Acom027535.1
Basic Information
- Insect
- Amiota communis
- Gene Symbol
- -
- Assembly
- GCA_037043315.1
- Location
- JBAMAV010001581.1:8485272-8489203[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.8e-11 8.4e-08 32.7 0.0 1 38 558 596 558 601 0.89 2 4 6.5e-14 1.9e-10 41.1 0.1 2 39 613 650 612 653 0.94 3 4 1.4e-17 4.2e-14 52.8 0.0 1 45 667 712 667 712 0.98 4 4 5.9e-19 1.8e-15 57.2 0.0 1 45 719 764 719 764 0.97
Sequence Information
- Coding Sequence
- atgattttcttgTCTTGCATTTACTTTAAGGGCCTGTTACGTACCGCCGagcaattgaaaattaaaggACTCTGTGAGACAGCGGAGAACGCTGATGATTTAAATGACGCCGCCACAGCGACTATCACCGTCTCTGAGAATATACAACAAGCGGTAGTTGGGAACATTGTGAATGCAACAACGATTGTGCCAGGCGCAGAATCACccaatacaacacaacaacagttgCAAGTGCATCACCAGCAACAGATTGCAacgcaacagcagcagcagattgCAAATGCCTCTATATTAACAACACACGTCGGACAGCTAACTACAACTGCTGGTGGACAATTGATAAGTACAACGGCAGGCATTattcaacagcagcaacttACACGCAAATCCCGTGTACGTAAGCGTTCAAAATCACCggaattgcaattgcaacagcagcagcagcaacaacaacaacaacaacagcagcagcatcatcaacaacaacaaacacatcaTCCTCAAACCATCCTCATACAAGGGCAAGATCAGACTTCAATTGTTAGTCTACAACATACATCTGGCGGAAGCTATATACCTGTATCCGGAGTACAAACAGTTAATACAAGCATAGCAGGTGGTGGCTCGAGTGGTAACAGCGGTACGCACGCACAGGCCATTGGACAAGCTGACGAAGATTCGGACGACGCAGATAAGCCTACATTGCAAAAGATCTGTAAAACAGAAACGTCAGCTACATCACCAGCTTCACCGTCTTCGATACCAAATAATGCTACTAGCATAGGTAGCGGTGGAGTAGTAACCACAGTggcagcatcaacatcaacaggtGGTAACGGCAGCGGCAGTGGCGGAGGAGGCGGACCATCAGGGACAGCGATTGTAACGCAAATTGTAGTAGCGCGCGacggaaaagaaaagaatatgaCTAGTTTAGGCATGGGCATGaATGGAGGCCTGCTAGGCGTGTCTATGGGATTTTTGGATTTTACACCCGAACCACCAGCACCATCAGCCACACCAGTCACCGTTACGGAACACGTCGATCTCTCCTGCAATCCCAGTACGGATACACGTGATCTATCAAATCCCACCGAAGCGCTAGATATTGATAATCATTTGGCCCAACATATACATCGGCTCGATCAATCTCCAATGCACTCCATCACACATCATCAAACCAGCGACGAGAGCAACTCAAATCTCGTGCAACACATTAAAAGTGAGGTAATTGAGGCGAAGCAACTAGCGGCAGCACAGCAACAAGCAGCTGCCCAACATGCGGCAGCTGCTGCCGCCGctcagcaacatcatcaagctcaacaacatcaattgcATGCCCAGCAATTGGTTGCGCAGGCAcattcacaacaacaacagcagcaacaacaggcGACACATCAGCAGCACTCACAGACGCCGCATCCGGAATTGGGCGGTGGCACTGTAATGGAGATTGATCCAAGCCAAATTAAACATGAACCTGGGATGATTATAACGCCGGAGATTGTTAACATGATGACCACTGGGCACATGGatatGTACAATTCTGATACTAGCGAGGACTCAATGATGATCGCCAACGGTTCTCCGCACGATCAAAATGAGCCACACTATACAAATTTGGATCAACAACATGGAGGTGGTCAGTTTAATGGTCCTAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAATATGAGCCTGACGAAAGCATCTACCACCTATGGCATACCGTCAACCACTCTCTGGCAACGTGCTCATCGCATGGGCATCGAAACGCCAAAGAAGGAAGGTGGCACAAAATCATGGAATGAAGATGCATTAAATAATGCCTTGGAAGCACTACGTTCTGGACAAATATCGGCGAATAAAGCGTCAAAAGCCTTCGGAATACCATCATCGACGCTGTACAAGATTGCACGTCGAGAGGGTATACGATTGGCGGCGCCCTTCAATGCCGCACCAACCACATGGACCCCCGAGGACTTGGAGCGTGCATTGGAGGCAATTCGTGCCGGTAATACGTCCGTCCAAAAAGCAAGTGCTGAATTTGGTATACCAACAGGAACACTTTATGGACGTTGCAAGCGTGAAGGTATAGAACTCTCCCGGTCAAATCCAACGCCATGGTCTGAAGATGCCATGAACGAAGCATTAAATTCAGTGCGTGTCGGTCACATGTCCATCAACCAGGCGGCGATACATTTTAACCTTCCCTACAGTTCACTATATGGACGTTTTAAACGGGGCAAGTATGATGTTTCTAATACGAGTGGTACCGCGATAAACAATACTTCGGGCAATACATCCGGCAGCATTGAGATTATCGAGCATAGCCAAGAGAATTCTttgcatatgttgcaacaacaattcCCATATAGCCCATCACCGCATCAGCAGACACCTCAGCATCACAGCACGCCATTGCCGCAACCTCAAACCCCACAACATTTGCAGCAACATGTTGTGCAtctgcaacaacaatcacaacatCATCAGCCACATGGCTCACAGCAGCAACATATCTCACAACAAGATGTTGTCACATCAAGCAGCCAAATTGTACATGCcggacaacagcaacaacagcagcagatcCAACAGATCTATCAACATCATGGCACGCCCGAGAGAAGTTGA
- Protein Sequence
- MIFLSCIYFKGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATTIVPGAESPNTTQQQLQVHHQQQIATQQQQQIANASILTTHVGQLTTTAGGQLISTTAGIIQQQQLTRKSRVRKRSKSPELQLQQQQQQQQQQQQQQHHQQQQTHHPQTILIQGQDQTSIVSLQHTSGGSYIPVSGVQTVNTSIAGGGSSGNSGTHAQAIGQADEDSDDADKPTLQKICKTETSATSPASPSSIPNNATSIGSGGVVTTVAASTSTGGNGSGSGGGGGPSGTAIVTQIVVARDGKEKNMTSLGMGMNGGLLGVSMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQHIHRLDQSPMHSITHHQTSDESNSNLVQHIKSEVIEAKQLAAAQQQAAAQHAAAAAAAQQHHQAQQHQLHAQQLVAQAHSQQQQQQQQATHQQHSQTPHPELGGGTVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGGQFNGPKTWTQDDMNSALDALKNQNMSLTKASTTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDALNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGHMSINQAAIHFNLPYSSLYGRFKRGKYDVSNTSGTAINNTSGNTSGSIEIIEHSQENSLHMLQQQFPYSPSPHQQTPQHHSTPLPQPQTPQHLQQHVVHLQQQSQHHQPHGSQQQHISQQDVVTSSSQIVHAGQQQQQQQIQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01195920;
- 90% Identity
- iTF_00061860; iTF_00062682;
- 80% Identity
- -