Amin010226.1
Basic Information
- Insect
- Amiota minor
- Gene Symbol
- -
- Assembly
- GCA_037043295.1
- Location
- JBAMAW010001356.1:279815-289394[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.8e-11 7.9e-08 32.5 0.0 1 38 634 672 634 677 0.89 2 4 6.5e-14 1.8e-10 41.0 0.1 2 39 689 726 688 729 0.94 3 4 2.4e-17 6.6e-14 52.0 0.0 1 45 743 788 743 788 0.97 4 4 6.9e-19 1.9e-15 56.9 0.0 1 45 795 840 795 840 0.97
Sequence Information
- Coding Sequence
- ATGGATCGGCAcctgtatgtgcatataatgCAGGAGATAATGCTGCCATATGCTAGTGAAGAAATGCCACTGATTTGGGAGCTTCAGCAAGACAATGACCCTAAGCATACAAGCAAAGTTGCCAAACAGTGGTTGCAGGCCAACGGAATAAATGTACTAGAATGGCCTGCACAGTCGCCAGATCTCAAcccaattgagaatttgtggtGCGACGTGAAGAATGAAGTTGCCAAACGTCTACCCAATAATGTTCAACAGCTTTGGGAAGCAGGTCTGTTACGTACCGCCGagcaattgaaaattaaaggactctGTGAGACAGCTGAGAACCCTGATGATTTAAATGACGCCGCCACAGCGACTATCACCGTTTCTGAGAATATACAACAAGCGGTAGTTGGGAACATTGTGAATGCAACTACGATTGTGCCAGGCGCAGAATCACCCAATACAACGCAACAACAGTTACAAGTGCATCACCAGCAACAGATTGCAGCGCAACAACAGCAGATTGCAAATGCCTCCATATTAACAACACACGGCGGACAGCTAACTACAACTGTTGGTGGACAATTGATAAGTACAACGTCAACGGCAAGCATAAttcaacagcagcaacttGCACGCAAATCACGTGTACGCAAGCGTTCAAAATCACCGGAATTGCaattgcagcagcagcagcagcagcaccagcaccagcagcaacagcaacaacagcatcaccagcaacaacaaacacatcaTTCTCAAACAATCCTCATACATGGGCAAGATCAGACTTCAATTGTAAGTCTACAACATACATCCGGCGGAAGCTTTTTACCTGTATCCGGAGTACAAACTGTCAGTACAAGCATAGCAGGTGGTGGGTCGAGTGGTAACAGCGGCACGCACGCACACGGCATTGAACAGCCTGACGAAGATTCGGACGACGCAGATAAGCCTACATTGCAAAAGATTTGTAAAACGGAAACGTCAGCTACATCACCAGCATCACCATCGTCGATACCAAATAATGCTACCGGCATAGGTAGTGGTGGAGGAGTGACCACAGTgacagcatcaacatcaacaggtGGTAACGGCAGCGGCAGTGGCGGACCATCAGGGACAGCGATTGTAACGCAAATTGTAGTAGCGCGCGacggaaaagaaaagaatatgaCTAGTTTAGGCATGGGCATGaaTGGAGGCCTGCTAGGCGTGCCTATGGGATTTTTGGATTTTACACCCGAACCACCAGCACCATCAGCCACACCAGTCACCGTTACGGAACACGTCGATCTCTCCTGCAATCCCAGTACAGATACACGTGATCTATCAAATCCCACCGAAGCGCTTGATATTGATAATCATTTGGCCCAACATATACATCGGCTCGATCAATCTCCAATGCACTCCATCACACATCATCAAACCAGCGACGAGGAGCAACTCAAATCTCGTGCAACACATCAAAAGCGAGCTGCTGCAGCCGctcagcaacatcatcaagcGCAGCAACATCAATTGCATGCCCAGCAATTGGTGGCGCAGGCacattcacaacaacaacagcagcagcaacaacaggcGACACATCAGCAGCACGCACAGACGCCGCATCCGGAATTAGGCGGTGGCACTGTAATGGAGATTGATCCAAGCCAAATTAAACATGAACCGGGGATGATTATAACGCCGGAGATTGTTAATATGATGACCACTGGGCACATGGatATGTACAATTCTGATACAAGCGAGGACTCAATGATGATAGCCAACGGTTCGCCGCATGATCAAAATGAGCCACACTATACAAATTTGGATCAACAACATGGAGGTGGTGGCAGCGGCGGTGCTGGTGGTGTCGGTGGTGGTGATGTGAAAGGTCAGTTTAATGGtcctaaaacttggacacaaGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTACCACCTATGGCATACCGTCAACCACTCTGTGGCAACGTGCTCATCGCATGGGCATCGAAACGCCAAAGAAGGAAGGTGGCACAAAATCATGGAATGAAGATGCATTAAATAATGCCCTGGAAGCACTACGTTCTGGACAAATATCGGCGAATAAAGCGTCAAAAGCCTTCGGTATACCATCATCGACGCTGTACAAGATTGCACGTCGAGAGGGTATACGATTGGCGGCGCCCTTCAATGCCGCACCAACCACATGGAGCCCCGAGGACTTGGAGCGTGCATTGGAGGCAATTCGTGCCGGTAATACGTCCGTCCAAAAAGCAAGTGCTGAATTTGGTATACCAACAGGAACACTTTATGGACGCTGCAAGCGTGAGGGTATAGAACTGTCCCGGTCAAATCCAACGCCGTGGTCTGAAGAGGCCATGAACGAAGCATTGAATTCAGTGCGTGTCGGCCACATGTCCATCAACCAGGCGGCGATCCATTTTAACCTTCCCTACAGCTCGCTATATGGTCGTTTTAAACGGGGCAAGTATGATGTTTCTAATGCGAGTGGCACCGCGATAAACAATACTTCGGGCAATACATCCGGCAGCATTGAGATTATCGAGCATAGCCAAGAGAATTCTTTGCAtatgttgcaacaacaattccCATATAGCCCATCGCCGCATCAGCAGACACCCCAGCATCACAGTACGCCATTGCCGCAACCTCAGACCCCACAACATTTGCAGCAACATGTCGTGCATCTGCAGCAACAatcacaacatcatcagccACATGCCTCACAGCAGCAACATATCTCACAACAAGATGTTGTCACATCAAGCAGTCAAATTGTACATGCcggacaacagcaacaacaacagcagatcCAACAGATCTATCAACATCATGGAACGCCCGAGAGAAGTTGA
- Protein Sequence
- MDRHLYVHIMQEIMLPYASEEMPLIWELQQDNDPKHTSKVAKQWLQANGINVLEWPAQSPDLNPIENLWCDVKNEVAKRLPNNVQQLWEAGLLRTAEQLKIKGLCETAENPDDLNDAATATITVSENIQQAVVGNIVNATTIVPGAESPNTTQQQLQVHHQQQIAAQQQQIANASILTTHGGQLTTTVGGQLISTTSTASIIQQQQLARKSRVRKRSKSPELQLQQQQQQHQHQQQQQQQHHQQQQTHHSQTILIHGQDQTSIVSLQHTSGGSFLPVSGVQTVSTSIAGGGSSGNSGTHAHGIEQPDEDSDDADKPTLQKICKTETSATSPASPSSIPNNATGIGSGGGVTTVTASTSTGGNGSGSGGPSGTAIVTQIVVARDGKEKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQHIHRLDQSPMHSITHHQTSDEEQLKSRATHQKRAAAAAQQHHQAQQHQLHAQQLVAQAHSQQQQQQQQQATHQQHAQTPHPELGGGTVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGGGSGGAGGVGGGDVKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASTTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDALNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEEAMNEALNSVRVGHMSINQAAIHFNLPYSSLYGRFKRGKYDVSNASGTAINNTSGNTSGSIEIIEHSQENSLHMLQQQFPYSPSPHQQTPQHHSTPLPQPQTPQHLQQHVVHLQQQSQHHQPHASQQQHISQQDVVTSSSQIVHAGQQQQQQQIQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01195920;
- 90% Identity
- iTF_00061032;
- 80% Identity
- -