Tscr014004.1
Basic Information
- Insect
- Tenthredo scrophulariae
- Gene Symbol
- KRBA2
- Assembly
- GCA_963978835.1
- Location
- OZ022231.1:7121211-7124157[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00043 0.054 14.8 4.1 2 23 405 426 404 426 0.97 2 15 0.00047 0.059 14.6 2.5 1 23 432 455 432 455 0.98 3 15 6.6e-05 0.0083 17.3 1.1 2 23 530 551 529 551 0.97 4 15 6.9e-06 0.00086 20.4 2.3 1 23 557 579 557 579 0.98 5 15 0.00022 0.027 15.7 0.3 1 23 585 607 585 607 0.98 6 15 1.2e-06 0.00015 22.8 1.4 1 23 623 645 623 645 0.98 7 15 7.7e-06 0.00096 20.2 1.2 3 23 653 673 651 673 0.98 8 15 1.3e-05 0.0017 19.5 2.2 1 23 679 701 679 701 0.98 9 15 0.00095 0.12 13.7 0.2 1 23 707 729 707 729 0.99 10 15 2.2e-05 0.0027 18.8 0.2 1 23 735 758 735 758 0.92 11 15 3.5e-05 0.0044 18.2 1.5 1 23 764 786 764 786 0.98 12 15 9.2e-05 0.011 16.9 4.6 1 23 792 814 792 814 0.98 13 15 7e-06 0.00088 20.4 0.2 1 23 820 843 820 843 0.96 14 15 1.6e-05 0.002 19.3 0.9 1 23 849 871 849 871 0.96 15 15 4.2e-06 0.00052 21.1 4.5 1 23 877 899 877 899 0.99
Sequence Information
- Coding Sequence
- ATGGAGAGTACTGTCCCGATAAACAGTGGTAAATGGTTGGACGACAAGCTTAGTACAATAACCAGCGTAAATTCAACATTgacaaataaaattgaatctcATTTTGTATCTgtgaaagaagaggaagagttTATCAACGATAACTTATGCCCGGAGTCTGCTGCTGCTACacaaaataattcaaataaatcttTGACCAAACCGAAGTGTAATGAAATTGATCAACTTAAACCGTTAGTAAGTAACGATACTGCTATTATTCATTCTGATTCTGAGACTATGAATCATATTGTCGAAGCTGGTTTGAGCCAAGTGAAAGAAACTGAGAATTCTATATCTGAGAGGATAAATCCTCGTGGTCAAGTCGACATTATTGATATGAGAAATGACCAATTTATGGATTACAATTTCATCCTTGTTTACGAAGATcagaattcaaaatttgttaTACTACGTCCGTTGAGAATTAAAGATGCGAAAGATGTAGCGTCTGAGTTATTCGACATATTTGCAATTATCGGAGCTCCTAGGGTATTGCAGAGCGAAAATGGCACAGATTTCGCTAGCGAAATAGTACACGAGTTAAGATCCCTGTGGGAAGATCTTCCGATTGTTTACGGCGACGTTGTGATCTCTTCTACAATTATTAAGCGAGATTTTAAACAGCTATTGAAAACCTGGCTTATTGATAATCCTGGAAAAACATGGTGCGAAGGGCTTAGGTTTGTTCAAATCAACGAAAACAGAAATTTTCCATCAGAGTTTGAGAGAACTCCACACGAATTGTTCTTCATAAACAATGATAACGAGCTCAAAACATCATCTATTCCAAAAGAAGCTATTAAGACAATTTGGTGCGAGAAAGACTGGCAAAAActaatcaaaaatcaaaaggAAAGGGACAAAACGAACAATGAGacttcaaataaaaaattgtttgatgaTAACTACAGTGCAAAGGGCATAAGCAGTGATTCAATCAGTCAGATTGAAGAGGATATTCCTATCAAAGAAGATGGTAGTGATCTACAGGGGACTGAATTTGAGAATCAAACGAGACGATCATCGATAAATCGGGAAAATTCTAGTGGATTTAAATTTGTAAATGTTAAGAACGAAAGCCCTTTGAATGTATCACAAGTAGAGGAGTCACAATCGGAAACCGAAGAGAATTGTAATGCTAAAATAAGACAACGAGATAAATATCAGTTGAAGTGCAAGATCTGCCAGAAAAGATATATGAAATTGGGACATCTGAAAAATCACCTCAAGTCACACACGAAAGCTAACGGTTTTGAGTGTACAATTTGCTCCAAGAAGTTCCGACTCTTGACTGTTTACGAAAAGCACATGCGTCGCTTTCATAACTCTGATAAAACTCCTACCAATGTTAAACAGGGAGTTCAAGCTGATACAgacgaaaatttgaagcttAAAAGACTGACCGATGTTGAGCTGAAAACTGAAGATACCGAGACACTACGCAACAAAGAAGTAAACAAAGTTAAAAGACCTCTAACTCGTCCAGGCAGTAAAAAATTCTCGAAAGAAAATCGAGCCACTAGATTAAATGGCGCTCCTTTGTTAGAGTGTAGCTATTGCCAGCAAAAGTTTAATTTTCCAAGCGTTTTGAAAAGACATGTGAGATCGCACACCAATGAACGACCATACGTTTGTCAGATATGCAATAAGAGCTTTAAACAATTAGGACACTTGAGTCAACATTCGTTAACGCACACAGACTATCGTTCCTTCCAGTGTGCGACATGTGGGATAAAGTTCGAATCGTTAGacagtttgaaaattcattcgcAGTCCCATCGAGGTGATACTGTAATGTATAGACCAAAAGAAGTATATCGTTTATTCGAGTGTGATAATTGCAAAAAAGTATTCACAACTAAAAGTGTACTGGAAAGGCACATATTTACCCACACCCACGAACGTCAATTTGGCTGTAAAGTATGCGGTAAAAGATTCAAGCAAGCAGGTCACGTCAAATCTCACATGCTGGTACACACAGGAGAACGAAAGTTTGAATGTAAAGTTTGCTCGAAGAGATTCAGCCTCTCTAATTCCCTAAAAAAACACATGTACATTCACAATGGTGAGAAACCTTATCAATGCGATGTATGCGGTGCTCGTTTTcttgaaaaacgaaatttgaatGGGCATCTAATGACTCATACAAACGAGCGGCCTTTTTCCTGTAATATTTGTGGCAAAAGATATACTCTTGCCGATACTCTGAGACGTCATGTTAGCGCAGCTCATGAGGATGGCAGAACTTATCAGTGCGAAATTTGCGCTAAGATGTTTAAACAGCTAGCGCACTTATATGTGCATAAAAAGGTTCATACGGATGAACGACCTTATCAATGTCACCtttgcgataaaaatttcaagcatAAGAATGTTCTGAAATCTCATTTGGCTATACACGCTAATTTAAGACCGTTTGAATGTGATGTTTGCAAAGCAACATTTGTAAGAAAAACTAATCTCCAAACGCATATAGCTTCTGCGCACATGAATGAACGCCCATATGTTTGCACCATTTGTAACAAACGATTTAAACAAGTTAGCCATTTGAATGGTCATGTTGTTGTACATAGTAATTCTATGCCATACCAGTGTGATTTTTGCGATCGACGTTGTAACAGATTGGATAATTTGAAAAAGCATATGCGTTTGCATACTAAAAGTAAAGAATGA
- Protein Sequence
- MESTVPINSGKWLDDKLSTITSVNSTLTNKIESHFVSVKEEEEFINDNLCPESAAATQNNSNKSLTKPKCNEIDQLKPLVSNDTAIIHSDSETMNHIVEAGLSQVKETENSISERINPRGQVDIIDMRNDQFMDYNFILVYEDQNSKFVILRPLRIKDAKDVASELFDIFAIIGAPRVLQSENGTDFASEIVHELRSLWEDLPIVYGDVVISSTIIKRDFKQLLKTWLIDNPGKTWCEGLRFVQINENRNFPSEFERTPHELFFINNDNELKTSSIPKEAIKTIWCEKDWQKLIKNQKERDKTNNETSNKKLFDDNYSAKGISSDSISQIEEDIPIKEDGSDLQGTEFENQTRRSSINRENSSGFKFVNVKNESPLNVSQVEESQSETEENCNAKIRQRDKYQLKCKICQKRYMKLGHLKNHLKSHTKANGFECTICSKKFRLLTVYEKHMRRFHNSDKTPTNVKQGVQADTDENLKLKRLTDVELKTEDTETLRNKEVNKVKRPLTRPGSKKFSKENRATRLNGAPLLECSYCQQKFNFPSVLKRHVRSHTNERPYVCQICNKSFKQLGHLSQHSLTHTDYRSFQCATCGIKFESLDSLKIHSQSHRGDTVMYRPKEVYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLVHTGERKFECKVCSKRFSLSNSLKKHMYIHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCNICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLYVHKKVHTDERPYQCHLCDKNFKHKNVLKSHLAIHANLRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICNKRFKQVSHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKSKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01200365;
- 90% Identity
- iTF_01413601;
- 80% Identity
- -