Pman009779.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pieris mannii
Gene Symbol
-
Assembly
GCA_029001895.1
Location
CM054836.1:7878832-7892930[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.28 24 6.2 3.7 1 21 193 213 193 215 0.91
2 29 0.00046 0.039 15.0 0.3 2 20 254 272 253 274 0.93
3 29 0.0003 0.025 15.6 0.2 2 23 300 322 299 322 0.95
4 29 7.2 6.1e+02 1.8 0.7 2 15 342 355 341 362 0.79
5 29 0.0017 0.15 13.2 0.8 1 23 372 394 372 394 0.97
6 29 0.016 1.3 10.2 0.4 1 23 412 434 412 434 0.96
7 29 0.00014 0.012 16.6 1.7 1 23 473 496 473 496 0.97
8 29 0.00016 0.014 16.4 2.0 2 23 538 560 538 560 0.97
9 29 0.011 0.96 10.6 0.5 1 23 610 634 610 634 0.97
10 29 0.00081 0.069 14.2 0.3 1 23 689 711 689 711 0.98
11 29 0.038 3.2 9.0 5.7 2 23 723 744 722 744 0.96
12 29 0.01 0.84 10.8 1.0 2 23 756 777 755 777 0.96
13 29 0.00077 0.065 14.3 0.6 1 23 787 809 787 809 0.98
14 29 0.14 12 7.2 5.3 1 23 838 860 838 860 0.96
15 29 0.0011 0.095 13.8 3.5 1 23 871 893 871 893 0.97
16 29 9.1e-05 0.0077 17.2 1.1 1 23 901 923 901 923 0.98
17 29 0.0008 0.068 14.3 0.2 2 23 943 965 942 965 0.97
18 29 0.41 35 5.7 1.2 1 23 983 1005 983 1005 0.96
19 29 0.32 27 6.1 3.6 1 23 1012 1034 1012 1034 0.96
20 29 0.00045 0.038 15.0 4.4 2 23 1045 1067 1044 1067 0.95
21 29 0.0011 0.093 13.8 0.2 2 23 1090 1111 1089 1111 0.95
22 29 4.4 3.7e+02 2.5 3.1 2 23 1154 1176 1153 1176 0.93
23 29 0.0012 0.1 13.7 0.4 2 23 1192 1213 1191 1213 0.95
24 29 0.11 8.9 7.6 5.0 3 23 1221 1241 1219 1241 0.96
25 29 0.0023 0.19 12.8 1.8 2 23 1252 1274 1251 1274 0.95
26 29 3.5 2.9e+02 2.8 4.8 3 23 1292 1309 1291 1309 0.90
27 29 0.23 20 6.5 3.6 2 21 1313 1332 1313 1333 0.94
28 29 0.004 0.34 12.1 0.4 2 23 1413 1435 1412 1435 0.96
29 29 0.3 25 6.2 3.3 2 20 1473 1491 1472 1493 0.94

Sequence Information

Coding Sequence
ATGGCTCTTAAGCTCGGAAAATGCAGGCTTTGCCTCAAACTTGGGGATTTCTACTCAATCTTTGCCGTGGATAATAACTTGCAACTCGCCGAAATGGTCATGGAATGTGCACGGgttaaaatacaaGAAGGGGATGGTCTTACAGATAAAATATGCGGAGAGTGCGTACAAAAATTGAGCAGTGcgcatatatttaaacaacaatGTGAAAGATCGGATCAAGAATTACGACGAAATTATGTTCCACCGCCAGGTTTTATTTCATCAACACCACCGCCAATTAACAGGCAGAGCAGTGATTCTGCTTTCTCCAATCACACGGATACTTCTAAACTGTCTTCAGCCGGCGAAAGTAAAGTTACGCCGATCAGTAGAATTCGTAAAAGAAGTAGGGATAGCATAGATAATGCATCCAGTAGCAGTATCTCCCACGAATACCCTGTTAGTTCTAAGAGAGTTGAAGAACTACGAAAGTCtcaaaaaatgagaaaaaTTCAGAACAATGATGACTCCGATTTCGAAGATAACACTACCTCTTTCTTCTCAGGTGGAACAGACTCTGATGAACCTCTTGAGTTTAAGTGTGACATCTGTTCTAAAGCGTTTAAAGCCTATCGTAGCATGATTTCTCATAAAAAATGTCACAGTCGTAGGGATAGACAACACCAATCGGGTATGGCGGCAACCTCGACTACGGCCATGAAACCAACTCCCGAAAAAGAAGCTCAGATAGCTGAGGTCAAAGATGAAGACAAATCTACATGTGAGACCTGCggaaaaacttttaaattaaaaattatgctGAAGAGGCACTATGAAGTTTGTGGTAAACTTATTGATAAAGAACTTAAAATATCGTTAGAACCAATAGACGCTGTTcctaatgaaaataaacttaattgcGAAACGTGTTTAGCTCCGTTTAAAACTATCGACAATTTACGAAAACACATGAGAGTTGTGCATGCCGCAGTTCTTAAAATAGATGAACCTTTGTCGGTGGAGAATAACAAAATTTCCGTACCATGCTTCTATTGTTCAAAACCATTTGAAGATTTCTATTCACATTCCGCTCATTTTAAAGTTTGTCCAAACAGAGATGATAGTCTTACTTTTGTCTGTACGGTATGTAATAAATCACTTGTGAAAAAGGCCAGCTACTTTAACCATTTGAAGGCCCATTTTTATCCATCGGATAATGTAAAGCCAAGCAAATCTCCAGTTCCAAAAACATACACATGCCGCTTTTGCAAAATGAAATTACCAAATCAAGAATCTCTAATAAAACACCTGGCTGCGCACATGTCTAGTGTTGAAGAACCTGATGATGGTGGCGATGAAGAGTCTAGgaGTACCTTGGAGGATTCTGCTTCTTTACACTCAGAATATAATAACACTTCAATAAGGACTGGTTCATTCAAATGTACAACGTGCGATAAAGGCTTCAAGTATAAAAAGGCTTTAGACACGCATCAGATAGTAAAACACTCAAATGTAAGTGTTAAAGTTGAACCTCCAGATATATCCTCAGATCTGCTGAGTGAAACATTGAATGATCATAATGTTAATCAATCCGATTCTGAGTCCAGCAATGGTGAGGGTGATGATAACACTTGTGACATCTGCGAGAAACAGTTCTCCTACAAGCGCTTACTGATTAATCACAAGCGAACGAAACACAACATGAGCTCGGGAACAAAGAGATCAAAGGTCAGCTTAAAGCAATGTCTAGTGCGCTGTTTAATATGTGACATTGAGATGAAAGTTGAAGCTATAAACGACCATAACATGAAGCACATATCCTGTAACGTAAAACCTCGCAATCTTTACACTTGCGTGGATTGTCCGGACCAGCAGTTTAAAAGCTGCAGTGCCCTAGCTAATCATATCAAAATGGTACATAGATTAAATCTACCGGCAACTAAACCGATATCGAGCATGCCCGTGGATCCTCCAGATATGGCGGATTTTTGTGAAGTCGTTGTGACAAAGGCGGAACCCCTGGACAGTGTCCAGAGTCACAACGGCTTTGGGGAAGGCTCCGCCTATGCGACTGTTGATGGATTTACATGTCCCACCTGCAGCAAAGTTATGCCGACACTCATCTCTCTAAAGAGACATATGAACTGGCACACAAACGTcggaaataatattgaaaagaagTTGGAGTGTTTTGTATGTCGAgagACATTTAGATTCCAGTGCCATTACAAAATTCATATGAAAGAACATTATAACGACCCAAACCTTGATCCTAAACACTTGACTTGCCCCATCTGTAATAGGAAAAGCAAACATCTCCGTGCTGCGCAAGCACATATGAATTACCACAAACAGACTAGATTTAAGACCAAAGACTATGAGTGTTCCATTTGTAAGAAAGTTTTTCAGACTAGAAGAGTCTATCTGACTCATATGGCTATCCACTTCAAACGAGGGGAATCGGCAAACAATACAGTAATTGGATCTGTAATGCCCACAACTGCTGATAAGACTGCCTTCGATGGAACCCATACTTGCAAAATATGCAATAAAGTATGCGAATCTGAAGCCTCGCTTAAATGCCACATGAGCTGGCATAATTCTAAAACTTTACTGTACGGTGCACGTCACGAGTGTGATATATGTCACTTGCAATTCACCAACAAAGGTCGGCTTAAAGTCCATGAGCGATCTCATTTCGAAGACGAAAATGGTCCTTATAAGTGTCACATCTGCGGAAAAGGTTTTATTGCGGAAGAGTATTTCCGAAGACATGTAAAAGGACATAATTTCGACCATCAGTCTCACAAAAAACGAATCGAAAAGCTCAGAAAGGGTAAAGTAAAGTGCCCAATCTGCACTAGGTTCTATCCGGATGTCGTCAAACTGATACGTCACTTGCGCCGAACTCATCCCCAGAGCAAAATGATTAAAGAAGATCCGGACGCCCCGCCTCAAATGTACTACCCGTGCAAATTATGCGCCAAAGTGTTCCTTAACGAGCGCAGATTGCAACACCACGAAGAGTCGCATTTGCGTAAGCCCGAATTCTTTAAGTGTAAATTTTGCGGAAAGAAGACCATTTCTCTGAAAAGCCATAGAATCCATATTAAAGGACATTTGACTCAGAAATACCTGGACGAGCCACTGAAGTGTCAGCATTGTGATAAATCGTTCTCTCGCGGCTACGATCTTCATTATCATTTACGTGACTCACATAACATCGAGGAAACCTGGATCGCTGACAGAAACAGTCAAGACCTTAATGGACCTCTTAAAGATCTACAATGTTCCATCTGTTTTAAAGTTCTTGCCAGTAAAGGAAACTATGAAAGACACATTGACTACCATAATTCCCTTCGATGCAACTACTGCTTCGATTACTTTAGCACTCTCAGGTTTTTGGAGGGGCACTTGGCGTTCAGCTGCGACAAGAAAAAATTAATCGGCGATACAGAGATTTACCCAAGAAAGgttaaatgtgaaatttgtTATAAGGCATTTCATATACAAGTAAAGTTGGATTGCCATTTGCGAACTCAACATGGAGTAAAATCTTTCAAGGAGGCAACTGAAAGTAAGAAGGACCTCGTGTGTGACTATTGCTTTAGAGTTTTCGAAAATGAATATGCATTGACCAACCATAAACTTTACCATAGAACTATTGGGTATTTTGGATGCTTATACTGTAACAGGAAGTTTAACACTCTGACGCTTTatagaaaacataaaaatcacCACTTTGCACAACTAAACGTAGAGAACCCTACAAAATGCGAGCACTGCGATAAAACGTTTGTAGCTTTTAGAGAGTTCATATACCACATGCGGGATGAGCACGGCGATGATAAGGAGTGGGTCGTATACCCAAAAGAGTCGATCGAAGAAATGTGCAATATTTGCaagaaaaggttttttaactTGCATCGGCATCTTTCTTATCACGAGGAAAATAGATGTAAAAAATGTGGGGAGTACTTTTACTCGCGCACCGATTTTGATAATCACATTTGTCATATCGATAGTGAAGATGAGGTCGACGACAACGTCGAAAATGATATCCGACCAAAATATGAGGAAtgcaaattttgttttaaacctATAACTCAGAAAACTAAAAAGAAACATGATCAATTACATAAAGGATCCGGTTCTATATCGTGTAGGTTCTGTATTCTTAAGTTCAAAACCATTGACGCTTTCAACATTCACGCGTTTTCTCATAGAAGTCGTAAGTATAAGAAACATCCTATACGATGTCGTATTTGTAAGGAGCAATTTGTTCAATATGGTCCTTTCATGCGTCACATGAAGTCTGTACATAAATCTACTAAGAAGATGCATTATAGAACTACAGTAAAGCCTGAAAGATGTGAAGTATGTGGCGATCATTTCCCTAATCTACACAACCACTATCGAGCTCATTTGTTAAATCAGTGTCAGCTATGTAGCAAATACTTCACTTCTAGTAAATTGTTTTCACAACACACGTGCGATAAAGAAGATAGTGATCCTACGAAAGTGTTCACAAGCGATGCCAATCTTCCGTTACTTATTAATACCTATATTCCATTGGATGAAAAAGATGACGAAAAGTACTATGGATATGGTGAAGAGGAAGTGGATGATGCAAACGAATTGCATCAAAATGACGACAGTCAAAACTCAATAGATACGGCCGAAAGCTCACTGCACGAGATGGTACATGCGCCAATCATTTCTGATGTGCTATCCTTGTATGAGAGAAAAGAAGTTATCAACGTCGAAGAGGTGGAAAAGAAAGATGATAATTGTATCGTTGAACTTACGGATGAAGACTCGGTTGGTTTTCAAGAGAATCCCTCTTCAGTTATTACTATTGATGATGATTGA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFAVDNNLQLAEMVMECARVKIQEGDGLTDKICGECVQKLSSAHIFKQQCERSDQELRRNYVPPPGFISSTPPPINRQSSDSAFSNHTDTSKLSSAGESKVTPISRIRKRSRDSIDNASSSSISHEYPVSSKRVEELRKSQKMRKIQNNDDSDFEDNTTSFFSGGTDSDEPLEFKCDICSKAFKAYRSMISHKKCHSRRDRQHQSGMAATSTTAMKPTPEKEAQIAEVKDEDKSTCETCGKTFKLKIMLKRHYEVCGKLIDKELKISLEPIDAVPNENKLNCETCLAPFKTIDNLRKHMRVVHAAVLKIDEPLSVENNKISVPCFYCSKPFEDFYSHSAHFKVCPNRDDSLTFVCTVCNKSLVKKASYFNHLKAHFYPSDNVKPSKSPVPKTYTCRFCKMKLPNQESLIKHLAAHMSSVEEPDDGGDEESRSTLEDSASLHSEYNNTSIRTGSFKCTTCDKGFKYKKALDTHQIVKHSNVSVKVEPPDISSDLLSETLNDHNVNQSDSESSNGEGDDNTCDICEKQFSYKRLLINHKRTKHNMSSGTKRSKVSLKQCLVRCLICDIEMKVEAINDHNMKHISCNVKPRNLYTCVDCPDQQFKSCSALANHIKMVHRLNLPATKPISSMPVDPPDMADFCEVVVTKAEPLDSVQSHNGFGEGSAYATVDGFTCPTCSKVMPTLISLKRHMNWHTNVGNNIEKKLECFVCRETFRFQCHYKIHMKEHYNDPNLDPKHLTCPICNRKSKHLRAAQAHMNYHKQTRFKTKDYECSICKKVFQTRRVYLTHMAIHFKRGESANNTVIGSVMPTTADKTAFDGTHTCKICNKVCESEASLKCHMSWHNSKTLLYGARHECDICHLQFTNKGRLKVHERSHFEDENGPYKCHICGKGFIAEEYFRRHVKGHNFDHQSHKKRIEKLRKGKVKCPICTRFYPDVVKLIRHLRRTHPQSKMIKEDPDAPPQMYYPCKLCAKVFLNERRLQHHEESHLRKPEFFKCKFCGKKTISLKSHRIHIKGHLTQKYLDEPLKCQHCDKSFSRGYDLHYHLRDSHNIEETWIADRNSQDLNGPLKDLQCSICFKVLASKGNYERHIDYHNSLRCNYCFDYFSTLRFLEGHLAFSCDKKKLIGDTEIYPRKVKCEICYKAFHIQVKLDCHLRTQHGVKSFKEATESKKDLVCDYCFRVFENEYALTNHKLYHRTIGYFGCLYCNRKFNTLTLYRKHKNHHFAQLNVENPTKCEHCDKTFVAFREFIYHMRDEHGDDKEWVVYPKESIEEMCNICKKRFFNLHRHLSYHEENRCKKCGEYFYSRTDFDNHICHIDSEDEVDDNVENDIRPKYEECKFCFKPITQKTKKKHDQLHKGSGSISCRFCILKFKTIDAFNIHAFSHRSRKYKKHPIRCRICKEQFVQYGPFMRHMKSVHKSTKKMHYRTTVKPERCEVCGDHFPNLHNHYRAHLLNQCQLCSKYFTSSKLFSQHTCDKEDSDPTKVFTSDANLPLLINTYIPLDEKDDEKYYGYGEEEVDDANELHQNDDSQNSIDTAESSLHEMVHAPIISDVLSLYERKEVINVEEVEKKDDNCIVELTDEDSVGFQENPSSVITIDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01206751;
90% Identity
iTF_01206751;
80% Identity
-