Amar019897.1
Basic Information
- Insect
- Amiota mariae
- Gene Symbol
- -
- Assembly
- GCA_035041805.1
- Location
- JAWNKV010000425.1:342542-350056[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.9e-11 9.5e-08 32.6 0.0 1 38 596 634 596 639 0.89 2 4 6.8e-14 2.2e-10 41.0 0.1 2 39 651 688 650 691 0.94 3 4 1.5e-17 4.7e-14 52.8 0.0 1 45 705 750 705 750 0.98 4 4 7.2e-19 2.3e-15 56.9 0.0 1 45 757 802 757 802 0.97
Sequence Information
- Coding Sequence
- atggtggtggtggcgttGGCGTGGTGGATTGGTTTGTATTTGGGTGACTTTTTATTGTCAGCAGTGGGGGACGATGGACGGGGTTTATTACGTACCGCCGagcaattgaaaattaaaggaCTCTGTGAGACAGCTGAGAACGCTGATGATTTAAATGACGCCGCCACAGCGACTATTACAGTCTCTGAGAATATACAGCAAGCGGTAGTTGGAAACATTGTGAATGCAACAACGATTGTGCCAGGCGCAGAATCACCCAATACAACGCAACAACAGTTACAAGTGCATCACCAGCAACAGATTGCAAcgcaacagcagcaaattGTAAATGCCTCCATATTAACAACACACGGCGGTCAGCTAACTACAACTGCTGGTGGTCAATTGATAAGTACAACGCAAACGGGAAGCATTattcaacagcagcaacttACACGCAAATCACGTGTACGTAAGCGTTCAAAAACACCGgaattgcaattgcaacagcaacagcagcaactacaacaacagcaactacaacaacagcatcaccAGCAACAAACACATCATCCTCAAACCATCCTCATACAAGGGCAAGATCAGACTTCAATTGTAAGTCTACAACATACATCCGGCGGAAGCTATATACCTGTATCCGGAGTACAAACAGTCAGTACAAGCATATCAGGTGGTGGGTCGAGTAGTAACAGCGGTACTCACGCACAAGCCATTGCACAAGCTGACGAAGATTCAGACGACGCAGATAAGCCTACATTGCAAAAGATCTGTAAAACAGAAACGTCAGCTACATCACCAGCATCACCATCGTCAATACCACATAATGCTACTGGCATAGGTAGTGGTGGAGGAATAACCACAGTggcagcatcaacatcaacaggcGGTAACGGCGGCAGCAGTGGCGGAGGAGGCGGACCATCAGGAACAGCGATTGTAACGCAAATTGTAGTAGCGCGCGacggaaaagaaaagaatatgaCTAGTTTAGGCATGGGCATGAATGGAGGCCTGCTAGGCGTGCCTATGGGATTTTTGGATTTTACACCCGAACCACCAGCACCATCAGCCACACCAGTCACCGTTACGGAACACGTCGATCTCTCCTGCAATCCCAGTACGGATACACGTGATCTATCAAatCCCACCGAACCGCTTGATATTGATAATCATTTGGCCCAACATATACATCGGCTCGATCAATCTCCAATGCACTCCATCACACATCATCAAACCAGCGACGAGAGCAATTCAAATCTCGTGCAACACATCAAAAGTGAGGTAATTGAGGCAAAGCAACTAGCAGCAGCACAGCAACAAGCAGCTGCCCAACATGCGGCAGCTGCGGCTGCCGctcagcaacatcatcaagcgcaacaacatcaattgcATGCCCAGCAATTGGTTGCGCAGGCACATtcacaacaacaccaacaacaacaacagcagcagcagcaacaggcGTCACATCAGCAACACGCTCAGACGCCGCATCCGGAATTGGGAGGTGGTACTGTAATGGAGATTGATCCAAGCCAAATAAAACATGAACCGGGAATGATTATAACTCCGGAGATTGTTAATATGATGACCACTGGGCACATGGatatgTACAATTCTGATACAAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAAAATGAGCCGCACTATACGAATTTGGATCAACAACATGGAGGTGGGGGCAGCGGCGGTGCTGGTGGTGTCGGTGGTGGTGATGTGAAAGGTCAGTTTAATGGTCCTAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAATATGAGCCTGACGAAAGCATCTACCACCTATGGCATACCGTCAACCACTCTCTGGCAACGTGCTCATCGCATGGGCATTGAAACGCCAAAGAAGGAAGGTGGCACAAAATCATGGAATGAAGATGCATTAAATAATGCCTTGGAAGCACTACGATCTGGACAAATATCGGCGAATAAAGCGTCAAAAGCCTTCGGAATACCATCATCGACGTTGTATAAGATTGCACGTCGAGAGGGTATACGGTTGGCGGCGCCCTTCAATGCCGCACCAACCACATGGACCCCCGAGGACTTGGAGCGTGCATTGGAGGCAATTCGTGCTGGTAATACGTCCGTCCAGAAAGCAAGTGCTGAATTTGGTATACCAACAGGAACACTTTATGGACGCTGCAAGCGTGAAGGTATAGAACTCTCCCGGTCAAATCCAACGCCGTGGTCTGAAGAAGCCATGAACGAAGCATTAAATTCAGTGCGTGTCGGTCATATGTCCATCAACCAGGCGGCGATACATTTTAACCTTCCCTACAGCTCGCTTTATGGTCGTTTTAAACGGGGCAAGTATGATGTTTCTAATACGAGTGGTTCCGCGATAAACAATACTTCGGGCAATACATCCGGCAGCATTGAGATTATCGAGCATAGCCAAGAGAATTCTTTGCAtatgttgcaacaacaattccCATATAGCCCATCGCCGCATCAGCAGACACCTCAGCATCACAGCACGCCATTGCCACAACCTCAGACCCCACAACATTTGCAGCAACATGTCGTGCATCTGCAGCAACAATCACAACATCATCAGCCACATGCCTCACAGCAGCAACATATCTCACAACAAGATGTTGTTACATCAAGCAGCCAAATTGTACATGCCggacaacagcagcaccaacagcagcagatcCAACAGATCTATCAACATCATGGCACGCCCGAGAGAAGTTGA
- Protein Sequence
- MVVVALAWWIGLYLGDFLLSAVGDDGRGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATTIVPGAESPNTTQQQLQVHHQQQIATQQQQIVNASILTTHGGQLTTTAGGQLISTTQTGSIIQQQQLTRKSRVRKRSKTPELQLQQQQQQLQQQQLQQQHHQQQTHHPQTILIQGQDQTSIVSLQHTSGGSYIPVSGVQTVSTSISGGGSSSNSGTHAQAIAQADEDSDDADKPTLQKICKTETSATSPASPSSIPHNATGIGSGGGITTVAASTSTGGNGGSSGGGGGPSGTAIVTQIVVARDGKEKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHIHRLDQSPMHSITHHQTSDESNSNLVQHIKSEVIEAKQLAAAQQQAAAQHAAAAAAAQQHHQAQQHQLHAQQLVAQAHSQQHQQQQQQQQQQASHQQHAQTPHPELGGGTVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGGGSGGAGGVGGGDVKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASTTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDALNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEEAMNEALNSVRVGHMSINQAAIHFNLPYSSLYGRFKRGKYDVSNTSGSAINNTSGNTSGSIEIIEHSQENSLHMLQQQFPYSPSPHQQTPQHHSTPLPQPQTPQHLQQHVVHLQQQSQHHQPHASQQQHISQQDVVTSSSQIVHAGQQQHQQQQIQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01195920;
- 90% Identity
- iTF_00061032;
- 80% Identity
- -