Pmel013241.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pieris melete
Gene Symbol
-
Assembly
GCA_963693345.1
Location
CAVNZK010000081.1:978847-991990[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.062 6.2 8.2 4.8 1 21 194 214 194 216 0.92
2 30 0.00031 0.031 15.4 0.4 2 20 253 271 252 273 0.93
3 30 0.00027 0.027 15.6 0.2 2 23 299 321 298 321 0.95
4 30 5.3 5.3e+02 2.1 0.7 2 14 341 353 340 361 0.79
5 30 0.0016 0.16 13.2 0.8 1 23 371 393 371 393 0.97
6 30 0.0031 0.31 12.3 0.5 1 23 411 433 411 433 0.96
7 30 0.00013 0.013 16.6 1.7 1 23 472 495 472 495 0.97
8 30 0.00015 0.015 16.4 2.0 2 23 537 559 537 559 0.97
9 30 0.014 1.4 10.3 0.6 1 23 609 633 609 633 0.97
10 30 0.00075 0.075 14.2 0.3 1 23 688 710 688 710 0.98
11 30 0.014 1.4 10.2 5.4 2 23 722 743 721 743 0.96
12 30 0.03 3 9.2 1.5 2 23 755 776 754 776 0.96
13 30 0.0016 0.16 13.2 0.6 1 23 786 808 786 808 0.98
14 30 0.13 13 7.2 5.3 1 23 837 859 837 859 0.96
15 30 0.0019 0.19 13.0 3.6 1 23 870 892 870 892 0.97
16 30 1.7e-05 0.0017 19.4 1.2 1 23 900 922 900 922 0.98
17 30 0.00074 0.074 14.2 0.2 2 23 942 964 941 964 0.97
18 30 0.75 75 4.8 0.5 1 23 982 1004 982 1004 0.91
19 30 0.29 29 6.1 3.6 1 23 1011 1033 1011 1033 0.96
20 30 0.00051 0.051 14.8 4.6 2 23 1044 1066 1043 1066 0.95
21 30 0.001 0.1 13.8 0.2 2 23 1089 1110 1088 1110 0.95
22 30 9.5 9.5e+02 1.3 0.3 2 20 1114 1132 1113 1133 0.82
23 30 4.1 4.1e+02 2.5 3.1 2 23 1153 1175 1152 1175 0.93
24 30 0.0011 0.11 13.7 0.4 2 23 1191 1212 1190 1212 0.95
25 30 0.54 54 5.2 4.6 3 23 1220 1240 1218 1240 0.96
26 30 0.0021 0.21 12.8 1.8 2 23 1251 1273 1250 1273 0.95
27 30 0.89 89 4.5 4.5 2 23 1290 1308 1290 1308 0.92
28 30 0.21 21 6.5 3.6 2 21 1312 1331 1312 1332 0.94
29 30 0.0037 0.37 12.0 0.4 2 23 1412 1434 1411 1434 0.96
30 30 1.5 1.5e+02 3.8 3.0 2 20 1472 1490 1471 1492 0.92

Sequence Information

Coding Sequence
ATGGCTCTTAAGCTTGGAAAATGCAGGCTTTGCCTCAAACTTGGGGATTTCTACTCAATCTTTGCCGTCGATAATAATTTGCAACTCGCCGAAATGGTCATGGAATGTGCACGGGTTAAAatacaaGAAGGGGATGGTCTTACAGATAAAATATGTGGAGAGTGCGTACAAAAATTGAGCAGTGCGCATATATTTAAGCAACAATGTGAAAGATCGGACCAAGAATTACGAAGAAATTATGTTCCACCGCCAGGTTTTATTTCATCAACACCACCGCCAATTAACAGACAGAGCAGTGACTCAGCTTTCTCTAATCACACGGATACTTCTAAACTATCTTCAGCCGGCGAAAGTAAAGTTAAGCCGATCAGTAGAATTCGTAAAAGAAGTAGGGATAGCATCGATAATGCATCCAGTAGCAGTATCTCCCATGAATACCATCCTGTTACTTCTAAGAGAGTTGAAGAACTACGAAAGTCtcaaaaaattagaaaaattcagGACAATGATGACTCTGATTTCGAAGATAACACTACCTCTTTCTTCTTTGGTGGAACAGACTCTGATGAACCTCTTGAGTTTAAGTGTGACATCTGTTCTAAATCGTTTAAAACCTATCTTAGCATGATTTCTCATAAAAAATGTCACAGTCGTAGGGATAGGCAATCGGCTATGGCGGCATCCTCAACTACGGCTGTGAAACCAACTCCTGAAATTGTAAGTCAGATAGCTGATGTCAAGGATGAAGACAAATCTAAGTGTGAGACCTGcggaaaaacatttaaattaaaaattatgttaaagaGGCACTATGAAGTTTGTGGTAAACTTATTGATAAAGAACTTAAGATATCGTTAGAACCAATAGACGCGGCTCCcaatgaaaataaacttaattgcGAAACGTGTTTAGCTCCGTTTAAAACTATAGACAATTTAAGAAAACACATGAGAGTTGTGCATGCTGCAGTTCTTAAAATGGAAGAACCTCAGTCAGTGGAGAATAACAAAATATCCGTACCATGCTTCTATTGTCAAAAACCATTTGAAGATTTTTATACCCATTCTGCTCATTTTAAAGTTTGTCCAAACAGAGATGATACTCTTACTTTTGTCTGTACGGTATGTAATAAATCACTTGTGAAAAAGGCAAGCTACTTTAACCATTTGAAGGCTCATTTTTATCCATTGGCTCAGGTAAAGCCAAACAAATCCCCAATTCCAAAAGCATACACGTGCCgcttttgcaaaaaaaatttgcCAAATCAGGAATCCCTGATAAAACACCTTGCTGCCCACATGTCTCGTGTTGAAGAACCCGATGATGGTGGCGATGAAGAGTCAAGgaGTACCTTGGAGGATTCTGCTTCTTTACACTCGGAGTATAATAACTCTTCAATAATGACTGGTCCATTCAAATGTACAACGTGCGATAAAGGCTTCAAGTATAAAAAGGCTTTAGACACACACCAGATAGTAAAACACTCAAATGTAAGTGTTAAAGTTGAACCCCCAGATATATCCTCAGATCTGCTGAGTGAAACATTGAACGATCATAATGTTAATCAATCCGATTCTGAGTCCAGCAATGGTGAAGGCGATGACAACACGTGTGACATCTGTGAGAAACAGTTCTCCTACAAGCGCTTACTCATTAATCACAAGCGAACGAAACACAACATGAGCTCGGGAACAAAGAGAGCAAAGGTCAGCTTAAAGCAATGTCTAGTGCGCTGTTTAATATGTGACATTGAGATGAAAGTTGAAGCTATAAACGACCATAACATGAAGCACATATCCACAGGTGTAAAACCTCGCAATCTTTACACTTGCGTGGATTGCCCGGACCAGCAGTTTAAAAGCTGCAGTGCCCTAGCTACTCACATCAAAATGGTGCATAGATTGAATCAGCCGGCAACTAAACCGAAAACAAACATTCCTGTAGATCCTCCGGATATGGCGGATTTTTGTGAAGTCGTTGTGACAAAGGCGGAACCCCTGGACAGTGTCCAGAGTCACAACGACTTTGGGGAAGGCTCCGCCTATGCGACTGTTGATGGATTTACATGTCCCACCTGCAGCAAAGTTATGCCGACACTCATCTCCCTAAAGAGACATATGAACTGGCACACAAACGTcggaaataatattgaaaagaaATTGGAGTGTTTTGTATGCCAAGAGACATTTAGATTCCAGTGCCATTACAAAATTCATATGAAAGAACATTATAACGACCCAAACCTTGATCCTAAACACTTGACTTGCCCCATCTGTAATAGGAAAAGCAAGCATCTCCGTGCTGCGCAAATGCATATGAATTACCATAAACAGACTCGATTTAAGACCAAAGACTATGAGTGTTCCATTTGTAGGAAAGTCTTTCAAACTAGAAGAGTCTACCTGACTCATATGGCTATCCATTTCAAACGAGGGGAATCGGCAAACAACACAGTAATCGGATCTGTATTACCCACCACTGCTGATAAGACTGCCTTCGATGGAACTCATACTTGCAAAATATGCAATAAAGTATGCGAATCTGAAGCCTCGCTTAAATGCCACATGAGCTGGCATAATTCTAAAACTTTACTGTATGGTGCACGTCACGAGTGCGATATATGTCACTTACAATTCACCAACAAAGTTCGGCTCAAAGTCCATGAGCGATCTCACTTCGAAGACGAAAATGGTCCCTATAAGTGTCATATTTGCGGTAAAGGTTTTATTGCGGAAGATTATTTTCGAAGACATATTAAAGGACATAATTTCGACCATCAGTCACACAAAAAACGAATCGAAAAGCTCAGAAAGGGTAAAGTGAAGTGCCCAATCTGCACCAGATTCTATCCGGATGTGGTCAAACTGATACGTCACTTGCGCCGAACTCATCCCCAGAGCAAAATGATTAAAGAAGATCCGGACGCTCCGCCTCAAATGTACTACCCGTGCAAATTATGCGCCAAAGTGTTCCTTGACGAGCGCAGATTGCAACACCACGAAGAGGCGCATTTGCGTAAGCCCGaattttttaagtgtaaattCTGCGGAAAGAAGACCATTTCTCTGAAAAGCCatagaatccatattaaaggACATTTGACTCAGAAATACATAGACGAGCCACTGAAGTGTCAGCATTGTGATAAAACGTTCTCTCGCGGTTACGATCTTCATTATCACTTACGTGACTCACATGACATCGAAGAAACCTGGATCGCTGAGAGAAATAGTCAAAACCTTAATGGACCTCTTAAAGAACTACAATGCTCCATCTGTTTTAAAGTTCTTGCCAGTAAAGGAAACTATGAAAGACACATCGACTACCATAATTCCCTTCGATGCAACTACTGCTTCGATTACTTTAGCACTCTAAGGTTTTTGGAGGGACACTTAGCGTTCAGCTGCGAGAAGAAAAAGCTAATCGGCGATACAGAGATTTACCCAAGAAAGGTTAAATGTGAAATTTGTTATAAGGCATTCCATATACAAGTAAAGTTGGATTGCCATTTGCGAACTCAACATGGAGTAAAATCTTTCAAGGAGGCAACTGAAAGTAAGAAGGACCTCGTGTGTGACTATTGCTTCAGAGTTTTCGAGAATGAGTATGCATTGACCAACCATAAACTTTACCATAGAACTATTGGGTATTTTGGATGCTTATACTGTAACAGGAAGTTTAACACGTTGACGGTttacagaaaacataaaaatcacCACTTCGCACAACTTAACGTAGAGAATCCTACAAAGTGCGAGCACTGCGATAAAACATTTGTAGCTTTTAGAGAGTTCATATACCACATGCGGGACGAGCACGGCGATGATAAGGAGTGGGTCGTATACCCAAAGGAGTCAATGGAAGAAAAGTGCAACATTTgcaacaaaatgttttttaacttGCATCGGCATCTTTCTTATCACGAGGAAAATAGATGTAAAAAATGTGGGGAGTACTTTTACTCGcgaaccgattttgataatCACATTTGTCATATCGATAGTGAAGATGAGGTCGAAGGCAACGATGAGAATGATATTCGACCAAAATATGAGGAAtgcaaattttgttttaaaccgATAACTCagaaaactaaaaagaaacatgatcaATTACATAAAGGATCCGGTTCAATATCGTGTAGGTTCTGTATTCTTAAGTTCAAAACCATTGACGCTTTTAACATTCACGCGTTTTCTCATCGAAGTCGAAAGTATAAGAAACATCCTATACGATGTCGTATTTGTAAGGAGCAATTTGTTCAATATGGTCCTTTCATGCGCCACATGAAGTCTGTACACAAATCTACTAAGAAGATGCATTATAGAACTACAGTTAAGCCTGAAAAATGTGAAGTATGTGGCGATAATTTCCCAAATCTACACAACCACTATCGAGCTCATTTGTTAAATCAGTGTCAGCTATGTAGCAAATACTTCACTTCTAGTAAAGTGTTTTCACAACACACTTGCGATAAAGAAGATAGTGATCCTACGAAAGTGTTTACAAGCGATGCCAATCTTCCGTTACTTATTAATACCTATATTCCATTGGATGAAAAAGATGACGAAAAGTACTATGGATATGGTGAAGACGAAGATGAAGCAGATGATGAAAACGAATTGCCTCAAAATGAAGACAGTCAAAACTCAATAGATACGGCTGAAAGTTCACTGCATGAAATGGTACATGCGCCAATCATTTCTGATGTGCTCTCCTTGTATGAGAGAAAAGAGGTTATTAATGTCGAAGAGGTGGAAAAGAAAGATGATATTTGTATCGTTGAACTTACGGATGAAGACTCAGTTGGTTATCAAGAGAATCCTTCTTCAGTTATTACTATTGATGACGATTGA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFAVDNNLQLAEMVMECARVKIQEGDGLTDKICGECVQKLSSAHIFKQQCERSDQELRRNYVPPPGFISSTPPPINRQSSDSAFSNHTDTSKLSSAGESKVKPISRIRKRSRDSIDNASSSSISHEYHPVTSKRVEELRKSQKIRKIQDNDDSDFEDNTTSFFFGGTDSDEPLEFKCDICSKSFKTYLSMISHKKCHSRRDRQSAMAASSTTAVKPTPEIVSQIADVKDEDKSKCETCGKTFKLKIMLKRHYEVCGKLIDKELKISLEPIDAAPNENKLNCETCLAPFKTIDNLRKHMRVVHAAVLKMEEPQSVENNKISVPCFYCQKPFEDFYTHSAHFKVCPNRDDTLTFVCTVCNKSLVKKASYFNHLKAHFYPLAQVKPNKSPIPKAYTCRFCKKNLPNQESLIKHLAAHMSRVEEPDDGGDEESRSTLEDSASLHSEYNNSSIMTGPFKCTTCDKGFKYKKALDTHQIVKHSNVSVKVEPPDISSDLLSETLNDHNVNQSDSESSNGEGDDNTCDICEKQFSYKRLLINHKRTKHNMSSGTKRAKVSLKQCLVRCLICDIEMKVEAINDHNMKHISTGVKPRNLYTCVDCPDQQFKSCSALATHIKMVHRLNQPATKPKTNIPVDPPDMADFCEVVVTKAEPLDSVQSHNDFGEGSAYATVDGFTCPTCSKVMPTLISLKRHMNWHTNVGNNIEKKLECFVCQETFRFQCHYKIHMKEHYNDPNLDPKHLTCPICNRKSKHLRAAQMHMNYHKQTRFKTKDYECSICRKVFQTRRVYLTHMAIHFKRGESANNTVIGSVLPTTADKTAFDGTHTCKICNKVCESEASLKCHMSWHNSKTLLYGARHECDICHLQFTNKVRLKVHERSHFEDENGPYKCHICGKGFIAEDYFRRHIKGHNFDHQSHKKRIEKLRKGKVKCPICTRFYPDVVKLIRHLRRTHPQSKMIKEDPDAPPQMYYPCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKSHRIHIKGHLTQKYIDEPLKCQHCDKTFSRGYDLHYHLRDSHDIEETWIAERNSQNLNGPLKELQCSICFKVLASKGNYERHIDYHNSLRCNYCFDYFSTLRFLEGHLAFSCEKKKLIGDTEIYPRKVKCEICYKAFHIQVKLDCHLRTQHGVKSFKEATESKKDLVCDYCFRVFENEYALTNHKLYHRTIGYFGCLYCNRKFNTLTVYRKHKNHHFAQLNVENPTKCEHCDKTFVAFREFIYHMRDEHGDDKEWVVYPKESMEEKCNICNKMFFNLHRHLSYHEENRCKKCGEYFYSRTDFDNHICHIDSEDEVEGNDENDIRPKYEECKFCFKPITQKTKKKHDQLHKGSGSISCRFCILKFKTIDAFNIHAFSHRSRKYKKHPIRCRICKEQFVQYGPFMRHMKSVHKSTKKMHYRTTVKPEKCEVCGDNFPNLHNHYRAHLLNQCQLCSKYFTSSKVFSQHTCDKEDSDPTKVFTSDANLPLLINTYIPLDEKDDEKYYGYGEDEDEADDENELPQNEDSQNSIDTAESSLHEMVHAPIISDVLSLYERKEVINVEEVEKKDDICIVELTDEDSVGYQENPSSVITIDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01206751;
90% Identity
iTF_01206751;
80% Identity
-