGTTGGAACAGGAAGTAGATGAAGAGTATGaagatgaagaaaatattaaagtagaaGGGGAAACTTTTGACGAATCGCAAATTGTAAAATTCGAGACTGGAGAAATCATAGCCGAAGAATCAGAGGCATCTTTTGAAAggATGTACGTCGAAGATACATCACAAGATACAAATGATGCAACTCAAGTTGTAATGGGTATGGAAGAAACAACAGTTTACACAGAAGAAGTTACAGCTGATCACATCGAACCTGAAATCATTACTAATGATATTATAGATGAACATATGTTACAACCAGGAACTGTTGTTCACCTTCAACAAGAAGATGAAACAGGCAAGATTCAAGTAATACCAGTTATGCTTTCTTTACCAGATTTATCAGACGCCACCTCTGAAGTTAGTTTAGCGACCGCTTctattatgtacaataattaa
Protein Sequence
MSKKNQLLDNEDHNYSDPHLIKTDNVDNIGNLNFKSNIIYSKVSHGGKDKYIGLKITNINDLKKATPRLKLPAILSSTVIKKNPPVPDEIKEKLYKYCRTCAGLKVPLVDIFSEKGIQMRLSQQIQHLEDIDKHDSLSTQMCMDCICDLKMSYKFFMQIKKAEMKLKSICNSFNDSIFKSIQTNIENQPTEKNEPKSASSSEESTTQYSNDLENKDKSEQRDYTFCEANESCNDENESIEEFDPDNPYDPNENELNKSTESEICNTDILEEHKTAAYRYDESLNAYVKIDSQEGNQISSEQKFKSESNINKVLESVSFGSLNQSSKMPNILKRKLSSGNTSDESTDNTNKINFQKLNIGLKDLKIPKLNLQDTVNIKTEENGVMYVTAKGSKPNEMLLIKVKKMGKLIEKKADKTQSKKKADSCIVHKIFPRYDSHSQKGSYIDEQIEQYKKRRVEVLGQTATISEMNIEEKETEIRVTGKDNSADIEIVDQEEQIEDTEEVKKDESDNISQVLKEMPAIAPQYVSRLEKLKQRWKDIKKRHDAINKDLAEDCTDRLRTILRQKDEYLLDFINYLKQRRIVASRLKDEDIISLYEVKNNVVLERLPTISINDVEENIDPFELKESYQCDFCDQSFPNREMEFEHAKIHDFKLMHYCEDCKNEFPTHKAKRAHSIKCVQKFLCNYCDMILESKGKKRQHEQKHCDEQNGQLCDLCGEKFKHQGTLDQHVKSRHMQLEKIYKCPQCTKRFAFRTKLTFHLKSVHTTSRAFLCEDCGSDFKNPASLRHHRIRKHQSMNNKKECSICHKLVPVYSMSKHMHTHKAYTIECPHCDKMFKNTSTLKQHIRIHEDQRQYKCDMCGVGFNRRDGLRLHLKVHEKTDSRGLKECSCQVCGEKFPNHSMLVIHRNRTHKDGRNYTCHICNRSMISTRSLEWHLSHIHNERMPGIVKDDSSIDAETKRVSCYHCDKTFKTEMILRTHVKNTHVQKEPVKCLDCDLLFTSEVRLKHHMMVMHNRLEGTLACPHCPKRFVNQLRLKTHMISHSDERPHTCELCGFMLKTKIQLIKHKQNRHSNERPLQCKYCSWRCKQVSALVCHERTHTNERPYSCSVCKQKFKYLGDKNKHERRHESLGGSGFKRIVTGRNTNKINRKKEEDSPDQDSDQEQEDYKLEQEVDEEYEDEENIKVEGETFDESQIVKFETGEIIAEESEASFERMYVEDTSQDTNDATQVVMGMEETTVYTEEVTADHIEPEIITNDIIDEHMLQPGTVVHLQQEDETGKIQVIPVMLSLPDLSDATSEVSLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01216982;
90% Identity
iTF_01524206;
80% Identity
-