Basic Information

Insect: Pieris brassicae
Gene Symbol: -
Assembly: GCA_905147105.1
Location: LR989935.1:15536618-15546292[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 32 0.16 14 6.7 4.5 1 21 194 214 194 216 0.91

2 32 0.00027 0.023 15.4 0.4 2 20 253 271 252 273 0.93

3 32 0.00024 0.02 15.6 0.2 2 23 299 321 298 321 0.95

4 32 4.7 3.9e+02 2.1 0.7 2 14 341 353 340 361 0.79

5 32 0.0014 0.12 13.2 0.8 1 23 371 393 371 393 0.97

6 32 0.0018 0.15 12.9 0.6 1 23 411 433 411 433 0.96

7 32 0.00012 0.0095 16.6 1.7 1 23 472 495 472 495 0.97

8 32 0.00013 0.011 16.4 2.0 2 23 535 557 535 557 0.97

9 32 0.0092 0.76 10.6 0.5 1 23 607 631 607 631 0.97

10 32 0.00066 0.054 14.2 0.3 1 23 686 708 686 708 0.98

11 32 0.013 1 10.2 5.4 2 23 720 741 719 741 0.96

12 32 0.0081 0.67 10.8 1.0 2 23 753 774 752 774 0.96

13 32 0.00063 0.052 14.3 0.6 1 23 784 806 784 806 0.98

14 32 0.25 21 6.1 6.5 1 23 835 857 835 857 0.96

15 32 0.0017 0.14 13.0 3.6 1 23 868 890 868 890 0.97

16 32 7.4e-05 0.0061 17.2 1.1 1 23 898 920 898 920 0.98

17 32 0.00065 0.054 14.3 0.2 2 23 940 962 939 962 0.97

18 32 0.66 54 4.8 0.5 1 23 980 1002 980 1002 0.91

19 32 0.26 21 6.1 3.6 1 23 1009 1031 1009 1031 0.96

20 32 0.00045 0.037 14.8 4.6 2 23 1042 1064 1041 1064 0.95

21 32 0.00089 0.073 13.8 0.2 2 23 1087 1108 1086 1108 0.95

22 32 4 3.3e+02 2.3 0.7 2 20 1112 1130 1111 1131 0.84

23 32 3.6 3e+02 2.5 3.1 2 23 1151 1173 1150 1173 0.93

24 32 0.001 0.082 13.7 0.4 2 23 1189 1210 1188 1210 0.95

25 32 0.47 39 5.2 4.6 3 23 1218 1238 1216 1238 0.96

26 32 0.0018 0.15 12.8 1.8 2 23 1249 1271 1248 1271 0.95

27 32 0.79 65 4.6 4.5 2 23 1288 1306 1288 1306 0.92

28 32 0.21 17 6.4 3.5 2 21 1310 1329 1310 1330 0.94

29 32 1.5 1.2e+02 3.7 0.4 2 23 1378 1399 1377 1399 0.93

30 32 0.0033 0.27 12.1 0.4 2 23 1410 1432 1409 1432 0.96

31 32 9.1 7.6e+02 1.2 0.8 2 23 1448 1466 1447 1466 0.68

32 32 0.23 19 6.3 4.8 2 20 1470 1488 1469 1490 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	32	0.16	14	6.7	4.5	1	21	194	214	194	216	0.91
2	32	0.00027	0.023	15.4	0.4	2	20	253	271	252	273	0.93
3	32	0.00024	0.02	15.6	0.2	2	23	299	321	298	321	0.95
4	32	4.7	3.9e+02	2.1	0.7	2	14	341	353	340	361	0.79
5	32	0.0014	0.12	13.2	0.8	1	23	371	393	371	393	0.97
6	32	0.0018	0.15	12.9	0.6	1	23	411	433	411	433	0.96
7	32	0.00012	0.0095	16.6	1.7	1	23	472	495	472	495	0.97
8	32	0.00013	0.011	16.4	2.0	2	23	535	557	535	557	0.97
9	32	0.0092	0.76	10.6	0.5	1	23	607	631	607	631	0.97
10	32	0.00066	0.054	14.2	0.3	1	23	686	708	686	708	0.98
11	32	0.013	1	10.2	5.4	2	23	720	741	719	741	0.96
12	32	0.0081	0.67	10.8	1.0	2	23	753	774	752	774	0.96
13	32	0.00063	0.052	14.3	0.6	1	23	784	806	784	806	0.98
14	32	0.25	21	6.1	6.5	1	23	835	857	835	857	0.96
15	32	0.0017	0.14	13.0	3.6	1	23	868	890	868	890	0.97
16	32	7.4e-05	0.0061	17.2	1.1	1	23	898	920	898	920	0.98
17	32	0.00065	0.054	14.3	0.2	2	23	940	962	939	962	0.97
18	32	0.66	54	4.8	0.5	1	23	980	1002	980	1002	0.91
19	32	0.26	21	6.1	3.6	1	23	1009	1031	1009	1031	0.96
20	32	0.00045	0.037	14.8	4.6	2	23	1042	1064	1041	1064	0.95
21	32	0.00089	0.073	13.8	0.2	2	23	1087	1108	1086	1108	0.95
22	32	4	3.3e+02	2.3	0.7	2	20	1112	1130	1111	1131	0.84
23	32	3.6	3e+02	2.5	3.1	2	23	1151	1173	1150	1173	0.93
24	32	0.001	0.082	13.7	0.4	2	23	1189	1210	1188	1210	0.95
25	32	0.47	39	5.2	4.6	3	23	1218	1238	1216	1238	0.96
26	32	0.0018	0.15	12.8	1.8	2	23	1249	1271	1248	1271	0.95
27	32	0.79	65	4.6	4.5	2	23	1288	1306	1288	1306	0.92
28	32	0.21	17	6.4	3.5	2	21	1310	1329	1310	1330	0.94
29	32	1.5	1.2e+02	3.7	0.4	2	23	1378	1399	1377	1399	0.93
30	32	0.0033	0.27	12.1	0.4	2	23	1410	1432	1409	1432	0.96
31	32	9.1	7.6e+02	1.2	0.8	2	23	1448	1466	1447	1466	0.68
32	32	0.23	19	6.3	4.8	2	20	1470	1488	1469	1490	0.94

Sequence Information

Coding Sequence: ATGGCTCTTAAGCTCGGAAAATGCAGGCTTTGCCTCAAACTTGGGGATTTCTACTCAATCTTTGCCGTCGATAATAACTTGCAACTCGCCGAAATGGTCATGGAATGTGCACGAGTTAAAATACAAGAAGGGGATGGTCTTACAGATAAAATATGTGGAGAGTGCGTACAAAAATTGAGCAGTGCGCATATATTTAAACAACAATGTGAAAGATCGGACCAAGAACTACGACGAAATTATGTTCCACCGCCAGGTTTTATTTCATCAACACCACCGCCAATTAACAGACAGAGCAGTGACTCTGCTTTCTCTAATCACACGGATACTTCTAAACTGTCTTCAGCCGGCGAAAGTAAAGTTACCCCGATCAGTAGAATTCGTAAAAGAAGTAGGGATAGCATTGATAATGCATCCAGTAGCAGTATCTCCCACGAATACCATCCTGTTAGTTCAAAGAGAGTTGAAGAACTACGAAAGTCTCAAAAAATTCGAAAAGTTCAGGACAATGATGACTCTGATTTCGAAGATAACACTACCTCCTTCTTCTCCGGTGGAACAGACTCTGATGAACCTCTTGAGTTCAAGTGCGACATCTGTTCTAAATCATTTAAAGCCTATCGTAGCATGATTTCTCATAAAAAATGTCACAGTCGTAGGCAATACCAATCGGCTATGGCGGCAACCTCTACTACGCCTATTAAACCAACTCCTGAAAAAGTAACTCACATAGCTGATGTCAAAGATGAAGACAAATCTAAGTGTGAGACCTGCGGAAAAACATTTAAATTAAAAATTATGTTAAAGAGGCACTATGAAGTTTGCGGTAAACTTATAGATAAAGAACTTAAAATATCGTTAGAACCAATAGACGCTCTTCCTCATGAAAATAACCTTAATTGCGAAACATGTTTAGCTCCGTTTAAAACTATAGACAATTTAAGAAAACACATGAGAGTTGTACATGCCGCAGTTCTTAAAATGGAAGAACCTCTGTCAGTGGAGAATAACAAAATATCCGTGCCATGCTTCTATTGTCAAAAACCATTTGAAGATTTCTATACCCATTCTGCTCATTTTAAAGTTTGTCCAAACAGAGATGATACTCTTACTTTTGTCTGTACGGTATGTAATAAATCACTTGTGAAAAAGGCAAGCTACTTTAACCATTTGAAGGCTCATTTTTACCCATTGGCTAATGTAAAGACAAACAAATCCCCAATCCCAAAAGTATACACATGCCGCTTTTGCAAAAAAAAATTACCAAATCAGGAATCCCTGATAAAACACCTTGCTGCGCACATGTCTAGTGTTGAAGAACCTGATGATGGTGGAGATGAAGAGTCTAGGAGTACCTTGGAGGATTCTGCTTCTTTACACTCAGAGTATAATAACACTTCTATAATGACTGGTCCATTCAAATGTACAACGTGCGATAAAGGCTTCAAGTATAAAAAGGCTTTAGACACGCATCAGATAGTGAAACACTCAAATGTAAGTGTTAAAGTTGAACCCCCAGATATATCGTCAGACCTGCTGACATTGAACGATAATAATGTTAATCAATTCGATTCTGAGTCCAGCAATGGTGAGGGTGATGACAACACATGTGACATCTGTGAAAAACAGTTCTCCTACAAGCGCTTACTGATAAATCACAAGCGAACCAAACACAACATAAGCTCGGGAACAAAGAGAGCAAAGGTCAGCTTAAAGCAATGTCTCGTGCGCTGTTTAATATGTGACATTGAGATGAAAGTTGAAGCTATAAACGACCATAACGTGAAGCACATATCCACGAACATAAAACCTCGCAATCTTTACACTTGCGTGGATTGCCCGGACCAGCAGTTTAAAAGCTGCAGTGCCCTAGCTAATCACATCAAAATGGTGCATAGATTGAATCAACCGGCAATTAAACCGAAGACGAGCATGCCTGTGGATCCTCCGGATATGGCGGATTTTTGTGAAGTCGTTGTGACTAAGGCGGAACCCCTGGACAGTGTCCAGAGTCACAACGACTTCGGGGAAGGCTCCGCCTATGCGACTGTTGATGGTTTTACATGTCCCACCTGCAGCAAAGTTATGCCGACACTCATCTCTCTAAAGAGACATATGAATTGGCACACAAACGTCGGAAATAATATTCAAAAGAAGTTGGAGTGTTTTGTATGCCAAGAGACATTTAGATTCCAGTGCCATTACAAAATTCATATGAAAGAACATTATAACGACCCAAACCTTGATCCTAAACACTTGACATGCCCCATCTGTAATAGGAAAAGCAAGCATCTCCGTGCTGCGCAAGCGCATATGAATTACCACAAACAGACTCGTTTTAAGACCAAAGACTATGAGTGTTCCATTTGTAAGAAAGTCTTTCAAACTAGAAGAGTCTACCTGACGCATATGGCTATCCACTTCAAACGAGGGGAATCGGCAAACAATACAGTAATCGGATCTGTAATACCCACCACTGCTGATAAGACTGCCTTCGATGGAACCCATACTTGCAAAATATGCAATAAAGTATGCGAATCTGAAACCTCGCTTAAATGCCACATGAGCTGGCATAATTCTAAAACGTTACTGTATGGTGCACGTCACGAGTGTGATATATGTCACTTACAATTCACCAACAAAGTTCGGCTTAAAGTCCATGAGCGGTCTCATTTCGAAGACGAAAATGGTCCTTATAAGTGTCATATTTGCGGAAAAGGTTTTATTGCGGAAGAGTATTTCCGAAGACATGTTAAAGGACATAATTTCGACCATCAGTCACACAAAAAGAGAATCGAAAAGCTCAGAAAGGGTAAAGTGAAGTGCCCAATCTGCACTAGGTTCTATCCGGATGTCGTCAAACTGATACGTCACTTGCGCCGTACTCATCCCCAGAGCAAAATGATTAAAGAAGATCCGGACGCCCCGCCTCAAATGTACTACCCGTGCAAATTATGCGCCAAAGTGTTCCTTGACGAGCGAAGATTGCAACACCACGAAGAGGCGCATTTGCGTAAGCCTGAATTTTTTAAGTGTAAATTTTGCGGAAAGAAGACCATTTCTCTGAAAAGCCATAGAATCCATATTAAAGGACATTTGACTCAGAAATACATCGATGAGCCATTGAAGTGTCAGCATTGTGATAAAACGTTCTCTCGCGGTTACGATCTTCATTATCACTTACGTGACTCACATAACATCGAGGAAACCTGGATCGCTGACAGAAATAGCCAAGACCTTAATGGGCCTCTTAAAGATCTACAATGCTCCATCTGTTTTAAAGTTCTTGCCAGTAAAGGAAACTATGAAAGACACATTGACTACCATAATTCCCTTCGATGCAACTACTGCTTCGATCACTTTAGCACTCTGAGGTTTTTAGAGGGACACTTAGCGTTCAGCTGCGAGAAGAAAAAGCTTATCGGCGATACAGAGATTCACCCAAGAAAGGTTAAATGTGAAATTTGTTATAAGGCATTTCATATACAAGTAAAGTTGGATTGTCATTTGCGCACTCAACATGGAGTAAAATCTTTCAAGGAGGCAACTGAAAGTAAGAAGGACCTCGTGTGTGACTATTGCTTTAGAGTTTTCGAGAATGAGTATGCATTGACCAACCATAAACTTTATCATAGAACTATTGGGTATTTTGGATGCTTATACTGTAATAGGAAGTTTAACACTTTGACGGTTTATAGAAAACATAAAAATCACCACTTCGCACAGCTTAACGTACAGAACCCTACAAAGTGCGAGCATTGCGATAAAACATTTGTAGCTTTCAGAGAGTTCATATACCACATGCGGGACGAGCACGGCGATGATAAGGAGTGGGTCGTATACCCAAAGGAGTCAATCGAAGAAAAGTGCAACATTTGCAACAAAATGTTTTTTAACTTGCATCGGCATCTTTCTTATCACGAGGAAAATAGATGTAAAAAATGTGGGGAGTACTTTTACTCGCGAACCGAATTTGATAATCACATTTGTCATATCGATAGTGAAGATGAGGTCGACGGCAACGTTGAAAATGATATTCGACCAAAATATGAGGAATGTAAATTTTGTTTTAAACCGATAACCGTGAAAACTAAAAAGAAACATGATCAATTACATAAAGGATCCGGTTCAATATCGTGTAGGTTCTGTGTTCTCAAGTTCAAAACCATTGACGCTTTCAACATTCACGCGTTTTCTCATCGAAGTCGAAAGTATAAGAAACATCCTATACGATGTCGTATTTGTAAGGAGCAATTTGTTCAATATGGTCCCTTCATGCGCCACATGAAGTCTGTACACAAATCTAGTAAGAAGATGCATTATAGAACTACGGTGAAGCCTGAAAAATGTGAAGTATGTGGCGATAATTTCCCGAATCTACACAACCACTATCGAGCTCATTTGTTAAATCAGTGTCATCTATGTAGCAAATACTTCACTTCTAGTAAATTGTTTTCACAACACACGTGCGATAAAGAAGATAGTGATCCTACGAAAGTGTTTATAAGCGATGCTAATCTTCCGTTACTTATTAATACCTACATTCCATTGGATGAAAAAGATGACGAAAAGTACTATGGATATGGTGAAGATGAAGATGAAGTGGATGATGCAAACGAATTTCCTCAAAATGAAGACAGTCAAAACTCAATAGATACGGCCGAAAGCTCACTGCACGAGATGGTACATGCGCCAATCATTTCTGATGTACTCTCCTTGTATGAGAGAAAAGAGGTTATTAATGTCGAAGAGGTGGAAAATAAAGATGATAATTGTATCGTTGAACTTACGGATGAAGACTCAGTTGGTTATCAAGAGAATCCTTCTTCAGTTATTACTATTGATGACGATTGA
Protein Sequence: MALKLGKCRLCLKLGDFYSIFAVDNNLQLAEMVMECARVKIQEGDGLTDKICGECVQKLSSAHIFKQQCERSDQELRRNYVPPPGFISSTPPPINRQSSDSAFSNHTDTSKLSSAGESKVTPISRIRKRSRDSIDNASSSSISHEYHPVSSKRVEELRKSQKIRKVQDNDDSDFEDNTTSFFSGGTDSDEPLEFKCDICSKSFKAYRSMISHKKCHSRRQYQSAMAATSTTPIKPTPEKVTHIADVKDEDKSKCETCGKTFKLKIMLKRHYEVCGKLIDKELKISLEPIDALPHENNLNCETCLAPFKTIDNLRKHMRVVHAAVLKMEEPLSVENNKISVPCFYCQKPFEDFYTHSAHFKVCPNRDDTLTFVCTVCNKSLVKKASYFNHLKAHFYPLANVKTNKSPIPKVYTCRFCKKKLPNQESLIKHLAAHMSSVEEPDDGGDEESRSTLEDSASLHSEYNNTSIMTGPFKCTTCDKGFKYKKALDTHQIVKHSNVSVKVEPPDISSDLLTLNDNNVNQFDSESSNGEGDDNTCDICEKQFSYKRLLINHKRTKHNISSGTKRAKVSLKQCLVRCLICDIEMKVEAINDHNVKHISTNIKPRNLYTCVDCPDQQFKSCSALANHIKMVHRLNQPAIKPKTSMPVDPPDMADFCEVVVTKAEPLDSVQSHNDFGEGSAYATVDGFTCPTCSKVMPTLISLKRHMNWHTNVGNNIQKKLECFVCQETFRFQCHYKIHMKEHYNDPNLDPKHLTCPICNRKSKHLRAAQAHMNYHKQTRFKTKDYECSICKKVFQTRRVYLTHMAIHFKRGESANNTVIGSVIPTTADKTAFDGTHTCKICNKVCESETSLKCHMSWHNSKTLLYGARHECDICHLQFTNKVRLKVHERSHFEDENGPYKCHICGKGFIAEEYFRRHVKGHNFDHQSHKKRIEKLRKGKVKCPICTRFYPDVVKLIRHLRRTHPQSKMIKEDPDAPPQMYYPCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKSHRIHIKGHLTQKYIDEPLKCQHCDKTFSRGYDLHYHLRDSHNIEETWIADRNSQDLNGPLKDLQCSICFKVLASKGNYERHIDYHNSLRCNYCFDHFSTLRFLEGHLAFSCEKKKLIGDTEIHPRKVKCEICYKAFHIQVKLDCHLRTQHGVKSFKEATESKKDLVCDYCFRVFENEYALTNHKLYHRTIGYFGCLYCNRKFNTLTVYRKHKNHHFAQLNVQNPTKCEHCDKTFVAFREFIYHMRDEHGDDKEWVVYPKESIEEKCNICNKMFFNLHRHLSYHEENRCKKCGEYFYSRTEFDNHICHIDSEDEVDGNVENDIRPKYEECKFCFKPITVKTKKKHDQLHKGSGSISCRFCVLKFKTIDAFNIHAFSHRSRKYKKHPIRCRICKEQFVQYGPFMRHMKSVHKSSKKMHYRTTVKPEKCEVCGDNFPNLHNHYRAHLLNQCHLCSKYFTSSKLFSQHTCDKEDSDPTKVFISDANLPLLINTYIPLDEKDDEKYYGYGEDEDEVDDANEFPQNEDSQNSIDTAESSLHEMVHAPIISDVLSLYERKEVINVEEVENKDDNCIVELTDEDSVGYQENPSSVITIDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01206751;
90% Identity: iTF_01206751;
80% Identity: -