Ekon029289.1
Basic Information
- Insect
- Eupristina koningsbergeri
- Gene Symbol
- -
- Assembly
- GCA_018907245.1
- Location
- JACCHV010002768.1:1319187-1324229[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.023 8.6 8.8 0.6 1 23 709 731 709 731 0.85 2 17 7.6 2.8e+03 0.9 0.9 1 11 737 747 737 757 0.75 3 17 2.5 9.2e+02 2.4 1.6 1 23 763 785 763 785 0.94 4 17 0.0082 3.1 10.2 1.1 3 23 794 815 793 815 0.97 5 17 0.0042 1.6 11.2 2.8 1 23 822 845 822 845 0.96 6 17 0.00032 0.12 14.7 1.2 1 23 851 874 851 874 0.94 7 17 3.5 1.3e+03 2.0 1.3 2 23 882 902 881 902 0.88 8 17 1.6e-07 6.1e-05 25.0 1.8 2 23 908 929 907 929 0.97 9 17 7.3e-06 0.0027 19.8 0.2 1 23 935 957 935 957 0.99 10 17 0.00079 0.3 13.4 2.8 2 23 969 991 968 991 0.95 11 17 0.019 7 9.1 2.3 1 23 997 1020 997 1020 0.95 12 17 0.021 7.8 9.0 2.4 3 23 1043 1064 1042 1064 0.94 13 17 0.00027 0.1 14.9 0.6 2 23 1071 1093 1070 1093 0.96 14 17 4.2e-05 0.016 17.4 1.0 3 23 1102 1122 1100 1122 0.96 15 17 0.0062 2.3 10.6 2.5 1 23 1128 1151 1128 1151 0.95 16 17 0.28 1.1e+02 5.4 4.3 2 23 1158 1179 1157 1179 0.96 17 17 0.004 1.5 11.2 2.8 1 23 1185 1207 1185 1207 0.98
Sequence Information
- Coding Sequence
- ATGGCTTCGAGTTCTAAGGAAACAAAAGGATTCGATACTCCGACTAATTCTTACAAGATTATAAATAAAGTTAATAAAAGCGTCGATTTAAAGGCTATAAAGTCCATTATAGATGACTTGAGTGACGAAACTACTGATAAGCAATATTTTGAACCAGTTGCAAAAAAAATTAAATCATCAGATAATAAAGATCATAATTACAGTGATCCTCAATTAATAAAAACAGAAAATGATGAAAATATTACAAATTTTAAAAGTAATATTATATATTCCAAAGTATCTCATGGAGGAAAAGAGAAATACATTGGGTTAAAGATAACAAATTTAAATGATCTTAAAAAAGCAACTCCTCGTCTTAAGTTACCTGCAATATTGTCATCAACAACTATTAAGAAGACTCCCCCAGTACCTGAAGAAATTAAACAGAAATTGTATAAATATTGTCGTACTTGCGCAGGACTAAAAGTTCCACTAGTTGATATATTTAGTGAAAAAGGAATTCAAATGAGACTTAGTCAACAAATACAACATCTAGAAGACATTAATAAGCACGATAGTTTATCAACTCAAATGTGTATGGATTGTATTTGTGATTTAAAGATGAGTTATAAATTTTTCATGCAAATCAAAAAAGCTGAAATGAAATTGAAATCAATTTGCAATTCTTTCAATGACTCTGTAATTAAGCCAATTCAAACAAATACTGAAAATCATTTTATAGAAAAAAATGATTTAAAAACTGCTTCTTCAGTTGAAGACATAGTATCTACAGTTGAATCAGCAGCTTCTGCAGTAGAATCAGTGGTTTCTGTAGTTGAATCAGCAAATTCTGCAGTTGAATCAATGACTAAAGATAATGATGAGTTGGAAAAGAATGAAGAAATAAAAAATGAAATAAATGACTATTCTTTTGAAATTACTGAAAGTTGTAATGATGAAAATGAATCTATTGAAGAATTTGATCCTGATAATCCTTTTGATTCAAACGAAATTGAAACAAATAAAAGTACAGATTTTGAGAACTTTAATCCTGATACAGATGATAAAATGCCTTCTTACAGATATGATGAAGAATTAAATGCATATATTAAGATTGAGACTATTGATGAAGATCCAGTAATTGATGAATCGAAAGAAGATACTATAATGGAAACTAGTAATAATGAAGAAACTAATTCAGCTAGTACTCCAACAAATCAAGCTCAGATAAGCATACCCAATATATTAAAAAGAAAATTATCTGCTGGTGAAAATACAAGTGATGAAGGTTCTGAAAATATAAATAAATTAAATTTTCCAAAATTAAATATTGATTTAAAAGAATTAAAAATACCAAAATTAAATCTACAAGACACTGTGAATATAAAAACAGAAGAAAACGGTGTAATGTATGTTACTGCAAAGGGATCAAAACCAAATGAAATGCTTTTAATAAAGGTAAAAAAAATGGATAAATCATTAGAAAAGAAAGCAGAAAAAAAGGCTGAAAAAGAAAGTAAAAAAAAGTTGGCTGAGTCATCAACAGTGCATAAGATATATCCAAGATATGATATGCATAGTCTAAAGAGTAGTGTTATTGAAAAAAAAATTGAGGAATATCAAAAGAGGAGGGTGGAGGTTTTAGGACCTACATGTTCGATGTCAAATTTTTTAAACCCGCCAGTTAAAGAACCTGATAAAGTTATAATAAAGGATAATGCAGCTGATATAGAAATTTTCGATCAAGAAGAACAAGAGCAAATTGAAGAAACAGAAGAATTTAAAAGCGAAGGAGATATTTCACAAGTGCTTAAAGAAATGCCTGCTATAGCACCACAGTATGCATCGCGTTTAGAAAAATTAAAACAACGATGGAAAGATATTAAGAAAAGACATGATGCAATCAGTAAAGATCTGGCAGAAGATTGTACTGATAGGCTGAGAGCAATTTTAAGACAAAAAGATGAATATTTATTAGATTTTATTAATTATTTAAAACAACGAAGAATTGTAGCATCACGTTTAAAAGATGAAGACATCATTTCATTGTATGAAGTGAAAAATAATGTAATTTTAGAAAGATTACCAACAATAACAGTCACTGAAGTTGATGAAAGTATTGATCCTTTTGAATACAAGGAGAGTTACGAATGTGACTTTTGCGATCAATCTTTTTCAAGTAGAGAAATGGAGTTTGAACATGCAAAAATTCATGATTTCAAATTAATGCATTATTGTGATGATTGTAAAACTGAATTTCTTACACATAAAGCAAAACGTGCTCATAGCATTAAGTGTGTACAAAAATTCTTATGCAAATATTGCAGTATGATTTTAGAATCAAAAGGTAAGAAGCGACAGCATGAACAAAAACATTGTGATCAACAGTATGGTCAGCTATGCGATTTGTGTGGTGAAAAGTTTAAGCACATAGGAACTTTGGATCAACATGTAAAGTCACGTCATATGCAATTGGAGAAGATATACAAATGTCCACAATGTACAAAAAGATTTGCATTCAGGACAAAACTAACATTTCATTTAAAATCTGTGCATACCACTTGTAGAGCATTTTTGTGTGAGGATTGTGGCTCTGATTTTAAAAATCCTGCTAGCTTGAGACATCATAGAATTCGTAAGCACCAATCGATAAATAATAAAAAAGAATGTAACATCTGCAATAAGCTTGTTCCAGTTTATAGTATGTCAAAACATATGCATACACACAAAGCATATACCATTGAATGCCCTCACTGCGATAAAATGTTCAAGAATACTTCAACTTTAAAACAGCATATAAGAATTCACGAGGATCAAAGACAATATAAATGTGACATGTGTGGCGTTGGATTTAATCGACGAGATGGTTTGAGATTGCATTTGAAAGTTCACGAGAAAACTGACAGTAGAGGACTGAAGGAATGCTCATGTCAAGTTTGTGGTGAAAAGTTCCCAAATCACTCAATGCTTGTGATTCATAGGAACCGCACTCATAAGGATGGTAGAAATTACACTTGCCACATATGCAACAGATCAATGATTTCTACTCGATCACTGGAATGGCATTTGTCGCATATACATAATGAAAGAATGCCGGGCATTGTAAAAGATGATTCAAGTATAGATTCCGAAACAAAGAGAGTTGCTTGTTATCATTGCGATAAAACATTTAAAACCGAAATGATATTACGAACACATGTAAAAAATACACATGTACAAAAAGAGCCTGTAAAATGCTTGGACTGCGATTTAATGTTTACGTCGGAGGTACGTTTAAAGCACCACATGATGGTTGTACATAATCGATTAGAAGGAACCTTGGCTTGTCCACATTGTCCTAAACGATTTGTTAACCAACTAAGGTTGAAAACACATATGATTTCACATTCGGATGAAAGACCACATACCTGCGAACTTTGTGGATTCATGTTAAAGACGAAAATACAGCTTATTAAGCATAAACAAAATAGACATAGCAATGAAAGACCGCTTCAATGCAAATACTGTTCATGGAGATGTAAGCAAGTCAGTGCATTAGTTTGTCACGAAAGAACTCATACAAATGAAAGACCATATAGCTGCAGTGTTTGTAAGCAGAAATTCAAATATTTGGGAGATAAGAATAAGCATGAAAGACGACATGAGAGCTTGGGGGGTTCCGGATTTAAAAGAATTGTTACTGGAAGAAATACTAACAAACTTAGAAAAAAAGAACAAGATTCAATAGAACAAGATTCTGATCAAGATCAGGATGAATATGAAATGGAACAGGAAGGAGATGAAGATTATGAAGATCAGGATGATAACATTAAAGAAGAGACTGAAGAGACTTATGATGAGTCACAAATTGTAAAATTCGAAGATGGAGAAATTATAAATGAAGAATCACAGGCATCTTTTGAAAGGATGTATGTTGAAGATACATCACAAGATACAAATGAAGCAACTGAAGTTGTAATGGGTATAGAAGAAACAGCAGTTTATACAGAAGAAGTAGTTACAGCAGATCATATTGAACCTGAAATAATTACTAATGAAATTATTGATGAATCTATGTTACAACCAGGAACTGTTGTTCATTTGCAACAAGAAGATGAAACTGGTAAGATTCAAGTGATACCAGTAATGCTGTCATTGCCAGACTTATCGGATGCTACATCTGAAGTTAATTTAGCAACAGCTTCTATAATGTACAATAATTAA
- Protein Sequence
- MASSSKETKGFDTPTNSYKIINKVNKSVDLKAIKSIIDDLSDETTDKQYFEPVAKKIKSSDNKDHNYSDPQLIKTENDENITNFKSNIIYSKVSHGGKEKYIGLKITNLNDLKKATPRLKLPAILSSTTIKKTPPVPEEIKQKLYKYCRTCAGLKVPLVDIFSEKGIQMRLSQQIQHLEDINKHDSLSTQMCMDCICDLKMSYKFFMQIKKAEMKLKSICNSFNDSVIKPIQTNTENHFIEKNDLKTASSVEDIVSTVESAASAVESVVSVVESANSAVESMTKDNDELEKNEEIKNEINDYSFEITESCNDENESIEEFDPDNPFDSNEIETNKSTDFENFNPDTDDKMPSYRYDEELNAYIKIETIDEDPVIDESKEDTIMETSNNEETNSASTPTNQAQISIPNILKRKLSAGENTSDEGSENINKLNFPKLNIDLKELKIPKLNLQDTVNIKTEENGVMYVTAKGSKPNEMLLIKVKKMDKSLEKKAEKKAEKESKKKLAESSTVHKIYPRYDMHSLKSSVIEKKIEEYQKRRVEVLGPTCSMSNFLNPPVKEPDKVIIKDNAADIEIFDQEEQEQIEETEEFKSEGDISQVLKEMPAIAPQYASRLEKLKQRWKDIKKRHDAISKDLAEDCTDRLRAILRQKDEYLLDFINYLKQRRIVASRLKDEDIISLYEVKNNVILERLPTITVTEVDESIDPFEYKESYECDFCDQSFSSREMEFEHAKIHDFKLMHYCDDCKTEFLTHKAKRAHSIKCVQKFLCKYCSMILESKGKKRQHEQKHCDQQYGQLCDLCGEKFKHIGTLDQHVKSRHMQLEKIYKCPQCTKRFAFRTKLTFHLKSVHTTCRAFLCEDCGSDFKNPASLRHHRIRKHQSINNKKECNICNKLVPVYSMSKHMHTHKAYTIECPHCDKMFKNTSTLKQHIRIHEDQRQYKCDMCGVGFNRRDGLRLHLKVHEKTDSRGLKECSCQVCGEKFPNHSMLVIHRNRTHKDGRNYTCHICNRSMISTRSLEWHLSHIHNERMPGIVKDDSSIDSETKRVACYHCDKTFKTEMILRTHVKNTHVQKEPVKCLDCDLMFTSEVRLKHHMMVVHNRLEGTLACPHCPKRFVNQLRLKTHMISHSDERPHTCELCGFMLKTKIQLIKHKQNRHSNERPLQCKYCSWRCKQVSALVCHERTHTNERPYSCSVCKQKFKYLGDKNKHERRHESLGGSGFKRIVTGRNTNKLRKKEQDSIEQDSDQDQDEYEMEQEGDEDYEDQDDNIKEETEETYDESQIVKFEDGEIINEESQASFERMYVEDTSQDTNEATEVVMGIEETAVYTEEVVTADHIEPEIITNEIIDESMLQPGTVVHLQQEDETGKIQVIPVMLSLPDLSDATSEVNLATASIMYNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01216982;
- 90% Identity
- -
- 80% Identity
- -