Pvar002993.1
Basic Information
- Insect
- Phortica variegata
- Gene Symbol
- -
- Assembly
- GCA_001014415.1
- Location
- JXPM01005548.1:1653-6088[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.6e-09 2e-05 24.2 0.0 16 38 538 562 533 567 0.83 2 4 2.8e-14 1e-10 41.2 0.1 2 39 579 616 578 619 0.94 3 4 6.1e-18 2.2e-14 52.9 0.0 1 45 633 678 633 678 0.98 4 4 2.6e-19 9.1e-16 57.3 0.0 1 45 685 730 685 730 0.97
Sequence Information
- Coding Sequence
- GGCTTATTACGTACCGCCGAacagttaaaaattaaaggacTCTGTGAGACAGCTGAGAACGCAGACGATTTAAACGACGCCGCCACTGCGACAATCACCGTCTCCGAGAATATACAGCAAGCCGTGGTTGGCAATATTGTTAATGCGACCATAGTTCCAGGCGCTGAATCGCctaatacacaacaacaactgcaggtGCAAcatcaccagcagcaacagcagttaGTCCAACAGCAACTTGGTAACTCTACGGTGCTAACGCAACACGCAATTTCAGCGAGTAGTGCGCAATTGGCAACTGCTGGTGGTCAATTGATAGCCACGACACCAACAAGCATCGGACAGCAACTGCAGCAGCCGCCGCGTAAGTCGCGTGTTCGTAAGCGTTCAAAGTCGCCTGAtctgcaattgcaacaacaacatcagcagcagcaacagcaccaacaacagcaggcaCATTCACAATCCCAACAACATCATCCGCAAACTATACTCATACAAGGGCAAGATCCGACATCTATTGTCAGTCTGCAACACACTGCCGGTGGTAGTTATATACCTGTCTCAAGCGTACAGACCGTAACCACAAGTTTGGCTGGTGGAGCGCACATACAGACCATTGCAGCGACAGTGTCAGCAGTTACAGACGAGGATTCAGATCAAGCGGACAAGCCAACATTgcagaaaatttgcaaaacagAGCAATCGGCCACATCGCCGGTATCTACATCGTCGACCTCGAATAATGCAACTGGACCAGGTGGTGTAACcacagtggcagcaacatcTGCAGGCGTACCGGGCACAGCGATTGTAACACAAATTGTAGTAGCGCGTGacggaaaagaaaaaaatatgactaGTTTAGGCATGGGCATGAATGGAGGCCTATTAGGCGTGCCCATGGGATTTTTGGATTTTACACCCGAACCACCAGCACCGTCAGCCACACCAGTCACCGTAACGGAACACGCAGATCTCTCTTGTAATCCCAGCACCGACACACGAGATCTGTCAAATCCCACCGAACCACTTGACATCGACAATCATTTAGCCCAACAAATACACCGACTCGATCAATCTCCAATGCATTCAATCGCTCATCATCAAACCGGCGATGAAAGTAACTCGAACCTGGTGCAACAGATTAAAAGTGAAGTAATTGAGGCAAAGCAACTGGCGGCGCAACAACAGGCAGCCGCACAGCATGCCGCCCAACAACATCACCAAGTGCAGCAACACCAACTGCATGCCCAGCAACTGGTCACCCAGGCGCATTCTCAGCctcaccaacatcaacaacatcagcaggtACATCAACAACATGCACAGCCATCGCATTCAGAGTTGTCAGGTGGCACTGTAATGGAGATTGATCCGAGCCAAATAAAACATGAACCGGGCATGATTATAACGCCTGAAATTGTCAACATGATGACCACTGGGCATATGGATATGTATAATTCTGATACGAGCGAAGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCACACTACACAAATTTGGATCAGCAGCATGGCGGGAGCGGtgctggtggtggcggtggtggtgagATGAAAGATGCATTAAAGAATCAAAATATGAGCCTGACGAAAGCATCCACCACCTATGGAATACCGTCAACCACACTCTGGCAACGTGCTCACCGCATGGGCATTGAAACGCCAAAGAAGGAAGGCGGCACAAAATCATGGAATGAAGATGCATTGAATAATGCGTTGGAAGCTCTACGGTCTGGACAGATATCAGCGAATAAAGCATCCAAAGCCTTTGGTATACCATCATCGACGCTGTATAAGATTGCACGTCGAGAGGGTATTCGTTTGGCTGCGCCCTTCAATGCCGCTCCTACTACGTGGACACCCGAGGACTTGGAGCGTGCATTGGAGGCCATACGAGCTGGTAACACATCCGTCCAAAAAGCTAGTGCTGAATTCGGTATACCGACAGGGACTCTTTATGGACGTTGCAAACGTGAGGGCATCGAGTTATCGCGATCAAACCCAACGCCCTGGTCCGAGGATGCAATGAATGAAGCATTAAACTCAGTACGTGTTGGCCACATGTCCATTAACCAGGCGGCAATACACTTCAACCTACCTTACAGTTCTCTCTACGGCCGTTTTAAACGTGGCAAGTATGATGTTTCTAATGCCAGTGGAACATCACTGAATAATACTTCGGGCAATACATCTGGCAGCATTGAGATTATTGAACACAGCCAGGAGAATTCTttGCATATGTTGCAGCAACAGTTCCCTTACAGTCCATCGCCTCATCAGCATCCACCGCAACATCACAGCACACCTCAGCAAACTCAAACTTCGCAGCACTTGCAGCCACATGTCGTTCatctgcagcagcaacagcaaccacaacaccATCAATCACAtgctcaacagcaacatatCTCACAACAAGAAGTCGTCACCTCAAGCAGCCAAATCGTTCATACcggacaacaacagcaacagcaacaacaacagcaacaaatccAACAAATATATCAGCACCATGGTACGCCCGAAAGAAGTTGA
- Protein Sequence
- GLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGAESPNTQQQLQVQHHQQQQQLVQQQLGNSTVLTQHAISASSAQLATAGGQLIATTPTSIGQQLQQPPRKSRVRKRSKSPDLQLQQQHQQQQQHQQQQAHSQSQQHHPQTILIQGQDPTSIVSLQHTAGGSYIPVSSVQTVTTSLAGGAHIQTIAATVSAVTDEDSDQADKPTLQKICKTEQSATSPVSTSSTSNNATGPGGVTTVAATSAGVPGTAIVTQIVVARDGKEKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHADLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHQTGDESNSNLVQQIKSEVIEAKQLAAQQQAAAQHAAQQHHQVQQHQLHAQQLVTQAHSQPHQHQQHQQVHQQHAQPSHSELSGGTVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGSGAGGGGGGEMKDALKNQNMSLTKASTTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDALNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGHMSINQAAIHFNLPYSSLYGRFKRGKYDVSNASGTSLNNTSGNTSGSIEIIEHSQENSLHMLQQQFPYSPSPHQHPPQHHSTPQQTQTSQHLQPHVVHLQQQQQPQHHQSHAQQQHISQQEVVTSSSQIVHTGQQQQQQQQQQQIQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00251266; iTF_00061860; iTF_00061032; iTF_01363854; iTF_01195191; iTF_01195370; iTF_00062682;
- 90% Identity
- iTF_01195191; iTF_01195370;
- 80% Identity
- -