Tmes004600.1
Basic Information
- Insect
- Tenthredo mesomela
- Gene Symbol
- KRBA2
- Assembly
- GCA_943736035.1
- Location
- CALSEY010000036.1:419561-422574[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00039 0.08 14.8 4.1 2 23 399 420 398 420 0.97 2 15 0.00042 0.088 14.6 2.5 1 23 426 449 426 449 0.98 3 15 9.5e-05 0.02 16.7 0.8 2 23 524 545 523 545 0.97 4 15 6.2e-06 0.0013 20.4 2.3 1 23 551 573 551 573 0.98 5 15 0.00019 0.041 15.7 0.3 1 23 579 601 579 601 0.98 6 15 1.1e-06 0.00022 22.8 1.4 1 23 617 639 617 639 0.98 7 15 7e-06 0.0014 20.3 1.2 3 23 647 667 645 667 0.98 8 15 1.2e-05 0.0025 19.5 2.2 1 23 673 695 673 695 0.98 9 15 0.00085 0.18 13.7 0.2 1 23 701 723 701 723 0.99 10 15 1.9e-05 0.0041 18.8 0.2 1 23 729 752 729 752 0.92 11 15 3.1e-05 0.0065 18.2 1.5 1 23 758 780 758 780 0.98 12 15 8.3e-05 0.017 16.9 4.6 1 23 786 808 786 808 0.98 13 15 6.3e-06 0.0013 20.4 0.2 1 23 814 837 814 837 0.96 14 15 1.4e-05 0.003 19.3 0.9 1 23 843 865 843 865 0.96 15 15 3.7e-06 0.00078 21.1 4.5 1 23 871 893 871 893 0.99
Sequence Information
- Coding Sequence
- ATGAGCAGTAAATGGTTGGACAACAAGATTAGTATAATAAACAGCGTGAATTCCACATCAATAAATAATATCGAATCTCATTTTGTGTCTGTGAAAGAAGAGGAAGAGTTTATCGGCGATAACTTATGCCCGGAGTCTGCTGCTGCTGCTGTTGCTACTGCTACACAAAATAATTCAAATGAATCTTTGATCAAACCAATGTGTAATGAAATTGATCAACTTAGACCGTTGATTATTCATTCTGATTCTGAGACTATGAATGATATTGTCGAAGCCGGTTTGAGCCAAGGAGAAAAAACCGACGATTCCAtatctgagaggataaatcctcgtggtcaagtcgacattattgatatgagaaatgaccaattcatggattacaattttatccttgtttacgaagatcagaattcaaaatttgttatactacgtccgttgagagttaaagatgcgaaagatgtagcgtctgagttatttgatatattttcaattatcggagctcctagggtattgcagagcgaaaatggcaccgattttgctagcgaaattgtacatgagttaagaaccctgtgggaagatcttctgattgtttatggcgaCGTCGTGATCTCATCTACAATTATTAAGAGAGATTTCAAACAGCTATTGAAAACCTGGCTTATTGATAATCCTGGAAAAACATGGTGCGAAGGACTTCGGTTTGTTCAAATCAGCGAGAATAGAAATTTTCGATCACAGTTTGATAAAACTCCGCACGAATTGTTGTTCATAAACAATGATAACGAGCTCAAAACATCATCCATTCCAAAAGAAACTATTCAAACAATATGGTGTGAGAAAGACTGGCAAAAACTAATCAAAAGTCAAAAGGAAAGGGGCCAAACGAACAATGAGACTTTAAATAAAAAATTGTTTGACGATAGCTACAGTGCAAAGGGCATAAGCAGTGATTCTATCAGTCAGATTGAGGAGGATACTCCCATCAAAGAAGATGGTAGCGATCTACAGGGAACTGAATTTGCAAATGAAACTAGACGATCGTCGATAAATCGAGAAAATTCTAGTGGATTTAAATTTGTAAATGTTAAGAACGAAAGCCCTTTGAATGTCTCACAAGTAGAGGAGTCACAATCTGAAACTGAAGCGAATGAAAATTGTAATGCTAAAACAAGACAACGAGATAAATATCAGTTGAAGTGCAAGATCTGCCAGAAAAGATATATGAAATTAGGACATTTGAAAAATCATCTCAAATCACACACAAAAGCTAACGGTTTTGAGTGTACAATTTGCTCAAAGAAGTTCCGACTCTTGACTGTTTACGAAAAGCACATGCGTCGTTTTCATAACTCAGATAAAACTCCTACCAATGTTAAAGGGGGAGTTCCAGGTGATACAGACGAAAATTTGAAGCTTAAAAGACTGACCGATGTTGAGTTGAAAACTGAAGATACCGAGACACTGCGTAAGAAAGAAGTAAAGAAAGTTAGAAGACGCCTAACTCGTCCAGGCAGTAAAAAGTTATCGAAAGAAAATCGAGCCACTAGATTAAATGGCGCTCCTTTGTTAGAGTGTAGCTATTGTCAGCAAAAGTTTGACTTTCCaagcgttttgaaaagacacgtaagatcgcacactaatgaacgaccatacgtttgtcagatatgcaataagagctttaaacaattaggacacttgagtcaacactcgttaacgcacacagactatcgttcgttccagtgtgcaacatgtgggataaagttcgaatcattagacagtttaaaaatccattcgcagtcccatcgaggtgacaccgtaatgtatagaccaaaagaagtatatcgtctattcgagtgtgataattgcaaaaaagtattcacaactaaaagtgtactagaaaggcacatatttactcacacccacgaacgtcaatttgggtgtaaagtatgcggtaaaagatttaagcaagcaggtcacgtcaaatctcacatgctggtacacacaggagaacgaaagtttgaatgtaaagtttgctcgaagagattcagcctctctaattccctaaaaaaacacatgtacattcacaatggtgagaaaccttatcaatgcgatgtatgcggtgctcgttttcttgagaaacgaaatttgaatggccatctaatgactcatacaaacgaacggcctttttcctgtaatatttgtggcaagagatacacacttgccgatactctgagacgtcatgttagcgcagctcatgaggatggtagaacttatcagtgcgaaatttgtgctaagatgtttaaacagctggcgcacttatatgtgcataaaaaggttcacacggatgaacgaccttatcaatgtcacctttgcgataaaaatttcaagcataagaatgtactaaaatcacatttggctatacacgctaatttgcgaccgtttgaatgcgatgtttgcaaAGCAACATTTGTAAGAAAAACTAATCTCCAAACGCATATAGCTTCTGCGCACATGAATGAACGCCCGTATGTTTGCACAATTTGTAACAAACGATTTAAACAAGTTAGTCATTTGAATGGTCATGTTGTTGTACATAGTAATTCTATGCCATATCAGTGTGACTTTTGCGATCGACGTTGTAACAGATTGGATAATTTGAAAAAGCATATGCGTTTGCATACTAAAAGTAAAGAATGA
- Protein Sequence
- MSSKWLDNKISIINSVNSTSINNIESHFVSVKEEEEFIGDNLCPESAAAAVATATQNNSNESLIKPMCNEIDQLRPLIIHSDSETMNDIVEAGLSQGEKTDDSISERINPRGQVDIIDMRNDQFMDYNFILVYEDQNSKFVILRPLRVKDAKDVASELFDIFSIIGAPRVLQSENGTDFASEIVHELRTLWEDLLIVYGDVVISSTIIKRDFKQLLKTWLIDNPGKTWCEGLRFVQISENRNFRSQFDKTPHELLFINNDNELKTSSIPKETIQTIWCEKDWQKLIKSQKERGQTNNETLNKKLFDDSYSAKGISSDSISQIEEDTPIKEDGSDLQGTEFANETRRSSINRENSSGFKFVNVKNESPLNVSQVEESQSETEANENCNAKTRQRDKYQLKCKICQKRYMKLGHLKNHLKSHTKANGFECTICSKKFRLLTVYEKHMRRFHNSDKTPTNVKGGVPGDTDENLKLKRLTDVELKTEDTETLRKKEVKKVRRRLTRPGSKKLSKENRATRLNGAPLLECSYCQQKFDFPSVLKRHVRSHTNERPYVCQICNKSFKQLGHLSQHSLTHTDYRSFQCATCGIKFESLDSLKIHSQSHRGDTVMYRPKEVYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLVHTGERKFECKVCSKRFSLSNSLKKHMYIHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCNICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLYVHKKVHTDERPYQCHLCDKNFKHKNVLKSHLAIHANLRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICNKRFKQVSHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKSKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01200365;
- 90% Identity
- iTF_01414384;
- 80% Identity
- -