Rchl032420.1
Basic Information
- Insect
- Rhogogaster chlorosoma
- Gene Symbol
- KRBA2
- Assembly
- GCA_944452905.1
- Location
- CALYCC010000730.1:12991-15868[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00042 0.065 14.7 3.6 2 23 398 419 397 419 0.97 2 15 0.00043 0.066 14.6 2.5 1 23 425 448 425 448 0.98 3 15 0.00011 0.017 16.5 0.6 2 23 523 544 522 544 0.97 4 15 6.2e-06 0.00096 20.4 2.3 1 23 550 572 550 572 0.98 5 15 0.0002 0.03 15.7 0.3 1 23 578 600 578 600 0.98 6 15 1.1e-06 0.00016 22.8 1.4 1 23 616 638 616 638 0.98 7 15 7e-06 0.0011 20.3 1.2 3 23 646 666 644 666 0.98 8 15 1.8e-05 0.0028 19.0 1.8 1 23 672 694 672 694 0.98 9 15 0.00086 0.13 13.7 0.2 1 23 700 722 700 722 0.99 10 15 2e-05 0.003 18.8 0.2 1 23 728 751 728 751 0.92 11 15 3.2e-05 0.0049 18.2 1.5 1 23 757 779 757 779 0.98 12 15 8.3e-05 0.013 16.9 4.6 1 23 785 807 785 807 0.98 13 15 6.4e-06 0.00098 20.4 0.2 1 23 813 836 813 836 0.96 14 15 1.4e-05 0.0022 19.3 0.9 1 23 842 864 842 864 0.96 15 15 3.8e-06 0.00058 21.1 4.5 1 23 870 892 870 892 0.99
Sequence Information
- Coding Sequence
- ATGGAGAGCACTGTCCCACTGAGCAATAAATGGTTAGAAAACAGCGTGAATTCCACATCAACGAACAAAATTGAATCTCACTTCGTGTCTGTGAAACAAGAGGAAGAGTTTATCGACAACAACCTATGCCCGGAGTCTGCTGATACAGAAACCAATCCAAATCAATCTCTGACCGAACCGAAGAGTAATGAAATTAATCGACTCACACCATTAGCGAGTGACAATACGGCTATTGTTACTTTGGATTCTGAGACTATGAACCGTATTGCTGAAGCTGGTTTGAGCCAGGGCGAAGAAAATGAGGATTCTATACCTGAGAGGATAAGTCCTCGGGGTCAAGTCGAGGTTATAGATATGAGAGACGATCAATTTATggactacaagttcatccttgtttacgaagatcagaattcaaagttcgttatactacgtccattgataagtaaagatgcgaaagatgttgcggctgaattgtttgatatgtttgcaatcatcggagctcctagggtattgcagagcaaaaatgggacggattttgctagcgaaattgtccacgaattgagatccatgtggGAAGATCTTCCGACGGTGTACGGCGATGTTGTCATCTCTTCTACGATTATTAAACGAGACTTTAAACAGCTCTTGAAAACCTGGCTGGTTGATAATCCTGGAAAAACGTGGCGCGAAGGGCTTAGATTTCTTCAAATCAATGAAAACAGAACTTTTCGATCAGATTTCGATAAAACTCCGCATGAATTGGTCTTTGTAAACAACGATAACCAGCTCGGATCATCATCTATTCCTAAAGAAGCTTTTAACACGATTTGGTGCGAGAAAGACTGGCAAAAACTGATCAAAAATCAAAAGGAAAGGGGCCAAACGAACAGTGAGACTTCCAGTACAAAATTGTTTGATAACTACAGTGCAAAAGGCATCAAGAGTGACTCAATGAGCCGGATTGATGAGGATATTCCGATCAAAGAAGATGGTAGCGATCTACAGGGTAGAGAATTTGGGAATCAGACTATAGGatcatcgataaatcgggaaaattctagtggctttaaatTTGTGAATGTCAAGAATGAAAGCCCGTTGAATGTTTCACAAGTAGAAGAATCACAGTCGGAAACCGAAGCGAATGAAAATTGTAATACCAAAACAAGACAGCGGGACAAATATCAGTTGAAATGCAAGATCTGCGAGAAGAAATACATGAAATTAGGACATCTGAAAAATCACCTCAAGTCACACACAAAAGCTAACGGTTTCGAGTGTACAATTTGTTCCAAGAAGTTCCGACTCTTGACTGTTTACGAAAAACACATGCGTCGCTTTCATAACTCTGATAAAACTCCCGCCGATGTTAAACGTGGTCTTCAAAGTGATAGGGAAGAAAATTTGAAGCTTAAAAGACTGGTCGATGTTGAGGCCAAAACCGAAGACACAAAGACACTGCGAAAGAAAGAAATGCCGAAAGTTGGAAGACCCGCAAATCGTCCAGGCGGTAAAAGATTATCCAAAGAAAATCGAGCCACTAGATTCAACGGCGCTCCTCTGTTAGAGTGTAGCTATTGCGAGCAGAAGTTCGACTTCCCAAgtgttttaaagagacacgtgagatcgcacactaacgaacgaccatacgtttgtcagatatgcaacaagagctttaaacaattaggacacttgagtcagcactcgttaacgcacacagactatcgttccttccagtgtgcgacctgtggGATAAAGTTCGAATCATTAGACAGTTTGAAAATCCATTCGCAGTCCCACAGAGGTGACACTGTGATGTATAGACCGAAGGAAGTATATCGTctgttcgagtgtgacaactgcaagaaagtattcacgacaaaaagcgtactggaaaggcacatatttactcacactcacgaacgtcagttcgggtgtaaagtgtgcggtaaaagattcaagcaggctggtcacgtcaaatctcacatgctggtacacacgggggaacgaaagtttgaatgtcaagtttgctccaagagattcagcctctctaattccctcaaaaaacacatgtatattcacaacggtgagaaaccttaccaatgcgatgtatgcggggctcgttttcttgagaaacgaaatttaaacgggcatctaatgactcatacaaacgagcggcctttttcctgtaatatttgcggcaagagatacactctcgccgatactctgagacgtcacgttagcgcggctcatgaggacgggagaacttatcagtgcgagatttgcgccaagatgtttaaacagctggcgcacttatacgtgcataaaaaagttcacaccgatgaaagaccttaccagtgtcacctttgcgacaaaaatttcaagcataagaacgttctcaaatcacatttggctattcacgctaatttgagaccgtttgaatgcgacgtttgcaaagcaacgtttgtaagaaaaactaatctacaaacgcatatagcttctgcacacatgaatgaacgcccgtatgtttgtactatttgcaacaaacgatttaagcaagttagccatttgaacggccatgttgttgtacatagtaattctatgccatatcagtgtgacttttgcgatcgacgttgtaacagattggataatttgaaaaagcatatgcgtttgcacactAAAAGTAAAGAATAG
- Protein Sequence
- MESTVPLSNKWLENSVNSTSTNKIESHFVSVKQEEEFIDNNLCPESADTETNPNQSLTEPKSNEINRLTPLASDNTAIVTLDSETMNRIAEAGLSQGEENEDSIPERISPRGQVEVIDMRDDQFMDYKFILVYEDQNSKFVILRPLISKDAKDVAAELFDMFAIIGAPRVLQSKNGTDFASEIVHELRSMWEDLPTVYGDVVISSTIIKRDFKQLLKTWLVDNPGKTWREGLRFLQINENRTFRSDFDKTPHELVFVNNDNQLGSSSIPKEAFNTIWCEKDWQKLIKNQKERGQTNSETSSTKLFDNYSAKGIKSDSMSRIDEDIPIKEDGSDLQGREFGNQTIGSSINRENSSGFKFVNVKNESPLNVSQVEESQSETEANENCNTKTRQRDKYQLKCKICEKKYMKLGHLKNHLKSHTKANGFECTICSKKFRLLTVYEKHMRRFHNSDKTPADVKRGLQSDREENLKLKRLVDVEAKTEDTKTLRKKEMPKVGRPANRPGGKRLSKENRATRFNGAPLLECSYCEQKFDFPSVLKRHVRSHTNERPYVCQICNKSFKQLGHLSQHSLTHTDYRSFQCATCGIKFESLDSLKIHSQSHRGDTVMYRPKEVYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLVHTGERKFECQVCSKRFSLSNSLKKHMYIHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCNICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLYVHKKVHTDERPYQCHLCDKNFKHKNVLKSHLAIHANLRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICNKRFKQVSHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKSKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01200365;
- 90% Identity
- -
- 80% Identity
- -