Basic Information

Insect: Pieris rapae
Gene Symbol: -
Assembly: GCA_905147795.1
Location: LR990592.1:6968989-6983435[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 31 0.23 18 6.2 3.7 1 21 194 214 194 216 0.91

2 31 0.00037 0.029 15.0 0.3 2 20 255 273 254 275 0.93

3 31 0.00024 0.019 15.6 0.2 2 23 301 323 300 323 0.95

4 31 5.8 4.5e+02 1.8 0.7 2 15 343 356 342 363 0.79

5 31 0.0014 0.11 13.2 0.8 1 23 373 395 373 395 0.97

6 31 0.013 0.99 10.2 0.4 1 23 413 435 413 435 0.96

7 31 7.4e-05 0.0057 17.2 1.5 1 23 474 497 474 497 0.97

8 31 0.00013 0.01 16.4 2.0 2 23 539 561 539 561 0.97

9 31 0.0092 0.71 10.6 0.5 1 23 611 635 611 635 0.97

10 31 0.00065 0.051 14.2 0.3 1 23 690 712 690 712 0.98

11 31 0.031 2.4 9.0 5.7 2 23 724 745 723 745 0.96

12 31 0.008 0.62 10.8 1.0 2 23 757 778 756 778 0.96

13 31 0.00062 0.048 14.3 0.6 1 23 788 810 788 810 0.98

14 31 0.11 8.5 7.2 5.3 1 23 839 861 839 861 0.96

15 31 0.00091 0.07 13.8 3.5 1 23 872 894 872 894 0.97

16 31 7.3e-05 0.0057 17.2 1.1 1 23 902 924 902 924 0.98

17 31 0.00065 0.05 14.2 0.2 2 23 944 966 943 966 0.97

18 31 0.33 26 5.7 1.2 1 23 984 1006 984 1006 0.96

19 31 0.25 20 6.1 3.6 1 23 1013 1035 1013 1035 0.96

20 31 0.00037 0.028 15.0 4.4 2 23 1046 1068 1045 1068 0.95

21 31 0.00088 0.068 13.8 0.2 2 23 1091 1112 1090 1112 0.95

22 31 8.3 6.4e+02 1.3 0.3 2 20 1116 1134 1115 1135 0.82

23 31 3.6 2.8e+02 2.5 3.1 2 23 1155 1177 1154 1177 0.93

24 31 0.00099 0.077 13.7 0.4 2 23 1193 1214 1192 1214 0.95

25 31 0.085 6.6 7.6 5.0 3 23 1222 1242 1220 1242 0.96

26 31 0.0018 0.14 12.8 1.8 2 23 1253 1275 1252 1275 0.95

27 31 1.2 92 4.0 4.0 3 23 1293 1310 1292 1310 0.91

28 31 0.19 15 6.5 3.6 2 21 1314 1333 1314 1334 0.94

29 31 0.0032 0.25 12.0 0.4 2 23 1414 1436 1413 1436 0.96

30 31 9.1 7e+02 1.2 0.8 2 23 1452 1470 1451 1470 0.68

31 31 0.037 2.9 8.7 3.1 2 21 1474 1493 1473 1494 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	31	0.23	18	6.2	3.7	1	21	194	214	194	216	0.91
2	31	0.00037	0.029	15.0	0.3	2	20	255	273	254	275	0.93
3	31	0.00024	0.019	15.6	0.2	2	23	301	323	300	323	0.95
4	31	5.8	4.5e+02	1.8	0.7	2	15	343	356	342	363	0.79
5	31	0.0014	0.11	13.2	0.8	1	23	373	395	373	395	0.97
6	31	0.013	0.99	10.2	0.4	1	23	413	435	413	435	0.96
7	31	7.4e-05	0.0057	17.2	1.5	1	23	474	497	474	497	0.97
8	31	0.00013	0.01	16.4	2.0	2	23	539	561	539	561	0.97
9	31	0.0092	0.71	10.6	0.5	1	23	611	635	611	635	0.97
10	31	0.00065	0.051	14.2	0.3	1	23	690	712	690	712	0.98
11	31	0.031	2.4	9.0	5.7	2	23	724	745	723	745	0.96
12	31	0.008	0.62	10.8	1.0	2	23	757	778	756	778	0.96
13	31	0.00062	0.048	14.3	0.6	1	23	788	810	788	810	0.98
14	31	0.11	8.5	7.2	5.3	1	23	839	861	839	861	0.96
15	31	0.00091	0.07	13.8	3.5	1	23	872	894	872	894	0.97
16	31	7.3e-05	0.0057	17.2	1.1	1	23	902	924	902	924	0.98
17	31	0.00065	0.05	14.2	0.2	2	23	944	966	943	966	0.97
18	31	0.33	26	5.7	1.2	1	23	984	1006	984	1006	0.96
19	31	0.25	20	6.1	3.6	1	23	1013	1035	1013	1035	0.96
20	31	0.00037	0.028	15.0	4.4	2	23	1046	1068	1045	1068	0.95
21	31	0.00088	0.068	13.8	0.2	2	23	1091	1112	1090	1112	0.95
22	31	8.3	6.4e+02	1.3	0.3	2	20	1116	1134	1115	1135	0.82
23	31	3.6	2.8e+02	2.5	3.1	2	23	1155	1177	1154	1177	0.93
24	31	0.00099	0.077	13.7	0.4	2	23	1193	1214	1192	1214	0.95
25	31	0.085	6.6	7.6	5.0	3	23	1222	1242	1220	1242	0.96
26	31	0.0018	0.14	12.8	1.8	2	23	1253	1275	1252	1275	0.95
27	31	1.2	92	4.0	4.0	3	23	1293	1310	1292	1310	0.91
28	31	0.19	15	6.5	3.6	2	21	1314	1333	1314	1334	0.94
29	31	0.0032	0.25	12.0	0.4	2	23	1414	1436	1413	1436	0.96
30	31	9.1	7e+02	1.2	0.8	2	23	1452	1470	1451	1470	0.68
31	31	0.037	2.9	8.7	3.1	2	21	1474	1493	1473	1494	0.95

Sequence Information

Coding Sequence: ATGGCTCTTAAGCTCGGAAAATGCAGGCTTTGCCTCAAACTTGGGGATTTCTACTCAATCTTTGCCGTCGATAATAACTTGCAACTCGCCGAAATGGTCATGGAATGTGCACGGGTTAAAATACAAGAAGGGGATGGTCTTACAGATAAAATATGCGGAGAGTGCGTACAGAAATTGAGCAGTGCGTATATATTTAAACAACAATGTGAAAGATCGGATCAAGAATTACGACGAAGTTATGTTCCACCGCCAGGTTTTATTTCATCAACACCACCGCCAATTAACAGGCAGAGCAGTGATTCTGCTTTCTCCAATCAGACGGATACTTCTAAACTATCTTCAGCCGGCGAAAGTAAAGTTACGCCGATCAGTAGAATTCGTAAAAGAAGTAGGGATAGCATCGATTATGCATCCAGTAGCAGTATCTCCCACGAATACCACCCTGTTAGTTCTAAGAGAGTTGAAGAACTACGAAAGTCTCAAAAAATGAGAAAAATTCAGAACAATGATGACTCCGATTTCGAAGATAACGCTACCTCTTTCTTCTCAGGTGGAACAGACTCTGATGAACCTCTTGAGTTTAAGTGTGACATCTGTTCTAAAGCATTTAAAGCCTATCGTAGCATGATTTCTCATAAAAAATGTCACAGTCGTAGGGATAGACAACACCAATCGGGTATGGCGGCAGCCTCAACTACGGTCATGAAACCAACTCCCGAAAAAGAAGCTCAGATAGCTGAGGTCAAAGATGAAGACAAATCTACATGTGAGACCTGCGGAAAAACTTTTAAATTAAAAATTATGCTAAAGAGGCACTATGAAGTTTGTGGTAAACTTATAGATAAAGAACTTAAAGTATCGTTAGAACCAATAGACGCTGTTCCTAATGAAAATAAACTTAATTGCGAAACGTGTTTAGCTCCGTTTAAAACTATCGACAATTTACGAAAACACATGAGAGTTGTGCATGCCGCAGTTCTTAAAATAGATGAACCTTTGTCGGTGGAGAATAACAAAATTTCCGTACCATGTTTCTATTGTTCAAAACCATTTGAAGATTTCTATTCACATTCAGCTCATTTTAAAGTTTGTCCGAACAGAGATGATAGTCTTACTTTTGTCTGTACGGTATGTAATAAATCACTTGTGAAAAAAGCAAGCTACTTTAACCATTTGAAGGCCCATTTTTATCCATCGGATAATGTAAAGCCAAGCAAATCTCCAGTTCCAAAAACATATACATGCCGCTTTTGCAAAATGAAATTACCAAATCAAGAATCTCTGATAAAACACCTGGCTGCGCACATGTCTAGTGTTAAAGAACCTGATGATGGTGGCGATGAAGAGTCTAGGAGTACCTTGGAGGATTCTGTTTCTTTACACTCAGAGTATAATAACACTTCAATAAGGACTGGTCCATTCAAATGTACAATGTGCGATAAAGGCTTCAAGTATAAAAAGGCTTTAGACACGCATCAGATAGTAAAACACTCAAATGTAAGTGTTAAAGTTGAACCCCCAGATATATCCTCAGATCTACTGAGTGAAACATTGAACGATCATAATGTTAATCAATCCGATTCTGAATCCAGCAATGATGAGGGTGATGATAACACTTGTGACATCTGCGAGAAACAGTTCTCCTACAAGCGCTTACTGATTAATCACAAGCGAACGAAACACAATATGAGCTCGGGAACAAAGAGAGCAAAGGTCAGCTTAAAGCAATGTCTAGTGCGCTGTTTAATATGTGACATTGAGATGAAAGTTGAAGCTATAAACGACCATAACATGAAGCACATATCCTCTAACGTAAAACCTCGCAATCTTTACACTTGCGTGGATTGTCCGGACCAGCAGTTTAAAAGCTGCAGTGCCCTAGCTAATCATATAAAAATGGTACATAGATTAAATCAACCGGCAACTAAACCGATATCGAGCATGCCCGTGGATCCTCCGGATATGGCGGATTTTTGTGAAGTCGTTGTGACAAAGGCGGAACCCCTGGACAGTGTCCAGAGTCACAACGGCTTTGGGGAAGGCTCCGCCTATGCGACTGTTGATGGATTTACATGTCCCACTTGCAGCAAAGTTATGCCGACACTCATCTCTCTAAAGAGACATATGAACTGGCACACAAACGTCGGAAATAATATTGAAAAGAAGTTGGAGTGTTTTGTATGTCGAGAGACATTTAGATTCCAGTGCCATTACAAAATTCATATGAAAGAACATTATAACGACCCAAACCTTGATCCCAAACACTTGACTTGCCCCATCTGTAATAGGAAAAGCAAACATCTTCGTGCTGCGCAAGCACATATGAATTACCACAAACAGACTCGATTTAAGACCAAAGACTATGAGTGTTCCATTTGTAAGAAAGTGTTTCAGACTAGAAGAGTCTACCTGACTCATATGGCTATCCACTTCAAACGAGGGGAATCGGCAAACAATACAGTAATTGGATCTGCAATACCCACAACTGCTGATAAGACTGCCTTCGATGGAACCCATACTTGCAAAATATGCAATAAAGTATGCGAATCTGAAGCCTCGCTTAAATGCCACATGAGCTGGCATAATTCTAAAACTTTACTGTACGGTGCACGTCACGAGTGTGATATATGTCACTTACAATTCACCAACAAAGGTCGGCTTAAAGTCCATGAGCGATCTCACTTCGAAGACGAAAATGGTCCTTATAAGTGTCACATCTGCGGAAAAGGTTTTATTGCGGAAGAATATTTCCGAAGACATGTTAAAGGACATAATTTCGACCATCAGTCTCACAAAAAACGAATCGAAAAGCTCAGAAAGGGTAAAGTAAAGTGCCCAATCTGCACTAGGTTCTATCCGGATGTCGTCAAACTGATACGTCACTTGCGCCGAACTCATCCCCAGAGCAAAATGATTAAAGAAGATCCGGACGCCCCGCCTCAAATGTACTACCCGTGCAAATTATGCGCCAAAGTTTTCCTTAACGAGCGCAGATTGCAACACCACGAAGAGTCGCATTTGCGTAAGCCCGAATTTTTCAAATGTAAATTTTGCGGAAAGAAGACAATTTCTCTGAAAAGCCATAGAATCCATATTAAAGGACATTTGACTCAGAAATACCTGGACGAGCCACTGAAGTGTCAGCATTGTGATAAATCGTTCTCTCGCGGCTACGATCTTCATTATCACTTACGTGACTCACATAACATCGAGGAAACCTGGATCGCTGACAGAAACAGTCAAGACCTCAATGGACCTCTTAAGGATCTACAATGTTCCATCTGTTTTAAAGTTCTTGCCAGTAAAGGAAACTATGAAAGACACATTGACTACCATAATTCCCTTCGATGCAACTACTGCTTCGATTACTTTAGCACTCTCAGGTTTTTGGAGGGGCACTTGGCGTTCAGCTGCGACAAGAAAAAATTAATCGGCGATACAGAGATTTACCCAAGAAAGGTTAAATGTGAAATTTGTTATAAGGCATTTCATATACAAGTAAAGTTGGATTGCCATTTGCGAACTCAACATGGAGTGAAATCTTTCAAGGAGGCAACTGAAAGTAAGAAGGACCTCGTGTGTGACTATTGCTTTAGAGTTTTCGAGAATGAGTATGCATTGACCAACCATAAACTTTATCATAGAACTATTGGGTATTTTGGATGCTTATACTGTAACAGGAAATTTAACACTCTGACGCTTTATAGAAAACATAAAAATCACCACTTTGCACAACTAAACGTAGAGAACCCTACAAAATGCGAGCACTGCGATAAAACGTTTGTGGCTTTTAGAGAGTTCATATACCACATGCGGGATGAACACGGCGATGATAAGGAGTGGGTCGTATACCCAAAAGAGTCGATCGAAGAAATGTGCAATATTTGCAACAAAATGTTTTTTAATTTGCATCGGCATCTTTCTTATCACGAGGAAAATAGATGTAAAAAATGTGGGGAGTACTTTTACTCGCGCACCGATTTTGATAATCACATTTGTCATATCGATAGTGAAGATGAGGTCGACGGCAACGTCGAAAATGATATTCGACCAAAGTATGAGGAATGCAAATTTTGTTTTAAACCTATAACTCAGAAAACTAAAAAGAAACATGATCAATTACATAAAGGATCCGGTTCTATATCGTGTAGGTTCTGTATTCTTAAGTTCAAAACCATTGACGCTTTCAACATTCACGCGTTTTCTCATAGAAGTCGTAAGTATAAGAAACATCCTATACGATGTCGTATTTGTAAGGAGCAATTTGTTCAATATGGTCCTTTCATGCGTCACATGAAGTCTGTACATAAATCTACTAAGAAGATGCATTATAGAACTACAGTAAAGCCTGAAAAATGTGAAGTATGTGGCGATAATTTCCCGAATCTACACAACCACTATCGAGCTCATTTGTTAAATCAGTGTCAGCTTTGTAGCAAATACTTCACTTCTAGTAAATTGTTTTCACAACACATGTGCGATAAAGAAGATAGTGATCCTACCAAAGTGTTCACAAGCGATGCCAATCTTCCGCTACTTATTAATACCTATATTCCATTGGATGAAAAGGATGACGAAAAGTACTATGGATATGGTGAAGACGAAGAGGAAGTGGATGTTGCAAACGAATTGCATCAAAATGACGACAGTCAAAACTCAATAGATACAGCCGAAAGCTCACTGCACGAGATGGTACATGCGCCAATCATTTCCGATGTGCTATCCTTGTATGAGAGAAAAGAAGTTATCAACGTTGAAGAGGTGGAAAAGAAAGATGATAATTGTATCGTTGAACTTACGGATGAAGACTCGGTTGGTTTTCAAGAGAATCCCTCTTCAGTTATTACTATTGATGATGATTGA
Protein Sequence: MALKLGKCRLCLKLGDFYSIFAVDNNLQLAEMVMECARVKIQEGDGLTDKICGECVQKLSSAYIFKQQCERSDQELRRSYVPPPGFISSTPPPINRQSSDSAFSNQTDTSKLSSAGESKVTPISRIRKRSRDSIDYASSSSISHEYHPVSSKRVEELRKSQKMRKIQNNDDSDFEDNATSFFSGGTDSDEPLEFKCDICSKAFKAYRSMISHKKCHSRRDRQHQSGMAAASTTVMKPTPEKEAQIAEVKDEDKSTCETCGKTFKLKIMLKRHYEVCGKLIDKELKVSLEPIDAVPNENKLNCETCLAPFKTIDNLRKHMRVVHAAVLKIDEPLSVENNKISVPCFYCSKPFEDFYSHSAHFKVCPNRDDSLTFVCTVCNKSLVKKASYFNHLKAHFYPSDNVKPSKSPVPKTYTCRFCKMKLPNQESLIKHLAAHMSSVKEPDDGGDEESRSTLEDSVSLHSEYNNTSIRTGPFKCTMCDKGFKYKKALDTHQIVKHSNVSVKVEPPDISSDLLSETLNDHNVNQSDSESSNDEGDDNTCDICEKQFSYKRLLINHKRTKHNMSSGTKRAKVSLKQCLVRCLICDIEMKVEAINDHNMKHISSNVKPRNLYTCVDCPDQQFKSCSALANHIKMVHRLNQPATKPISSMPVDPPDMADFCEVVVTKAEPLDSVQSHNGFGEGSAYATVDGFTCPTCSKVMPTLISLKRHMNWHTNVGNNIEKKLECFVCRETFRFQCHYKIHMKEHYNDPNLDPKHLTCPICNRKSKHLRAAQAHMNYHKQTRFKTKDYECSICKKVFQTRRVYLTHMAIHFKRGESANNTVIGSAIPTTADKTAFDGTHTCKICNKVCESEASLKCHMSWHNSKTLLYGARHECDICHLQFTNKGRLKVHERSHFEDENGPYKCHICGKGFIAEEYFRRHVKGHNFDHQSHKKRIEKLRKGKVKCPICTRFYPDVVKLIRHLRRTHPQSKMIKEDPDAPPQMYYPCKLCAKVFLNERRLQHHEESHLRKPEFFKCKFCGKKTISLKSHRIHIKGHLTQKYLDEPLKCQHCDKSFSRGYDLHYHLRDSHNIEETWIADRNSQDLNGPLKDLQCSICFKVLASKGNYERHIDYHNSLRCNYCFDYFSTLRFLEGHLAFSCDKKKLIGDTEIYPRKVKCEICYKAFHIQVKLDCHLRTQHGVKSFKEATESKKDLVCDYCFRVFENEYALTNHKLYHRTIGYFGCLYCNRKFNTLTLYRKHKNHHFAQLNVENPTKCEHCDKTFVAFREFIYHMRDEHGDDKEWVVYPKESIEEMCNICNKMFFNLHRHLSYHEENRCKKCGEYFYSRTDFDNHICHIDSEDEVDGNVENDIRPKYEECKFCFKPITQKTKKKHDQLHKGSGSISCRFCILKFKTIDAFNIHAFSHRSRKYKKHPIRCRICKEQFVQYGPFMRHMKSVHKSTKKMHYRTTVKPEKCEVCGDNFPNLHNHYRAHLLNQCQLCSKYFTSSKLFSQHMCDKEDSDPTKVFTSDANLPLLINTYIPLDEKDDEKYYGYGEDEEEVDVANELHQNDDSQNSIDTAESSLHEMVHAPIISDVLSLYERKEVINVEEVEKKDDNCIVELTDEDSVGFQENPSSVITIDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01205104; iTF_01205905; iTF_01204256; iTF_01202646; iTF_01203448; iTF_00879021;
90% Identity: iTF_01205104; iTF_01205905; iTF_01202646; iTF_01203448; iTF_01204256;
80% Identity: -