Pate008048.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- KRBA2
- Assembly
- GCA_963170745.1
- Location
- OY720660.1:11449346-11452225[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00057 0.059 14.3 3.1 2 23 388 409 387 409 0.96 2 15 1.1 1.2e+02 3.9 4.9 1 23 415 438 415 438 0.97 3 15 2.9e-05 0.003 18.3 0.8 2 23 514 535 513 535 0.97 4 15 6.2e-06 0.00065 20.4 2.3 1 23 541 563 541 563 0.98 5 15 0.00019 0.02 15.7 0.3 1 23 569 591 569 591 0.98 6 15 1.1e-06 0.00011 22.9 1.4 1 23 607 629 607 629 0.98 7 15 7e-06 0.00073 20.3 1.2 3 23 637 657 635 657 0.98 8 15 1.2e-05 0.0013 19.5 2.2 1 23 663 685 663 685 0.98 9 15 0.00085 0.089 13.7 0.2 1 23 691 713 691 713 0.99 10 15 1.9e-05 0.002 18.9 0.2 1 23 719 742 719 742 0.92 11 15 3.1e-05 0.0033 18.2 1.5 1 23 748 770 748 770 0.98 12 15 8.3e-05 0.0086 16.9 4.6 1 23 776 798 776 798 0.98 13 15 6.3e-06 0.00066 20.4 0.2 1 23 804 827 804 827 0.96 14 15 1.4e-05 0.0015 19.3 0.9 1 23 833 855 833 855 0.96 15 15 3.7e-06 0.00039 21.1 4.5 1 23 861 883 861 883 0.99
Sequence Information
- Coding Sequence
- ATGAGCACAGCATCATCAAACAAAATCGAATCTCAGTTCGTATCTGTGAAACAAGAAACAGAGTGTCTCGAGGGAAACTTATGTCCAGAGATTGATTCAAGTCAAACTCAAACTAATTCAAACGAATCATTCGTCGAGAGaaagattgatgaaaataaacaatCCACACCATTCATGAATGATGGAACTGCTATCATCAGTCTGGACTCCGAGACAATGAATTGTATTGTCGATGCCGATTCAAATcaagttgaagaaaatgaagatacCATAACTGAAAGGATAAATCCTAGATGTCAAGTTGACATTATTGATATGAGGAATGAGGAATTTATGGATTACAAATATATCCTTGTTTACGAAGATCAGACATCAAAGTTTGTCATACTGCGTCCATTAAGAAGCAAAGATGCGAAAGATGTAGCTACTGAATTATTTGATATCTTGGCAATTATAGGAGCCCCTAGAGTCCTTCAGAGTCAAAACGGTAGAAAGTTTGCCAGTGAAATTGTTCATGAATTGAGATCGTTATGGTCAGATCTCATCATGGTACATGGAGACGCTGTAATTTCATCCTCAAGTATTAAACGAGACTTTAAACAGCTTTTGAAAACTTGGCTTATTGAAAATCCTGGTAAAACGTGGTGTGAGGGGCTCAGATTTGttcaaattaatgaaaatacaaattttcgattagCAGAGTTTGATAAAACTCCGCATGAATTGATATTCCTAAATAATGATAGTGACCACCTACAAATATTTAGTATTACAAAAGATGCTGTTAACACAATATGGCGAGAAGAAGACTGGCAGAAAGTGattaacaataaaaaaaaaaaacagatggGCAATGAAACTAGCAATTCGAAATTCtttgatgataattatagtaaAAAACTTATAAGCATATACGATCCGGTTAGCCAGATTGATGAGGATATTTCTATCAAAGAAGATGAAAGCGACATCCAGGAAAGCGGGTTTGAGAATCGAACTAGACAATCGTcgaaaaattttaataattccACTGGATTTAAGTTtgtgaatgtgaaaaatgagagtccattgaatgtttCGCAACTAGACGATTCACAATCAGAAACTGAAGTGAATGAGAATAGCCAAACTAAAACAAGGCCGCGTGACAAATATCCGTTGAAGTGCAAAATTTGTCAGAAAAGATACATGAAGTTAGGACATCTTAAAAATCATCTTAAAGCACACACAAAAGATAATGGTTTCGAGTGTACAATTTGCTGTAAGAAGTTCCGACTATTGACAATTTACGAAAAACACATGCGCCGGTTTCATAACTCTGACGAGAAGACTCCTTCCGATATAAAAGGGGGTCTCAGAACTGATACAGAGGAGAATTTCAAGCTCAAAAGACTCATGGATGCTGATTTGAGAGCTGAAGATACTGATGCTTTACAAAACAGAAAAGCAATCAAAGTTGCAAAACGTTTAACTCGTCCAGGCagtaaaaaatcatcaaaagaAAACCGAGCTACCAGATTAAACGGCACGCCTTTATTAGAGTGTAGCTATTGCCAGCAGAAGTTTGACTTTCCGAGCGTTTTGAAAAGGCACATAAGATCGCATACTAATGAAAGACCATATGTTTGTCAGATATGCAATAAAAGTTTCAAGCAATTAGGGCACCTTAGTCAGCACTCTTTAACGCACACAGACTATCGTTCCTTTCAATGTGCAACGTGTGGAATTAAGTTTGAATCATTAGACAGTTTAAAGATTCATTCACAGTCGCATCGAGGAGATACAGTAATGTATAGACCAAAAGAAGTATATCGTCTTTTCGAATGTGATAATTGCAAGAAAGTATTTACAACTAAAAGCGTGCTGGAAAGGCACATATTTACACACACGCACGAACGACAATTTGGTTGTAAAGTGTGCGGTAAAAGATTTAAACAAGCAGGTCACGTTAAATCGCATATGCTGGTACATACAGGggaacgaaaattcgaatgtaaAGTTTGTTCTAAAAGATTTAGCCTTTCGAATTCTCTGAAAAAACACATGTACATTCACAATGGTGAGAAACCTTATCAATGCGATGTATGCGGCGCTCGTTTCCTAGAGAAACGGAACTTGAATGGTCATTTAATGACTCACACAAACGAGCGACCTTTTTCTTGTAATATTTGTGGCAAGAGATATACTCTCGCCGATACTCTGAGACGACACGTTAGTGCAGCTCATGAGGATGGGAGAACTTATCAGTGTGAAATTTGTGCAAAGATGTTTAAACAGCTGGCGCATTTATATGTTCATAAAAAAGTACACACCGATGAAAGACCTTATCAATGTCATCtttgtgataaaaattttaagcataaaaatgtattgaaatcACATTTGGCTATTCACGCTAACTTGAGACCCTTTGAATGTGATGTTTGCAAAGCAACATTTGTTAGAAAAACGAATCTTCAGACGCATATAGCTTCTGCTCACATGAACGAACGCCCATATGTTTGCACCATATGTAACAAACGATTTAAACAAGTTAGTCATCTGAACGGCCACGTTGTTGTACACAGTAATTCTATGCCATATCAATGCGACTTTTGTGATCGACGGTGCAATAGAttggataatttgaaaaaacatatGCGCCTGCACACTAAAAGTAAAGAATAA
- Protein Sequence
- MSTASSNKIESQFVSVKQETECLEGNLCPEIDSSQTQTNSNESFVERKIDENKQSTPFMNDGTAIISLDSETMNCIVDADSNQVEENEDTITERINPRCQVDIIDMRNEEFMDYKYILVYEDQTSKFVILRPLRSKDAKDVATELFDILAIIGAPRVLQSQNGRKFASEIVHELRSLWSDLIMVHGDAVISSSSIKRDFKQLLKTWLIENPGKTWCEGLRFVQINENTNFRLAEFDKTPHELIFLNNDSDHLQIFSITKDAVNTIWREEDWQKVINNKKKKQMGNETSNSKFFDDNYSKKLISIYDPVSQIDEDISIKEDESDIQESGFENRTRQSSKNFNNSTGFKFVNVKNESPLNVSQLDDSQSETEVNENSQTKTRPRDKYPLKCKICQKRYMKLGHLKNHLKAHTKDNGFECTICCKKFRLLTIYEKHMRRFHNSDEKTPSDIKGGLRTDTEENFKLKRLMDADLRAEDTDALQNRKAIKVAKRLTRPGSKKSSKENRATRLNGTPLLECSYCQQKFDFPSVLKRHIRSHTNERPYVCQICNKSFKQLGHLSQHSLTHTDYRSFQCATCGIKFESLDSLKIHSQSHRGDTVMYRPKEVYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLVHTGERKFECKVCSKRFSLSNSLKKHMYIHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCNICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLYVHKKVHTDERPYQCHLCDKNFKHKNVLKSHLAIHANLRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICNKRFKQVSHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKSKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01414384; iTF_01413601; iTF_00939791; iTF_01411736; iTF_01303639; iTF_01412537; iTF_00060527; iTF_00938930;
- 90% Identity
- -
- 80% Identity
- -