Pmad010942.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pieris macdunnoughii
Gene Symbol
-
Assembly
GCA_905332375.1
Location
CAJOBZ010000034.1:1884525-1897447[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.055 3.4 8.2 4.8 1 21 194 214 194 216 0.92
2 29 9.9e-05 0.0061 16.9 0.3 2 20 253 271 252 273 0.94
3 29 0.00024 0.015 15.6 0.2 2 23 299 321 298 321 0.95
4 29 4.7 2.9e+02 2.1 0.7 2 14 341 353 340 361 0.79
5 29 0.00012 0.0071 16.6 1.7 1 23 448 471 448 471 0.97
6 29 0.00013 0.0082 16.4 2.0 2 23 513 535 513 535 0.97
7 29 0.012 0.74 10.3 0.6 1 23 585 609 585 609 0.97
8 29 0.00066 0.041 14.3 0.3 1 23 664 686 664 686 0.98
9 29 0.013 0.78 10.2 5.4 2 23 698 719 697 719 0.96
10 29 0.0081 0.5 10.8 1.0 2 23 731 752 730 752 0.96
11 29 0.00063 0.039 14.3 0.6 1 23 762 784 762 784 0.98
12 29 0.11 6.8 7.3 5.3 1 23 813 835 813 835 0.96
13 29 0.0017 0.1 13.0 3.6 1 23 846 868 846 868 0.97
14 29 1.5e-05 0.00092 19.4 1.2 1 23 876 898 876 898 0.98
15 29 0.00066 0.04 14.3 0.2 2 23 918 940 917 940 0.97
16 29 0.66 41 4.8 0.5 1 23 958 980 958 980 0.91
17 29 0.26 16 6.1 3.6 1 23 987 1009 987 1009 0.96
18 29 0.00045 0.028 14.8 4.6 2 23 1020 1042 1019 1042 0.95
19 29 0.00089 0.055 13.8 0.2 2 23 1065 1086 1064 1086 0.95
20 29 8.4 5.2e+02 1.3 0.3 2 20 1090 1108 1089 1109 0.82
21 29 3.6 2.2e+02 2.5 3.1 2 23 1129 1151 1128 1151 0.93
22 29 0.001 0.062 13.7 0.4 2 23 1167 1188 1166 1188 0.95
23 29 0.48 29 5.3 4.6 3 23 1196 1216 1194 1216 0.96
24 29 0.0019 0.11 12.8 1.8 2 23 1227 1249 1226 1249 0.95
25 29 0.79 49 4.6 4.5 2 23 1266 1284 1266 1284 0.92
26 29 0.19 12 6.5 3.6 2 21 1288 1307 1288 1308 0.94
27 29 0.008 0.49 10.9 0.3 2 23 1388 1410 1387 1410 0.95
28 29 9.2 5.7e+02 1.2 0.8 2 23 1426 1444 1425 1444 0.68
29 29 1.3 83 3.8 3.0 2 20 1448 1466 1447 1468 0.92

Sequence Information

Coding Sequence
ATGGCTCTTAAGCTTGGAAAATGCAGGCTTTGCCTCAAACTTGGGGATTTCTACTCAATCTTTGCCGTCGATAATAATTTGCAACTCGCCGAAATGGTCATGGAATGTGCACGGGTTAAAatacaaGAAGGGGATGGTCTTACAGATAAAATATGTGGAGAGTGCGTACAAAAATTGAGCAGTGCGCATATATTTAAGCAACAATGTGAAAGATCGGACCAAGAATTACGAAGAAATTATGTTCCACCGCCAGGTTTTATTTCATCAACACCACCGCCAATTAACAGGCAGAGCAGTGACTCAGCTTTCTCTAATCACACGGATACTTCTAAACTATCTTCAGCCGGCGAAAGTAAAGTTAAGCCGATCAGTAGAATTCGTAAAAGAAGTAGGGATAGCATCGATAATGCATCCAGTAGCAGTATCTCCCATGAATACCATCCTGTTACTTCTAAGAGAGTTGAAGAACTACGAAAgtctaaaaaaattagaaaaattcaGGACAATGATGACTCTGATTTCGAAGATAACACTACCTCTTTCTTCTTTGGTGGAACAGACTCTGATGAACCTCTTGAGTTTAAGTGTGACATCTGTTCTAAATCGTTTAAAACCTATCTTAGCATGATTTCTCATAAAAAATGTCACAGTCGTAGGGATAGGCAATCGGCTATGGCGGCATCCTCAACTACGGCTGTGAAACCAACTCCTGAAATTGTAACTCAGATAGCTGATGTCAAGGATGAAGACAAATCTAAGTGTGAGATCTGtggaaaaacatttaaattaaaaattatgttaaagcGGCACTATGAAGTTTGTGGTAAACTTATTGATAAAGAACTTAAGATATCGTTAGAACCAATAGACGCGGCCCCCAATGAAAGTAAACTTAATTGCGAAACGTGTTTAGCTCCGTTTAAAACTATAGACAATTTAAGAAAACACATGAGAGTTGTGCATGCTGCAGTTCTTAAAATGGAAGAACCTCAGTCAGTGGAGAATAACAAAATAGCCGTACCATGCTTCTATTGTCAAAAACCATTTGAAGATTTTTATACCCATTCTGCTCATTTTAAAGTTTGTCCAAACAGAGATGATACTCTTACTTTTGTCTGTACGGTATGTAAAGCCAAACAAATCCCCAATTCCAAAAGCATACACGTGCCgcttttgcaaaaaaatttgCCAAATCAGGAATCCCTGATAAAACACCTTGCTGCGCACATGTCTCGTGTTGAAGAACCCGATGATGGTGGCGATGAAGAGTCTAGgaGTACCTTGGAGGATTCTGCTTCTTTACACTCAGAGTATAATAACTCTTCAATAATGACTGGTCCATTCAAATGTACAACGTGCGATAAAGGCTTCAAGTATAAAAAGGCTTTAGACACACACCAGATAGTAAAACACTCAAATGTAAGTGTTAAAGTTGAACCCCCAGATATATCCTCAGATCTGCTGAGTGAAACATTGAACGATCATAATGTTAATCAATCCGATTCTGAGTCCAGCAATGGTGAAGGCGATGACAACACGTGTGACATCTGTGAGAAACAGTTCTCCTACAAGCGCTTACTCATTAATCACAAGCGAACGAAACACAACATGAGCTCGGGAACAAAGAGAGCAAAGGTCAGCTTAAAGCAATGTCTAGTGCGCTGTTTAATATGTGACATTGAGATGAAAGTTGAAGCTATAAACGACCATAACGTGAAGCACATATCCACAGGTGTAAAACCTCGCAATCTTTACACTTGCGTGGATTGCCCGGACCAGCAGTTTAAAAGCTGCAGTGCCCTAGCTACTCACATCAAAATGGTGCATAGATTGAATCAACCGGCAACTAAACCGAAAACAAACATTCCTGTAGATCCTCCGGATATGGCGGATTTTTGTGAAGTCGTTGTGACAAAGGCGGAACCCCTGGACAGTGTCCAGAGTCACAACGACTTTGGGGAAGGCTCCGCCTATGCGACTGTTGATGGATTTACATGTCCCACCTGCAGCAAAGTAATGCCGACACTCATCTCCCTAAAGAGACATATGAACTGGCACACAAACGTCggaaataatattgaaaagaaGTTGGAGTGTTTTGTATGCCAAGAGACATTTAGATTCCAGTGCCATTACAAAATTCATATGAAAGAACATTATAACGACCCAAACCTTGATCCTAAACACTTGACTTGCCCCATTTGTAATAGGAAAAGCAAGCATCTTCGTGCTGCGCAAGCGCATATGAATTACCATAAACAGACTCGATTTAAGACCAAAGACTATGAGTGTTCCATTTGTAAGAAAGTCTTTCAAACTAGAAGAGTCTACCTGACTCATATGGCTATCCACTTCAAACGAGGGGAATCGGCAAACAACACAGTAATCGGATCTGTAATACCCACCACTGCTGATAAGACTGCCTTCGATGGAACCCATACTTGCAAAATATGCAATAAAGTATGCGAATCTGAAGCATCGCTTAAATGCCACATGAGCTGGCATAATTCTAAAACTTTACTGTATGGTGCACGTCACGAGTGCGATATATGTCACTTACAATTCACCAACAAAGTTCGGCTCAAAGTCCATGAGCGCTCTCACTTCGAAGACGAAAATGGTCCCTATAAGTGTCATATTTGCGGAAAAGGTTTTATTGCGGAAGATTATTTTCGAAGACATATTAAAGGACATAATTTCGACCATCAGTCACACAAAAAACGAATCGAAAAGCTCAGAAAGGGTAAAGTGAAGTGCCCAATCTGCACCAGATTCTATCCGGATGTGGTCAAACTGATACGTCACTTGCGCCGAACTCATCCCCAGAGCAAAATGATTAAAGAAGATCCGGACGCTCCGCCTCAAATGTACTACCCGTGCAAATTATGCGCCAAAGTGTTCCTTGACGAGCGCAGATTGCAACACCACGAAGAGGCGCATTTGCGTAAGCCCGaattttttaagtgtaaattCTGCGGAAAGAAGACCATTTCTCTGAAAAGCCATAGAATCCATATTAAAGGACATTTGACTCAGAAATACATAGACGAGCCACTGAAGTGTCAGCATTGTGATAAAACGTTCTCTCGCGGTTACGATCTTCATTATCACTTACGTGACTCACATAACATCGAAGAAACCTGGATCGCTGAGAGAAATAGTCAAAACCTTAATGGACCTCTTAAAGAACTACAATGCTCCATCTGTTTTAAAGTTCTTGCCAGTAAAGGAAACTATGAAAGACACATCGACTACCATAATTCCCTTCGATGCAACTACTGCTTCGATTACTTTAGCACTCTAAGGTTTTTGGAGGGACACTTAGCGTTCAGCTGCGAGAAGAAAAAGCTAATCGGCGATACAGAGATTTACCCAAGAAAGGTTAAATGTGAAATTTGTTATAAGGCATTCCATATACAAGTAAAGTTGGATTGCCATTTGCGAACTCAACATGGAGTAAAATCTTTCAAGGAGGCAACTGAAAGTAAGAAGGACCTCGTGTGTGACTATTGCTTTAGAGTTTTCGAGAATGAGTATGCATTGACTAACCATAAACTTTACCATAGAACTATTGGGTATTTTGGATGCTTATACTGTAACAGGAAGTTTAACACCTTGACGGTTtacagaaaacataaaaatcacCACTTCGCACAACTTAACGTAGAGAATCCTACAAAGTGCGAGCACTGCGATAAAACATTTGTAGCTTTCAGAGAGTTCATATACCACATGCGGGACGAGCACGGCGATGATAAGGAGTGGGTCGTATACCCAAAGGAGTCAATGGAAGAAAAGTGCAACATTTGcaacaaaatgttttttaacttGCATCGGCATCTTTCTTATCACGAGGAAAATAGATGTAAAAAATGTGGGGAGTACTTTTACTCGCGAACCGATTTTGATAATCACATTTGTCATATCGATAGTGAAGATGAGGTCGACGGCAACGTTGAGAATGATATTCGACCAAAATATGAGGAAtgcaaattttgttttaaaccgATAACTCAGAAAActaaaaagaaacatgatCAATTACATAAAGGATCCGGTTCAATATCGTGTAGGTTCTGTATTCTTAAGTTCAAAACCATTGACGCTTTCAACATTCACGCGTTTTCTCATCGAAGTCGAAAGTATAAGAAACATCCTATACGATGTCGTATTTGTAAGGAGCAATTTGTTCAATATGGTCCTTTCATGCGCCACATGAAGGCTGTACACAAATCTACTAAGAAGATGCATTATAGAACTACAGTTAAGCCTGAAAAATGTGAAGTATGTGGCGATAATTTCCCGAATCTACACAACCACTATCGAGCTCATTTGTTAAATCAGTGTCAGCTATGTAGCAAATACTTCACTTCTAGTAAAGTGTTTTCACAACACACGTGCGATAAAGAAGATAGTGATCCTATGAAAGTGTTTACAAGCGATGCCAATCTTCCGTTACTTATTAATACCTATATTCCATTGGATGAAAAAGATGACGAAAAGTACTATGGATATGGTGAAGACGAAGATGAAGCAGATGATGAAAACGAATTGCCCCAAAATGAAGACAGTCAAAACTCAATAGATACGGCTGAAAGTTCACTGCACGAGATGGTACATGCGCCAATCATTTCTGATGTGCTCTCCTTGTATGAGAGAAAAGAGGTTATTAATGTCGAAGAGGTGGAAAAGAAAGATGATATTTGTATCGTTGAACTTACGGATGAAGACTCAGTTGGTTATCAAGAGAATCCTTCTTCAGTTATTACTATTGATGACGATTGA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFAVDNNLQLAEMVMECARVKIQEGDGLTDKICGECVQKLSSAHIFKQQCERSDQELRRNYVPPPGFISSTPPPINRQSSDSAFSNHTDTSKLSSAGESKVKPISRIRKRSRDSIDNASSSSISHEYHPVTSKRVEELRKSKKIRKIQDNDDSDFEDNTTSFFFGGTDSDEPLEFKCDICSKSFKTYLSMISHKKCHSRRDRQSAMAASSTTAVKPTPEIVTQIADVKDEDKSKCEICGKTFKLKIMLKRHYEVCGKLIDKELKISLEPIDAAPNESKLNCETCLAPFKTIDNLRKHMRVVHAAVLKMEEPQSVENNKIAVPCFYCQKPFEDFYTHSAHFKVCPNRDDTLTFVCTVCKAKQIPNSKSIHVPLLQKNLPNQESLIKHLAAHMSRVEEPDDGGDEESRSTLEDSASLHSEYNNSSIMTGPFKCTTCDKGFKYKKALDTHQIVKHSNVSVKVEPPDISSDLLSETLNDHNVNQSDSESSNGEGDDNTCDICEKQFSYKRLLINHKRTKHNMSSGTKRAKVSLKQCLVRCLICDIEMKVEAINDHNVKHISTGVKPRNLYTCVDCPDQQFKSCSALATHIKMVHRLNQPATKPKTNIPVDPPDMADFCEVVVTKAEPLDSVQSHNDFGEGSAYATVDGFTCPTCSKVMPTLISLKRHMNWHTNVGNNIEKKLECFVCQETFRFQCHYKIHMKEHYNDPNLDPKHLTCPICNRKSKHLRAAQAHMNYHKQTRFKTKDYECSICKKVFQTRRVYLTHMAIHFKRGESANNTVIGSVIPTTADKTAFDGTHTCKICNKVCESEASLKCHMSWHNSKTLLYGARHECDICHLQFTNKVRLKVHERSHFEDENGPYKCHICGKGFIAEDYFRRHIKGHNFDHQSHKKRIEKLRKGKVKCPICTRFYPDVVKLIRHLRRTHPQSKMIKEDPDAPPQMYYPCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKSHRIHIKGHLTQKYIDEPLKCQHCDKTFSRGYDLHYHLRDSHNIEETWIAERNSQNLNGPLKELQCSICFKVLASKGNYERHIDYHNSLRCNYCFDYFSTLRFLEGHLAFSCEKKKLIGDTEIYPRKVKCEICYKAFHIQVKLDCHLRTQHGVKSFKEATESKKDLVCDYCFRVFENEYALTNHKLYHRTIGYFGCLYCNRKFNTLTVYRKHKNHHFAQLNVENPTKCEHCDKTFVAFREFIYHMRDEHGDDKEWVVYPKESMEEKCNICNKMFFNLHRHLSYHEENRCKKCGEYFYSRTDFDNHICHIDSEDEVDGNVENDIRPKYEECKFCFKPITQKTKKKHDQLHKGSGSISCRFCILKFKTIDAFNIHAFSHRSRKYKKHPIRCRICKEQFVQYGPFMRHMKAVHKSTKKMHYRTTVKPEKCEVCGDNFPNLHNHYRAHLLNQCQLCSKYFTSSKVFSQHTCDKEDSDPMKVFTSDANLPLLINTYIPLDEKDDEKYYGYGEDEDEADDENELPQNEDSQNSIDTAESSLHEMVHAPIISDVLSLYERKEVINVEEVEKKDDICIVELTDEDSVGYQENPSSVITIDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01206751;
90% Identity
iTF_01206751;
80% Identity
-