Basic Information

Insect: Wiebesia pumilae
Gene Symbol: gtf3a
Assembly: GCA_018907045.1
Location: JACCHZ010000055.1:5172536-5177390[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.054 14 7.8 0.3 1 23 675 697 675 697 0.85

2 17 0.94 2.4e+02 3.9 2.1 1 19 703 721 703 724 0.91

3 17 0.5 1.3e+02 4.8 1.1 1 23 729 751 729 751 0.94

4 17 0.001 0.27 13.2 1.6 3 23 760 781 759 781 0.97

5 17 0.0046 1.2 11.2 2.8 1 23 788 811 788 811 0.96

6 17 0.00035 0.09 14.7 1.2 1 23 817 840 817 840 0.94

7 17 5.4 1.4e+03 1.6 1.2 2 23 848 868 847 868 0.87

8 17 1.8e-07 4.7e-05 25.1 1.8 2 23 874 895 873 895 0.97

9 17 8.1e-06 0.0021 19.9 0.2 1 23 901 923 901 923 0.99

10 17 0.00088 0.23 13.5 2.8 2 23 935 957 934 957 0.95

11 17 0.021 5.4 9.1 2.3 1 23 963 986 963 986 0.95

12 17 0.015 3.8 9.6 2.5 2 23 1009 1031 1008 1031 0.93

13 17 0.0029 0.75 11.8 0.6 2 23 1038 1060 1037 1060 0.96

14 17 4.7e-05 0.012 17.5 1.0 3 23 1069 1089 1067 1089 0.96

15 17 0.01 2.6 10.1 2.4 1 23 1095 1118 1095 1118 0.94

16 17 0.31 80 5.4 4.3 2 23 1125 1146 1124 1146 0.96

17 17 0.0045 1.2 11.2 2.8 1 23 1152 1174 1152 1174 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.054	14	7.8	0.3	1	23	675	697	675	697	0.85
2	17	0.94	2.4e+02	3.9	2.1	1	19	703	721	703	724	0.91
3	17	0.5	1.3e+02	4.8	1.1	1	23	729	751	729	751	0.94
4	17	0.001	0.27	13.2	1.6	3	23	760	781	759	781	0.97
5	17	0.0046	1.2	11.2	2.8	1	23	788	811	788	811	0.96
6	17	0.00035	0.09	14.7	1.2	1	23	817	840	817	840	0.94
7	17	5.4	1.4e+03	1.6	1.2	2	23	848	868	847	868	0.87
8	17	1.8e-07	4.7e-05	25.1	1.8	2	23	874	895	873	895	0.97
9	17	8.1e-06	0.0021	19.9	0.2	1	23	901	923	901	923	0.99
10	17	0.00088	0.23	13.5	2.8	2	23	935	957	934	957	0.95
11	17	0.021	5.4	9.1	2.3	1	23	963	986	963	986	0.95
12	17	0.015	3.8	9.6	2.5	2	23	1009	1031	1008	1031	0.93
13	17	0.0029	0.75	11.8	0.6	2	23	1038	1060	1037	1060	0.96
14	17	4.7e-05	0.012	17.5	1.0	3	23	1069	1089	1067	1089	0.96
15	17	0.01	2.6	10.1	2.4	1	23	1095	1118	1095	1118	0.94
16	17	0.31	80	5.4	4.3	2	23	1125	1146	1124	1146	0.96
17	17	0.0045	1.2	11.2	2.8	1	23	1152	1174	1152	1174	0.98

Sequence Information

Coding Sequence: ATGGCATCGAGTTCTAAAGAAATAAGAACAGTCGATATATCCACTAATTCTACTAAAGTTATAAATAAGTTTAATAAAAGTACGGATTTAAAGACTATGAAATCAATCGTAGAAGAATTGAGCGAAGAAAACAATGATAAACAAAATTCATTAGTGGCTACGATAAAAAAAAATAAGAAAGATAACGAAGATCATAACTACAGTGATCCTCATTTAATAAAACCAGATAATATCGAAAATATTACGAATCTTAATGTTAAAAGTAATATTATATACTCCAAAGTGTCTCATGGAGGAAAAGATAAATATATTGGATTAAAAATAACTAATATAAACGATCTTAAAAGAGCGACTCCTCGTCTTAAGTTACCAGCAATATTGTCATCCACAGTTATTAAGAAAACTCCTCCAGTACCTGATGAAATTAAAGAGAAATTATATAAATACTGTCGTACTTGTGCAGGACTAAAAGTCCCTTTGGTTGATATATTTAGTGAAAAAGGAATTCAAATGAGACTAAGTCAACAAATACAACATTTAGAAGACATTAATAAGCATGATAGTTTATCAACTCAAATGTGTATGGATTGTATTTGCGATTTGAAGATGAGCTATAAATTTTTCATGCAAATCAAAAAAGCTGAAATGAAATTAAAATCGATTTGTAACTCATTCAATGATTCTTTATTTAAATCAATTCAAACAAATATTGAAAATCAATCTATTGAAACAAATGACCTAAAACCTGCTTCTTCGAGTGAAGAGTCAATAATAACAAATAATAATGACTCAGAAAATAAAGATAACAAAAATGAATCAAGTAACTATTCCTTTTCTGCTATTAATGACAGCTGTAACGATGAAAATGAGTCAATTGAAGAATTTGATCCTGACAATCCTTGCGATGTAAATGAAAATGAAGCAAATAAAAGTGCAGAATCTGAAATTTGTCATACTGACATCATAGAAGAGCATAAAACTGCTGCGTATAGATATGACGAATCATTAAATGCATATGTTAAGATTGAATCTGACAATGGGAATCAAATAAATAACGAACAGACCACCCAACTTGAAACTAACAATAAAACTGAGTCTGCTAGTTCTGCATCTATAAATCAGTCTGCAAAAGTGCCCAATATACTAAAACGAAAGTTATCTACTGGAAATACAAGCGATGAAAGTAATGATAATATTAATAAAATAAATTTTCAAAAATTGAATATTGGATTAAAAGATTTAAAAATCCCAAAACTAAATCTTCAGGACACCGTGAATATAAAAACTGAAGAAAATGGTGTAATGTATGTTACTGCAAAAGGATCCAAACCAAACGAAATGCTTTTAATAAAGGTAAAGAAAATGGGCAAATTGATGGATAAGAAAGTAGAAAAAACGCAAAGTAAAAAAAAGTCTGATTCATGCATAGTGCACAAGATATTTCCAAGATATGATACTCATAGCCAAAAGGGCAGTTATATTGATGAACAAATAGAGCAGTATAAAAAGAGAAGGGTGGAAGTTTTAGGACAAACTGCTACTATGTCAGAAACGAATGTTGAACAGAAGGAATCCAACATTAGAGCTGTAGGTAAGGATAATTCAGCGGATATAGAAATTCTTGATCAAGAACACGAGCAAATTGAAGAAGCAGAAGTTAGGAAGGAAGATAATATTTCACAAGTGATTAAAGAGATGCCTGCTATTGCACCACAATATGTATCACGTCTGGAAAAGCTGAAGCAACGATGGAAAGATATTAAGAAAAGACACGATGCAATCAATAAAGATCTAGCAGAAGACTGCACTGATAGGTTGAGGACAGTTTTAAGACAGAAGGATGAATATTTATTAGACTTTGTTAATTATTTGAAACAGCGAAGAATCGTAGCATCTCGTTTAAAAGATGAAGACATTATATCGCTGTATGAAGTTAAAAATAACGTGGTTTTAGAAAGATTGCCCATGATAACGGTTAACGATGCAGAAGAAAATACCGATCCTTTTGAATTTAAGGAGTGTTACGAGTGTGACTTTTGCGACCAATCTTTTCCAAATAGAGAAATGGAATTTGAACACGCGAAAATTCATGATTTCAAGTTAATGCATTACTGCGAAGATTGCAAAAATGAATTTACGACGCATAAGGCAAAACGTGCACATAGCATTAAGTGCGTACAAAAGTTTTTGTGCAACTATTGTGATATGATTTTAGAATCTAAAGGGAAGAAACGACAGCATGAACAAAAACATTGTGACGAACAGAATGGTCAGCTTTGCGATTTATGTGGTGAAAAGTTCAAGCATCAGGGGACCTTGGATCAACACGTAAAGTCCCGACACATGCAATTGGAAAAGATTTACAAGTGCCCGCAGTGTACAAAAAGATTTGCATTCAGGACAAAATTAACCTTTCACTTAAAATCCGTGCATACTACTAGTCGAGCTTTTCTATGCGAGGATTGTGGATCCGATTTTAAAAATCCTGCAAGCCTAAGACATCATAGAATCCGAAAGCACCAGTCGGTGAATAATAAAAAAGAGTGTTCTATTTGTAATAAGCTGGTTCCGGTTTACAGTATGTCAAAACATATGCATACCCATAAGGCATATACCATTGAATGTCCTCACTGCGATAAAATGTTCAAAAATACTTCGACTTTGAAGCAGCATATAAGAATTCACGAAGATCAACGGCAATACAAATGTGACATGTGTGGTGTTGGATTCAACAGGCGAGATGGTTTGAGATTGCATTTGAAAGTTCACGAGAAGACCGACAGCAGGGGCCTGAAGGAATGTTCGTGTCAGGTTTGCGGTGAGAAGTTTCCGAATCACTCGATGCTTGTGATTCACAGAAACCGCACTCACAAGGATGGCAGAAATTACACTTGTCACATATGCAACCGATCCATGATATCTACACGATCGCTGGAGTGGCACTTGTCACACATACACAACGAAAGGATGCCGGGCATTGTGAAAGACGCCGATTCGAGCATAGACGCCGAAACCAAGCGAGTTTCTTGTTATCATTGTGATAAGACCTTCAAGACCGAGATGATCCTGCGAACACATGTGAAAAATACACATGTACAAAAGGAGCCCGTGAAGTGCTTAGACTGCGATTTATTGTTTACATCGGAGGTGCGCTTGAAGCACCACATGATGGTAATACACAATCGCTTAGAAGGAACTTTAGCTTGTCCACATTGTCCTAAAAGATTTGTTAATCAGTTGAGATTAAAAACTCATATGATTTCTCATTCGGATGAGAGGCCACATAGTTGTGACCTTTGTGGCTTCATGTTAAAGACGAAAATACAACTGATTAAGCATAAGCAGAACAGACACAGTAACGAAAGACCTCTCCAATGCAAATATTGTTCGTGGAGATGTAAGCAAGTCAGTGCACTGGTTTGCCACGAAAGGACCCACACAAATGAAAGGCCTTATAGTTGCAGCGTATGTAAACAGAAATTCAAATATTTGGGTGATAAGAATAAGCACGAAAGACGACACGAGAGCCTCGGTGGTTCTGGATTTAAGAGGATCGTCACTGGAAGAAATACTAATAAAATTAACAGAAAAAAAGAAGAAGATTCACCTGATCAGGATTCCGATCTAGAGCAGGATGAGTATGAAATGGATCAGGAAGGGGATGAAGAGTACGAAGATCAGGAAGAGAATATTAAAATAGAAGAAGAAAACTTTGATGAGTCGCAAATTGTAAAGTTTGATACTGGAGAGATCATAACTGAAGAATCAGAAGGATCTTTTCAACAGATGTATGTTGAAGATACGTCACAAGATACTAATGATGCAACTGAAGTTGTAATGGGGATGGAAGAAACAACAGTTTATACAGAGGAAGTTACAGCTGATCATATCGAACCTGAAATAATCACTAATGATATTATAGATGAACATATGTTGCAACCAGGTACGGTTGTTCACCTTCAACAAGAGGATGAAACTGGCAAGATTCAAGTGATACCAGTTATGCTGTCTTTGCCAGATTTATCAGATGCCACATCTGAAGTTAGTTTAGCGACAGCTTCTATAATGTACAATAATTAA
Protein Sequence: MASSSKEIRTVDISTNSTKVINKFNKSTDLKTMKSIVEELSEENNDKQNSLVATIKKNKKDNEDHNYSDPHLIKPDNIENITNLNVKSNIIYSKVSHGGKDKYIGLKITNINDLKRATPRLKLPAILSSTVIKKTPPVPDEIKEKLYKYCRTCAGLKVPLVDIFSEKGIQMRLSQQIQHLEDINKHDSLSTQMCMDCICDLKMSYKFFMQIKKAEMKLKSICNSFNDSLFKSIQTNIENQSIETNDLKPASSSEESIITNNNDSENKDNKNESSNYSFSAINDSCNDENESIEEFDPDNPCDVNENEANKSAESEICHTDIIEEHKTAAYRYDESLNAYVKIESDNGNQINNEQTTQLETNNKTESASSASINQSAKVPNILKRKLSTGNTSDESNDNINKINFQKLNIGLKDLKIPKLNLQDTVNIKTEENGVMYVTAKGSKPNEMLLIKVKKMGKLMDKKVEKTQSKKKSDSCIVHKIFPRYDTHSQKGSYIDEQIEQYKKRRVEVLGQTATMSETNVEQKESNIRAVGKDNSADIEILDQEHEQIEEAEVRKEDNISQVIKEMPAIAPQYVSRLEKLKQRWKDIKKRHDAINKDLAEDCTDRLRTVLRQKDEYLLDFVNYLKQRRIVASRLKDEDIISLYEVKNNVVLERLPMITVNDAEENTDPFEFKECYECDFCDQSFPNREMEFEHAKIHDFKLMHYCEDCKNEFTTHKAKRAHSIKCVQKFLCNYCDMILESKGKKRQHEQKHCDEQNGQLCDLCGEKFKHQGTLDQHVKSRHMQLEKIYKCPQCTKRFAFRTKLTFHLKSVHTTSRAFLCEDCGSDFKNPASLRHHRIRKHQSVNNKKECSICNKLVPVYSMSKHMHTHKAYTIECPHCDKMFKNTSTLKQHIRIHEDQRQYKCDMCGVGFNRRDGLRLHLKVHEKTDSRGLKECSCQVCGEKFPNHSMLVIHRNRTHKDGRNYTCHICNRSMISTRSLEWHLSHIHNERMPGIVKDADSSIDAETKRVSCYHCDKTFKTEMILRTHVKNTHVQKEPVKCLDCDLLFTSEVRLKHHMMVIHNRLEGTLACPHCPKRFVNQLRLKTHMISHSDERPHSCDLCGFMLKTKIQLIKHKQNRHSNERPLQCKYCSWRCKQVSALVCHERTHTNERPYSCSVCKQKFKYLGDKNKHERRHESLGGSGFKRIVTGRNTNKINRKKEEDSPDQDSDLEQDEYEMDQEGDEEYEDQEENIKIEEENFDESQIVKFDTGEIITEESEGSFQQMYVEDTSQDTNDATEVVMGMEETTVYTEEVTADHIEPEIITNDIIDEHMLQPGTVVHLQQEDETGKIQVIPVMLSLPDLSDATSEVSLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01216982;
90% Identity: iTF_01219255;
80% Identity: -