Csol002127.1
Basic Information
- Insect
- Ceratosolen solmsi
- Gene Symbol
- -
- Assembly
- GCA_000503995.1
- Location
- NW:3658824-3665770[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.035 2.1 8.1 0.5 1 22 682 703 682 704 0.79 2 17 6.5 3.9e+02 0.9 2.4 1 19 710 728 710 731 0.87 3 17 0.25 15 5.4 1.0 1 23 736 758 736 758 0.94 4 17 0.00079 0.048 13.2 1.6 3 23 767 788 766 788 0.97 5 17 0.0035 0.21 11.2 2.8 1 23 795 818 795 818 0.96 6 17 0.00027 0.016 14.7 1.2 1 23 824 847 824 847 0.94 7 17 8.7 5.3e+02 0.5 3.0 2 23 855 875 854 875 0.89 8 17 1.4e-07 8.4e-06 25.1 1.8 2 23 881 902 880 902 0.97 9 17 9.4e-06 0.00056 19.3 0.2 1 23 908 930 908 930 0.99 10 17 0.00067 0.04 13.5 2.8 2 23 942 964 941 964 0.95 11 17 0.016 0.96 9.1 2.3 1 23 970 993 970 993 0.95 12 17 0.011 0.69 9.6 2.5 2 23 1015 1037 1014 1037 0.93 13 17 0.00032 0.019 14.5 1.0 2 23 1044 1066 1043 1066 0.96 14 17 3.6e-05 0.0022 17.5 1.0 3 23 1075 1095 1073 1095 0.96 15 17 0.0078 0.47 10.1 2.4 1 23 1101 1124 1101 1124 0.94 16 17 0.24 14 5.4 4.3 2 23 1131 1152 1130 1152 0.96 17 17 0.0034 0.21 11.2 2.8 1 23 1158 1180 1158 1180 0.98
Sequence Information
- Coding Sequence
- ATGGCATCGAGTTTTAAGGATTCAAGAATAGTTGATACATCAACTAATTGTATAAATCTaactaataaacttaataagaaTTCTGATTTAAAAACTATGAAGTCCATTATTGATGAATCTTACGAAGGAAATTAtgATACACATATTTCATCAATggaaattttgaaacaaattaaattattagataatgtaGATCATAATTATAGTGATCCATTGTTAGCAAAAACTGAGAGCCTTGAAAACATTGCTAATATTAGttctaaaagtaatattatatattcaaaagtaaCTCATGGaggaaaagataaatatatcggattaaaaataacaaatataaatgatcttAAAAAAGCAACTCCTCGTCTTAAGTTACCAGCAATATTGTCATCGACAGCTGTTAAAAAAAGTCCTCCAGTACCTGccgaaattaaagaaaaattgtacaaatattgtCGTACTTGCGCGGGACTGAAAGTTCCGTTAGTTGATATATTTAGTGAAAAAGGAATTCAAATGAGACTTAGTCAACAAATACAGCACTTAGAAGACATCGATAAAGATGATAGCTTATCGACTCAAATGTGTATGGACTGTATTTGCGATTTGAAAatgagttataaattttttatgcaaataaagaaagctgaaatgaaattaaaatcaatttgtaaCTCATTCAatgattctatatttaaatcaattcaaataaatacagaCAATGATTCTATAGAAACAATTGATTCAAAACCTATTGTTTTAAGCGATGAATCAATAACAAAAGTGGATAATGATGTAGAatgtaaagatattaaaaatgaactaGGAGATTATTCTTTTAgtagaaataatgaaagcaTTAACGATGAAAACGAATCTATTGAAGAATTTGATCCTGATAATCCTTATGAtccaaatgaaaatgaaacgaTTAAAAGTATAGATTCTGAAATTTGTAGTGCTGATATCATGGATGAGAACAAAACGACTGCCTATAGATACGATGAATCATTAAATGCCTATGTTAAGATTGATAATGTTGATAAAGAtgaagtaataataagtaatgaagaaaaagttaaaccagaatataataatgttaaaacagAGCCTATTATTTCGGGATCTTCAAATCAACATCCAAAAATGCCcaacatattaaaaagaaaatctgtTGGAAATACAAGTGATGAAAGTATcgataatattagtaaaataaattttcaaaaattaaatattggtttaaaggatttaaaaattccaagATTAAATCTTCAAGATACTGTGAACATAAAGACAGAAGAAAATGGTATTATGTACGTTACAGCTAAAGGCTCAAAACCTAATGAGATGctcttaataaaagtaaaaaggaTGAGTAAattagtagaaaaaaaaagtgacaAAACTCAAAGTAAAAGGAAATCAGATTCAAGTATTGTGCACAAGATATTTCCTAAATATGATAGCCATAGTGAAAAGGGTAATTATATTGATGAGCAAATAGAGCAGTACAAAAAGAGAAGGGTTGAAGTTTTAGGACAAACTGCTAATGTTtcagaaataaatgttatggAAAAGGAATCAGATATTAGAATTCCAACTAACAATAATGCAGCTGATCTAGAAATTGTTGATTCAGAAGAGCAGGGACAAATTGATGAAGTAGAAGAAATTAAGAAGGAtgacattgataatatttcacaaGTGCTTAAAGAGATGCCAGCTATTGCTCCGCAATATGCATCACGCTTGGAAAAATTGAAGCAACGAtggaaagatattaaaaaacgaCATGATGCAATCAATAAAGATTTAGCAGAAGATTGCACCGATAGGTTGAGGACAATTTTAAGGCAGAAAGATgagtatttattagattttattaattatttaaaacagcgTAAAATCGTGGCATCGCGTTTAAAAGATGAagacattatttcattatatgaagtaaaaaataatgtaattttggaAAGATTACCATTAATTACTACTACTGATGTAGAAGATAACGTCGACCcttttgaattaaaagaagACTACCAATGTGACTTTTGCGACCAGTCTTTTCCAAATAGAGAAATGGAATATGAACACGCGAAAATTCACgactttaaattaatgcattactGTGaagattgtaaaaatgaattttttacacaTAAGGCAAAGCGtgctcataatattaaatgtgtacaaaaatttttgtgCAATTATTGTGATATGATTTTAGTATCAAAAGGTAAAAAACGCCAGCACGAGCAGAAGCACTGTGATGAAATGAACGGCCAACTTTGCGATTTGTGCGGGGAAAAATTTAAGCACCAAGGGACTTTAGATCAACATGTAAAGTCTCGACATATGCAGCTTGAAAAGATTTACAAATGTCCGCAGTGTACAAAGAGATTTGCTTTTAGGACAAAGTTAACCTTTCACTTAAAATCCGTACACACAACTAGCCGAGCTTTTCTATGCGAGGATTGTGGATCTGATTTTAAAAATCCCGCTAGTTTGAGGCATCATAGAATTCGAAAACATCaatcagtaaataataaaaaagagtgTAACATCTGTCATAAATTGGTTCCAGTTTATAGCATGTCAAAACATATGCACACGCATAAAGCGTATACTATTGAATGTCCTCATTGCGATAAAATGTTCAAGAATACGTCGACCCTGAAGCAACACATAAGAATCCACGAGGATCAGCGACAATATAAATGTGACCTGTGCGGCGTTGGATTTAATAGACGCGACGGCCTGAGATTGCATTTGAAAGTTCACGAGAAAACCGACAGCAGGGGACTAAAGGAATGCTCGTGTCAGGTTTGCGGTGAGAAGTTTCCAAATCACTCGATGCTTGTGATTCATAGGAACCGCACTCATAAGGACGGTAGGAACTACACTTGTCACATATGCAACAGGTCCATGATCTCTACTCGATCGTTGGAATGGCACTTGTCGCATATACATAACGAAAGAATGCCGGGTATCGTGAAGGATGATTCAAGCATCGACGCCGAGACTAAGCGAGTCTCTTGCTACCATTGCGACAAGACATTTAAGACCGAAATGATACTGCGAACTCACGTGAAAAATACTCATGTACAGAAGGAGCCCGTGAAATGTCTGGATTGCGACTTAATGTTTACGTCTGAGGTGCGTTTGAAGCACCACATGATGATAACACACAATCGTTTGGAGGGTACCTTGGCTTGCCCACATTGTCCTAAACGATTTGTCAATCAGTTAAGATTGAAAACACATATGATTTCTCATTCTGATGAGAGACCGCACAGTTGTGACCTTTGCGGTTTTATGTTGAAGACAAAGATACAGCTGATTAAGCACAAGCAAAATAGACATAGTAATGAAAGACCGCTTCAATGCAAATATTGCTCGTGGAGATGTAAGCAAGTCAGTGCGTTGGTTTGCCACGAAAGAACTCACACGAATGAGAGGCCTTACAGTTGCAGTGTCTGCAAACAGAAATTCAAATACTTGGGTGATAAGAATAAGCATGAAAGACGACACGAGAGTCTGGGTGGTTCTGGATTTAAAAGAATCGTTACTGGAAGGAataccaataaaattaatcgaaagaaAGAGGAAGATTCACCGGACCAGGATTCTGAACAAGAGCAGGATGATTATGAAATAGATCAGGATGGAGACGATGATTATGAAGATCAGGATgagagtataaaaattaatagaggaGACTACGACGAAtcacaaattgtaaaattcgaGACTGGAGAAATTATAGCCGAAGAATCCGAAGCATCTTTTGAAAGGatgtaTGTTGAAGACACATCACAAGATACAAATGATGCGACCGAGGTTGTAATGGGTATGGAAGAAACAACAGTTTATACCGAAGAAGTTACAGCTGATCATATTGAACCTGAAATAATTACTAGTGATATTATTGATGAATCTATGTTGCAGCCAGGAACTGTTGTTCATCTTCAACAAGAAGATGAAACAGGAAAAATTCAAGTGATACCAGTCATGTTGTCTTTGCCTGATTTATCAGATGCTGCATCTGAAGTTAGTTTAGCAACAGCTtctataatgtacaataattaa
- Protein Sequence
- MASSFKDSRIVDTSTNCINLTNKLNKNSDLKTMKSIIDESYEGNYDTHISSMEILKQIKLLDNVDHNYSDPLLAKTESLENIANISSKSNIIYSKVTHGGKDKYIGLKITNINDLKKATPRLKLPAILSSTAVKKSPPVPAEIKEKLYKYCRTCAGLKVPLVDIFSEKGIQMRLSQQIQHLEDIDKDDSLSTQMCMDCICDLKMSYKFFMQIKKAEMKLKSICNSFNDSIFKSIQINTDNDSIETIDSKPIVLSDESITKVDNDVECKDIKNELGDYSFSRNNESINDENESIEEFDPDNPYDPNENETIKSIDSEICSADIMDENKTTAYRYDESLNAYVKIDNVDKDEVIISNEEKVKPEYNNVKTEPIISGSSNQHPKMPNILKRKSVGNTSDESIDNISKINFQKLNIGLKDLKIPRLNLQDTVNIKTEENGIMYVTAKGSKPNEMLLIKVKRMSKLVEKKSDKTQSKRKSDSSIVHKIFPKYDSHSEKGNYIDEQIEQYKKRRVEVLGQTANVSEINVMEKESDIRIPTNNNAADLEIVDSEEQGQIDEVEEIKKDDIDNISQVLKEMPAIAPQYASRLEKLKQRWKDIKKRHDAINKDLAEDCTDRLRTILRQKDEYLLDFINYLKQRKIVASRLKDEDIISLYEVKNNVILERLPLITTTDVEDNVDPFELKEDYQCDFCDQSFPNREMEYEHAKIHDFKLMHYCEDCKNEFFTHKAKRAHNIKCVQKFLCNYCDMILVSKGKKRQHEQKHCDEMNGQLCDLCGEKFKHQGTLDQHVKSRHMQLEKIYKCPQCTKRFAFRTKLTFHLKSVHTTSRAFLCEDCGSDFKNPASLRHHRIRKHQSVNNKKECNICHKLVPVYSMSKHMHTHKAYTIECPHCDKMFKNTSTLKQHIRIHEDQRQYKCDLCGVGFNRRDGLRLHLKVHEKTDSRGLKECSCQVCGEKFPNHSMLVIHRNRTHKDGRNYTCHICNRSMISTRSLEWHLSHIHNERMPGIVKDDSSIDAETKRVSCYHCDKTFKTEMILRTHVKNTHVQKEPVKCLDCDLMFTSEVRLKHHMMITHNRLEGTLACPHCPKRFVNQLRLKTHMISHSDERPHSCDLCGFMLKTKIQLIKHKQNRHSNERPLQCKYCSWRCKQVSALVCHERTHTNERPYSCSVCKQKFKYLGDKNKHERRHESLGGSGFKRIVTGRNTNKINRKKEEDSPDQDSEQEQDDYEIDQDGDDDYEDQDESIKINRGDYDESQIVKFETGEIIAEESEASFERMYVEDTSQDTNDATEVVMGMEETTVYTEEVTADHIEPEIITSDIIDESMLQPGTVVHLQQEDETGKIQVIPVMLSLPDLSDAASEVSLATASIMYNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01216982;
- 90% Identity
- -
- 80% Identity
- -