Lari007191.1
Basic Information
- Insect
- Leptophobia aripa
- Gene Symbol
- -
- Assembly
- GCA_951799465.1
- Location
- OX637269.1:5301109-5308481[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.0005 0.031 14.8 2.5 1 23 195 217 195 217 0.98 2 30 0.00033 0.021 15.4 0.4 2 20 253 271 252 273 0.93 3 30 0.00026 0.016 15.7 0.1 2 23 299 321 298 321 0.95 4 30 1.7 1.1e+02 3.7 0.9 2 15 341 354 340 361 0.80 5 30 1.2e-05 0.00076 19.9 0.3 1 23 371 393 371 393 0.98 6 30 0.0041 0.26 11.9 2.1 1 23 410 432 410 432 0.96 7 30 1.6e-05 0.001 19.5 1.5 1 23 472 495 472 495 0.95 8 30 0.00015 0.0096 16.4 2.0 2 23 540 562 540 562 0.97 9 30 0.015 0.96 10.1 0.5 1 23 612 636 612 636 0.97 10 30 9.3e-05 0.0058 17.1 0.1 1 23 689 711 689 711 0.98 11 30 0.014 0.9 10.2 5.4 2 23 723 744 722 744 0.96 12 30 0.017 1.1 9.9 1.3 2 23 756 777 755 777 0.96 13 30 0.0096 0.6 10.8 0.4 1 23 787 809 787 809 0.96 14 30 0.6 37 5.1 6.2 1 23 838 860 838 860 0.96 15 30 0.0043 0.27 11.9 3.5 1 23 871 893 871 893 0.97 16 30 0.0007 0.044 14.3 0.2 1 23 901 923 901 923 0.97 17 30 0.00075 0.047 14.3 0.2 2 23 943 965 942 965 0.97 18 30 0.76 47 4.8 0.5 1 23 983 1005 983 1005 0.91 19 30 0.25 16 6.3 3.6 1 23 1012 1034 1012 1034 0.96 20 30 0.0027 0.17 12.5 2.8 2 23 1045 1067 1044 1067 0.95 21 30 0.0007 0.044 14.3 0.3 2 23 1090 1111 1089 1111 0.95 22 30 3.6 2.3e+02 2.7 3.7 2 23 1154 1176 1153 1176 0.94 23 30 0.0031 0.2 12.3 0.3 2 23 1192 1213 1191 1213 0.95 24 30 0.65 41 5.0 6.1 3 23 1221 1241 1221 1241 0.97 25 30 0.0072 0.45 11.2 1.1 2 23 1252 1274 1251 1274 0.95 26 30 1.2 78 4.1 4.6 2 23 1291 1309 1291 1309 0.92 27 30 8.4 5.3e+02 1.5 3.2 2 21 1313 1332 1313 1333 0.91 28 30 0.48 30 5.4 0.7 2 23 1380 1401 1379 1401 0.93 29 30 0.0026 0.16 12.5 0.3 2 23 1412 1434 1411 1434 0.96 30 30 0.64 40 5.0 3.3 2 19 1472 1489 1471 1489 0.91
Sequence Information
- Coding Sequence
- ATGGCACTTAAGCTTGGAAAATGCAGGCTATGCCTCAAGCTCGGAGACTTTTATTCAATCTTTGCTGTGGATAATGATCTACAGCTTGCTGACATGGTCATGGAATGTGCACGAGTTAAAATACAAGAAGGAGATGGTTTAACAGACAAGATATGCGGAGAATGCGTACAAAAATTGAGTAGCGCGCATATTTTCAAACAACAATGTGAAAGATCCGACCAAGAACTACGTCGAAATTATGTTCCGCCTCCAGGATTTATTTCTTCGACACCACCACCAATTAACAGACAGAGCAGTGACTCTGCTTTCTCAAACCACACATATACTTCTAAACCGTCTTCAGTCAGCGAAAGTAAAGTTACACCAAGTACTAGAATTCGTAAAAGAAGTAGAGATAGCATTGACAATGTATCAAATAACAGTATTTCAAATGAATATCGTCCCGTTAGTACGAAGAGAGTTGAAGAACTGCGAAAGTCTAAAAAAAAGCGAAAAATGCAGGAGGAGAACGATGACTCTGATTTTGAAGAGAACACAACTTTCTTTCTCTCTGGTGGAACGGACTCTGACGAACCTATCGAGTTTAAGTGTGACATCTGttctaaaacatttaaaagctatattaGTATGATTTCACATAAAAAATCTCACAATCGTAAAGATAGACAACACCAACTTCCTGTGGCCACTTTAACTGTCGAAGCACCGCTTGAAAACGTTACCCAGGTGGCTGATGTCAAAGATGAAAACAAATCCAGTTGTGAGAAATGCggaaaaacttttaaattaaaaattatgttaaagaGGCATTATGAAGTTTGTGGTACACGTATAGACAaagaacttaaaatatctttagaaCCAATAGACGCTGCACCCAATGAAAATGTCCTGAATTGTGAAATATGTTTAGctccatttaaaaatatcgacAATTTAAGAAAGCACATGAAAGTTGTACATGCCGCAGTACTTAAAATGGATGAACCTGCATCAGTGGGGATGAACGAGATATGTGTACCATGCTTCTATTGTCAAAAACCATTTACAGATTTCTATACTCACTCGGCTCATTTTAAAGTATGTCCAAAGAGAGACGACACTCTTACTTATGTCTGTACGGTGTGTAATAAACCATTTGTAAAGAAGGCGAGTTACATTAACCATTTGAGAGTTCATTTCTTTCCATTGAAAAATGCGCAGACAAACAAATCCCCGCTGCCAAAATACACATGCCGCTTTTGTAAGAAAAACTGTGACGACCAGGAATCCCTGATAAAACATCTCGCTGCGCACATGTCTAGAATTGAAGAACCAGACGATGGTGGCGATGAAGAGTCCAGGAGTACTTTAGATGACTCTGCATCTTTGCTCTCTCTATACTCGGACTATGCTTCAATAATTAAAGGACCGTTCAATTGTACAATGTGTGATAAATCCTTTAAGTACAAAAAGGCTCTAGAAACGCATCAGGCAGTAAAACATTCAGATGTGAGTGTTAAACATGAACCTTCAAATGTAAGCTCAGATCTGCTAAGTGAAACGTTGAATGTTACCAATGTCAATCACTCTGTTGTCTCCGGGTCTGACACTAGCGATGATGAAGGAGACGACAATACATGTGATATATGTGAGAAACAGTTCTCGTACAAGCGTTTGCTGATTAATCACAAGCGAACGAAACACAATATCAGCTCGGGAACGAAGAGAGCAAAGATCTGTTTAAAAGAGTGTCTGGTGCGGTGTTTAATATGTGACATTGAGATGAAAGTTGGTGCTGTCAATGAGCATAATGTAAAGCACATATCCACGAATGTAAAGCCACGCAATCTTTACACTTGCGTGGAATGCCCGGATCAGCAGTTTAAGAGTTGCAGTGCACTCGCCAACCACATTAAGATGGTGCATAGATTGAATCAACCGGCGACGAAAACGAATATGTCTCTGGATCCCCCAGATTTGGCGGATTTTTGTGAAGTCGTTGTGACAAAAGCGGAGCCCGCGGACAGTGTCCAGAGTCACAACGACATCGGCGAGGGTTCCGCTTATGCGACTGTCAATGGATTCACGTGCCCCACCTGCGGCAAAGTTATGCCGACACTCATCTCCTTAAAGAGGCATATGAACTGGCACACCAACGTCGGGAATAATATGGAAAAGAAGTTGGAGTGTTTTGTATGCCAAGAGACATTTAGATTCCAGTGCCATTACAAGATTCATATGAAAGAACATTATAACGACACTAACATCGATCCAAAACATTTAACTTGCCCTATCTGCAAAAGAAAAAGCAAACATCTTCGCGCTGCGCAAGCACACATGAATTACCATAAACAAACTCGTTTTAAGACCAAAGACTACGAGTGTTCGATTTGCAAGAAAGTCTTTCAAGCAAGAAAGGTGTATCTGACTCATATGGCCATCCACTTTAAACGAGGAGAATCGGCTAATAATACAGTTATCGGGTCTGCCTTACCCACCACTGCTGATAAGACGGCCTTCGATGGAACACATACTTGCAAAACGTGCAATAAAGTATGCGAATCTGAAGCGTCTCTGAAGTGCCATATGAGCTGGCATAACTCTAAAACTTTACTGTACGGCGCACGTCACGAATGCACAATTTGTCACCTACAATTCACCAACAAAGGCCGGCTTAAACTCCATGAGCGGGCCCACTTCGAAGACGAAAATGGTCCGTTTAAGTGTGATATTTGCGGAAAAGGTTATATTGCAGAAGAGTATTTCCGAAGACATGTCAAAGGACACAATTTCGATCATCAGTCGCACAAAAAACGAATCGAAAAGCTCAGAAAAGGCAAAGTGAAATGCCCAATATGCACAAGGTTCTATCCCGATGTGGTTAAGCTGATACGCCACTTGCGCAGAACTCATCCTCAGAGCAAAATGATCAAAGAGGATCCGGACGCGCCGCCTCAAATGTACTACCCGTGCAAATTGTGCGCCAAAGTGTTCCTTGACGAGCGCCGATTGCAACACCATGAAGAAGCTCATTTGCGCAAACCGGAATTCTTCAAGTGCAAATTTTGCGGAAAGAAGACCATTTCATTAAAAAGCCATAGAGTCCATATCAAAGGTCATTTGACTCAGAAATACATTCAGGAGCCGCTTAAGTGCCAGCATTGTGAAGAAACGTTCTCTCGCGGTTATGATCTTCATTATCACTTACGTGATGCACACCAAATCGAGGAGACTTGGATCGCTGAGAGACATAGTCAAAACCTCACTGGACCTCTTAAAGAGCTACAGTGTTCGATTTGTTTCAAAGTTCTGGCCAGTAAAGGAAACTTTGAAAGGCATATTGACTACCATAACTCCCTTCGATGCAACTACTGCTTTGATTACTTCAGCACGGTAAGGTTCTTGGAGGGGCACTTGGCATTCAGTTGCGAGAAGAAAAAACTTATCGGGGATACAGAGCTTTATCCAAGAAAGGTTAAGTGTGAAATTTGTTACAAGGCATTTCATTTACAAGTGAAGTTGGATTGCCATCTGCGTACTCGTCATGAAATCAAATCTTTCAAAGAAGTTACTGAAGGAAAAAAGGACCTCGTTTGCGATTATTGCTTCAGAGTGTTTGAGAATGAATATGCATTGTCCAACCACAAACTTTATCATAGAACTGTTGGTTATCTTGGATGCTTATACTGTAGCAAAAAGTTCAACACCATGACATTATACAGAAAGCATAAAAATCACCACTTTGCCCAACTTAACGTGGATAGCCCTACAAAGTGCGAGCATTGCGATGAGACATTCGTGGCGTTCAGAGAGTTCATATATCACATGCGGGATGAGCATGGCGATAACAAGGAGTGGGTTGTATACCCGAAGGAGTCAGTCGAAGAGAAATGCACCATTtgcaacaaaatgtttttcaacCTGCATCGGCATCTTTCCTATCACGAGGAAAATAGATGTAAAAAATGTGGAGAGTACTTTCTTTCgcgaaccgattttgacaaccaCATTTGTCATATCGACAGTGATGATGAGGTGGACAACACTGAAAACGATATTCGGCCAAAGTATGAGGAGTGCcggttttgttttaaaccaGTAACGGATAAAACGAAAAAGAAACATGATCAGTTACATAAAGGATCCGGATCTATATCTTGTCGGTTCTGCACTCTcaagtttaaaacaattgacgCATTCAACATTCATGCGTTTTCTCATCGGAGTCggaaatataagaataatccTATTAGGTGTCGCTTTTGTGGAGAGCAGTTTGTTCAATATGGTCCATTCATGCGTCACATGAAGTCGGCACACAAATCCACTAAAAAGATGCACTATAGAACGACGGTTATGCCCGAAAAATGTGAGGTGTGCGGCGATGATTTTCCGAACCTACACAATCACTATAGAGCTCATTTGTTAAATCAATGCCAGCAATGTCACAAATTCTTCACTTCCAGTAAAGTGTTTTCTCAACACGATTGCGACAAAGAGGACACTGACCCTTCGAAGGTGTATACGAGCGATGCCAACCTTCCCTTACTCATAAACACGTATATTCCATTAGATGAAAAGGATGATGAAAAGTACTATGGATACGAAGAGGATGAAGTGAATGGTGAAAAAGAATTGCCTCAAAATGAAGATAGTCAAAATTCAATCGACACAGCCGATAGCTCCCTTCATGATATGGTGCACGTACCGATAATCTCGGACGTGCTTTCTTTGTATGAGAGAAAAGAGGATATCAATGTTGAAGAGATGAAAAAGAAAGATAATAATATCGTAGAACTAACTGACGAAGACTCTGTTGGTTTTCAAGAGAAGCCGTATGAAGTTATTACTATAGATGATGatgattga
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFAVDNDLQLADMVMECARVKIQEGDGLTDKICGECVQKLSSAHIFKQQCERSDQELRRNYVPPPGFISSTPPPINRQSSDSAFSNHTYTSKPSSVSESKVTPSTRIRKRSRDSIDNVSNNSISNEYRPVSTKRVEELRKSKKKRKMQEENDDSDFEENTTFFLSGGTDSDEPIEFKCDICSKTFKSYISMISHKKSHNRKDRQHQLPVATLTVEAPLENVTQVADVKDENKSSCEKCGKTFKLKIMLKRHYEVCGTRIDKELKISLEPIDAAPNENVLNCEICLAPFKNIDNLRKHMKVVHAAVLKMDEPASVGMNEICVPCFYCQKPFTDFYTHSAHFKVCPKRDDTLTYVCTVCNKPFVKKASYINHLRVHFFPLKNAQTNKSPLPKYTCRFCKKNCDDQESLIKHLAAHMSRIEEPDDGGDEESRSTLDDSASLLSLYSDYASIIKGPFNCTMCDKSFKYKKALETHQAVKHSDVSVKHEPSNVSSDLLSETLNVTNVNHSVVSGSDTSDDEGDDNTCDICEKQFSYKRLLINHKRTKHNISSGTKRAKICLKECLVRCLICDIEMKVGAVNEHNVKHISTNVKPRNLYTCVECPDQQFKSCSALANHIKMVHRLNQPATKTNMSLDPPDLADFCEVVVTKAEPADSVQSHNDIGEGSAYATVNGFTCPTCGKVMPTLISLKRHMNWHTNVGNNMEKKLECFVCQETFRFQCHYKIHMKEHYNDTNIDPKHLTCPICKRKSKHLRAAQAHMNYHKQTRFKTKDYECSICKKVFQARKVYLTHMAIHFKRGESANNTVIGSALPTTADKTAFDGTHTCKTCNKVCESEASLKCHMSWHNSKTLLYGARHECTICHLQFTNKGRLKLHERAHFEDENGPFKCDICGKGYIAEEYFRRHVKGHNFDHQSHKKRIEKLRKGKVKCPICTRFYPDVVKLIRHLRRTHPQSKMIKEDPDAPPQMYYPCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKSHRVHIKGHLTQKYIQEPLKCQHCEETFSRGYDLHYHLRDAHQIEETWIAERHSQNLTGPLKELQCSICFKVLASKGNFERHIDYHNSLRCNYCFDYFSTVRFLEGHLAFSCEKKKLIGDTELYPRKVKCEICYKAFHLQVKLDCHLRTRHEIKSFKEVTEGKKDLVCDYCFRVFENEYALSNHKLYHRTVGYLGCLYCSKKFNTMTLYRKHKNHHFAQLNVDSPTKCEHCDETFVAFREFIYHMRDEHGDNKEWVVYPKESVEEKCTICNKMFFNLHRHLSYHEENRCKKCGEYFLSRTDFDNHICHIDSDDEVDNTENDIRPKYEECRFCFKPVTDKTKKKHDQLHKGSGSISCRFCTLKFKTIDAFNIHAFSHRSRKYKNNPIRCRFCGEQFVQYGPFMRHMKSAHKSTKKMHYRTTVMPEKCEVCGDDFPNLHNHYRAHLLNQCQQCHKFFTSSKVFSQHDCDKEDTDPSKVYTSDANLPLLINTYIPLDEKDDEKYYGYEEDEVNGEKELPQNEDSQNSIDTADSSLHDMVHVPIISDVLSLYERKEDINVEEMKKKDNNIVELTDEDSVGFQEKPYEVITIDDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01206751;
- 90% Identity
- -
- 80% Identity
- -