Tamo007309.1
Basic Information
- Insect
- Tenthredo amoena
- Gene Symbol
- KRBA2
- Assembly
- GCA_963966615.1
- Location
- OZ016484.1:12408288-12411205[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00043 0.045 14.8 4.1 2 23 404 425 403 425 0.97 2 15 0.00047 0.05 14.6 2.5 1 23 431 454 431 454 0.98 3 15 6.6e-05 0.007 17.3 1.1 2 23 529 550 528 550 0.97 4 15 3e-05 0.0032 18.4 3.1 1 23 556 578 556 578 0.98 5 15 0.00027 0.029 15.4 0.4 1 23 584 606 584 606 0.98 6 15 1.2e-06 0.00012 22.8 1.4 1 23 622 644 622 644 0.98 7 15 7.7e-06 0.00081 20.2 1.2 3 23 652 672 650 672 0.98 8 15 1.3e-05 0.0014 19.5 2.2 1 23 678 700 678 700 0.98 9 15 0.00094 0.1 13.7 0.2 1 23 706 728 706 728 0.99 10 15 2.1e-05 0.0023 18.8 0.2 1 23 734 757 734 757 0.92 11 15 3.5e-05 0.0037 18.2 1.5 1 23 763 785 763 785 0.98 12 15 0.00031 0.033 15.2 4.5 1 23 791 813 791 813 0.98 13 15 7e-06 0.00074 20.4 0.2 1 23 819 842 819 842 0.96 14 15 1.6e-05 0.0017 19.3 0.9 1 23 848 870 848 870 0.96 15 15 4.1e-06 0.00044 21.1 4.5 1 23 876 898 876 898 0.99
Sequence Information
- Coding Sequence
- ATGGAGAGTACGGTCCCATTGAACAGTAAATGGTTGGAAAACAAACTTACTATAATAAACAACCTAAATTCCACATCaacaaacaaaattgaatCTCATTTAGTATCTGTGAAGCAAGAGGAAGAGTTTATCGACGATGACTTATGCCCGGAGTCTGCTGCTACACAAACtaattcaaatgaatttttgatcaaaCCGAAGAGTGATGAAATTAATCAACTTACACCATTAGTAAGTAACAATACTGCTATTATTAGTTCGGATTCTGAGGCTATGAATCATATTGTTGAAGCTGGTTTGAGccaaggagaaaaaaatgaggatTCTATCTCTGAGAGGATAACTCCTCGTGGTCAAGTTGACATTATTGATATGAGAAATGATCAATTTATGGAATACAAGTTCATCCTTGTTTACGAAGATCAGAACTCAAAATTTGTTATACTACGTCCGTTGAGAAGTAAAGATGCAAAAGATGTTGCGGCTGAATTGTTTGATATATTTGCAATTATCGGAGCTCCTAGGGTATTGCAGAGCAAAAATGGCACGGATTTTGCTAGCGAAATTGTCCACGAATTAAGATCGATGTGGGAAGATCTTCTGATGGTGTATGGCAATGTTGTGATCTCTTCTGCAAGTATTGAACGAGATTTTAAACAGCTCTTGAAAACCTGGCGCGTTGATAATCCTGGAAAAACATGGTGCGAAGGGCTTAGGTTTATTCAGATCAGCGAAAACAGAACTTTTCGGTCAGCGTTTGATAAGACTCCGCATGAGTTGGTATTCGTAAACAATGATAACCAGCTCCCAACATCACCTATTCCAAAAGTACCTATTAACACAATATGGTGCGAGAAAGACTGGCAAAAACTAatcaaaaatcagaaggaaaGGGGCCGAGCGAACAATGAGACTTCCAATACAAAGTTGTTTGATGATAACTACAGTGCAAAGGGCATAAATAGTGATTCAATCAGCCAGATTGGGGATATTCCCATCAAAGAAGACGGTAGCGATCTACAGAGGACTGAATTTGAGAATCAAAATAGACGATTATCCATAAATCGGGAGAATTCTAGTTCATTTAAATTTGTGAATGTTAAGAATGAAAGCCCTTTGAATGTGCCACAAGTAGAGGAGTCACAATCGGAAACTGAAGCGAACGAAAATTGTAATACTAAAACAAGACAGCGGGATAAATATCAGTTGAAGTGCAAGATCTGCCAAAAAAGATATATGAAATTGGGACATCTGAAAAATCACCTCAAGTCACACACAAAAGCTAACGGTTTTGAGTGTACAATTTGCTCCAAGAAGTTCCGACTCTTGACTGTTTACGAAAAGCACATGCGTCGCTTTCATAACTCTGATAAAACCTCTACCAATGTTAAACAGAGTCTTCAAAGTGATacagatgaaaatttgaagcttAAAAGACTGGTCGATGTTGAACTGAAAACTGAAGTTACTGAGACACTGCACAACAAAGAAGTAAAGAAAGTTGAAAGACGCTTAACTCGTCCACGcggtaaaaaattatcgaaagaaaatcaaGTCACTAGATTCAATGGCGCTCCTTTGTTAGAGTGTAGCTATTGCCAGCAAAAGTTTAATTTTCCAAGCGTTTTGAAAAGACACGTAAGATCGCACACTAATGAACGACCATACGTTTGCCAGACATGCAATAAGAGCTTCAAACAATTAGGACACTTAAGTCAACATTCGTTAACGCACACAGACTATCGTTCCTTCCAGTGTGTGACATGTGGGATAAAGTTCGAATCATTAGACAGTTTAAAAATCCATTCGCAGTCCCATCGAGGTGATACTGTAATGTATAGACCAAAAGAAGTATATCGTCTGTTCGAGTGTGATAATTGCAAAAAAGTATTCACAACTAAAAGCGTACTGGAAAGGCACATCTTTACTCACACTCACGAACGTCAATTTGGCTGTAAAGTATGCGGTAAAAGATTTAAGCAAGCAGGTCACGTCAAATCTCACATGCTCGTACATACGGGAGAGCGAAAGTTTGAATGTAAAGTTTGCTCGAAGAGATTCAGCCTTTCTAATTCCCTAAAAAAACACATGTACATTCACAATGGCGAGAAACCTTATCAATGCGATGTATGCGGTGCTCGTTTTCTTGAGAAACGAAACTTGAATGGTCATCTAATGACTCATACAAACGAGCGGCCTTTTTCCTGTAATATTTGTGGCAAGAGATACACTCTTGCCGATACTCTGAGACGTCACGTTAGCGCAGCTCATGAGGATGGCAGAACTTATCAGTGCGAGATTTGCGCTAAGATGTTTAAACAGCTGGCACACTTATATGTGCATAAAAAGGTTCACACGGATGAACGACCTTATCAATGTCAcctttgcgaaaaaaatttcaagcatAAGAATGTTCTAAAATCACATTTGGCTATACATGCTAATTTGAGACCGTTTGAATGCGATGTTTGCAAAGCAACATTTGTAAGAAAAACTAATCTCCAAACGCATATAGCTTCTGCGCACATGAATGAACGCCCATATGTTTGCACCATTTGTAACAAACGATTTAAACAAGTTAGCCATTTGAACGGTCATGTTGTTGTACATAGTAATTCTATGCCATATCAGTGTGACTTTTGCGATCGACGTTGTAACAGATtggataatttgaaaaagcaTATGCGTTTGCATACTAAAAGCAAAGAATAA
- Protein Sequence
- MESTVPLNSKWLENKLTIINNLNSTSTNKIESHLVSVKQEEEFIDDDLCPESAATQTNSNEFLIKPKSDEINQLTPLVSNNTAIISSDSEAMNHIVEAGLSQGEKNEDSISERITPRGQVDIIDMRNDQFMEYKFILVYEDQNSKFVILRPLRSKDAKDVAAELFDIFAIIGAPRVLQSKNGTDFASEIVHELRSMWEDLLMVYGNVVISSASIERDFKQLLKTWRVDNPGKTWCEGLRFIQISENRTFRSAFDKTPHELVFVNNDNQLPTSPIPKVPINTIWCEKDWQKLIKNQKERGRANNETSNTKLFDDNYSAKGINSDSISQIGDIPIKEDGSDLQRTEFENQNRRLSINRENSSSFKFVNVKNESPLNVPQVEESQSETEANENCNTKTRQRDKYQLKCKICQKRYMKLGHLKNHLKSHTKANGFECTICSKKFRLLTVYEKHMRRFHNSDKTSTNVKQSLQSDTDENLKLKRLVDVELKTEVTETLHNKEVKKVERRLTRPRGKKLSKENQVTRFNGAPLLECSYCQQKFNFPSVLKRHVRSHTNERPYVCQTCNKSFKQLGHLSQHSLTHTDYRSFQCVTCGIKFESLDSLKIHSQSHRGDTVMYRPKEVYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLVHTGERKFECKVCSKRFSLSNSLKKHMYIHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCNICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLYVHKKVHTDERPYQCHLCEKNFKHKNVLKSHLAIHANLRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICNKRFKQVSHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKSKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01200365;
- 90% Identity
- iTF_01412537;
- 80% Identity
- -