Snig004062.1
Basic Information
- Insect
- Stegana nigrithorax
- Gene Symbol
- -
- Assembly
- GCA_037044495.1
- Location
- JBAMBQ010001874.1:18892-23877[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.9e-11 5e-08 32.6 0.0 1 38 584 622 584 627 0.89 2 4 6.6e-14 1.2e-10 41.1 0.1 2 39 639 676 638 679 0.94 3 4 1.4e-17 2.5e-14 52.8 0.0 1 45 693 738 693 738 0.98 4 4 7e-19 1.2e-15 57.0 0.0 1 45 745 790 745 790 0.97
Sequence Information
- Coding Sequence
- ATGCCGCTGATTTGGGTCTTTCAAATGGACTATGACCCTaagcatacaaataaattggCCAAACAGTGGTTTCAGGCCAACGAGGGCAATTCTTTAATAGTGGGTTCGgGTCTGCTACGCACCGCGGAACAGTTGAAAATTAAAGGACTCTGCGAAACAGCCGAAAATGCTGATGACTTAAATGACGCCGCGACAGCGACAATAACGGTCTCTGAGAATATTCAGCAAACTGTTGTTGGAAATATTGTGAACTCGGCGATTGTGCCGGGATCTGAGTCTCccaacacacagcagcagttgcaggtgcaacaccaccaacagcagcagcaacaacagcaacatcaacaacagcaacaaattgcaaacgCTGCTATACTGTCCCAACACGCTTTAGCGAATACCGCGCAGCTAACAACTGCTGGTGGGCAATTGATCGCCGCAGCGCCATCCACAAGTAATAGCatactgcaacagcagcagcagatatcACGGAAATCACGCGTGCGAAAGCGTTCAAAATCGCCAGATCTACAGCATCaaattcaacagcaacagcagcagcaacatcagcatcacGCGCATCCGCACGCGCAAACTATACTCATTCAGGGACAGGATCAGTCATCGATAGTCAGTCTGCCACATAACGCTGTTGGCAGTTATATACCAGTTTCGGGAGTACAGACGGTAACCACGAATATAACTAGTggacagcagcacacacagacCGCGGGAGGTGACGACGACTCATTGGACGACACGGATAAGCCAACGCTACagaaaatttgcaaaacgGAAACGTCTGTCGCATCGCCGGCATCAACATCGTCGACGTCGAATAATGCAAACGTGGGTAGTGGCCCAGGAGGAGCGGGAGTGACGACGGTTGCAGCACCGGGCACAGCGATTGTAACACAAATTGTAGTAGCACGCGacggaaaagaaaagaatatgaCTAGTTTAGGCATGGGCATGAATGGAGGCCTGCTAGGCGTGCCCATGGGATTCTTGGACTTTACACCGGAACCACCAGCACCATCAGCCACACCAGTCACCGTAACAGAACACGTTGATCTCTCCTGCAACCCTAGTACGGATACACGAGATCTATCAAATCCCACCGAACCACTCGATATCGACAATCATTTGGCGCAGCATATTCATAGGCTCGATCAATCTCCAATGCACTCCATCACGCATCATCAAACCGGCGACGAGAGCAATTCAAATCTCGTGCAGCATATTAAAAGCGAAGTGATTGAGGCCAAGCATTTGGCTCAGCAACAGGCGGCAGCTGCGGCGGCTGCCCAACACGCCgctgtgcagcagcaacatcatcaagcccagcaacagcaacaccagttGCATGCCCAGCAGTTGGTGGCGCAGGCACAAtctcagcaacagcatcaacatcagcagcagctagCACATCCACCGCATCAACATGCGCCACAGTCGTCACATCTGGAACTAGCGGGTGGCACTGTAATGGAGATTGATCCGAGCCAAATTAAACATGAGCCAGGCATGATTATCACGCCTGAGATTGTCAATATGATGCCTACGAGTCATATGGATATGTATAATTCTGATACCAGCGAAGACTCAGTGATGATCAACGGTTCGCCGCACGATCAGAATGAGCCTCACTATACAAATTTGGATCAGCAGCATGGCGGTGCTGGTGGTGTCAGTGGTGGTGGTGCTGGTGAGATGAAAGGTCAGTTTAATGGTCCTAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAATATGAGCCTGACGAAAGCATCCACCACCTATGGCATACCGTCGACCACTCTCTGGCAGCGTGCTCACCGTATGGGCATTGAAACGCCAAAGAAGGAAGGCGGAACCAAATCATGGAATGAAGATGCGTTAAATAACGCTTTGGAAGCATTGCGTTCCGGACAGATATCGGCGAATAAAGCGTCTAAAGCCTTTGGTATACCCTCATCGACGCTGTACAAGATCGCACGCCGTGAAGGTATACGTTTGGCTGCGCCCTTCAATGCCGCTCCAACCACGTGGACCCCTGAAGACTTGGAGCGTGCATTGGAGGCTATACGCGCCGGTAATACGTCCGTACAAAAAGCAAGCGCTGAGTTCGGCATACCAACAGGAACTCTCTATGGTCGCTGCAAACGTGAGGGCATTGAACTGTCACGCTCAAATCCGACGCCTTGGTCTGAGGAAGCGATGAACGAAGCCTTAAACTCGGTGCGTGTTGGCCACATGTCTATCAATCAGGCGGCAATACACTTTAACCTGCCTTATAGTTCTTTATATGGAAGGTTCAAACGAGGAAAATATGACGTTTCTAATACTAGTGGTATTTCGCTCAACAACACTACAGGCAACACATCCGGCAGTATTGAGATAATTGAACATAGTCAGGAAAATTCTttgcATATGTTGCAGCAACAGTTCCCATACAGCCCGTCACCGCATCAACAACCACCGCAACATCACAGCACACCTCACCAGCCGCAGACGTCGACACATTTGCAACAGCATGTGGTACatctgcagcaacagcatcagcctCACGCCCAGCAGCAACATATTTCACAACAGGAAGTCGTTACATCGAGCAGCCAAGTCGTGCATACtggacagcaacaacagcaaatccaGCAAATCTATCAGCATCACGGCACACCTGAAAGAAGTTGA
- Protein Sequence
- MPLIWVFQMDYDPKHTNKLAKQWFQANEGNSLIVGSGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQTVVGNIVNSAIVPGSESPNTQQQLQVQHHQQQQQQQQHQQQQQIANAAILSQHALANTAQLTTAGGQLIAAAPSTSNSILQQQQQISRKSRVRKRSKSPDLQHQIQQQQQQQHQHHAHPHAQTILIQGQDQSSIVSLPHNAVGSYIPVSGVQTVTTNITSGQQHTQTAGGDDDSLDDTDKPTLQKICKTETSVASPASTSSTSNNANVGSGPGGAGVTTVAAPGTAIVTQIVVARDGKEKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHIHRLDQSPMHSITHHQTGDESNSNLVQHIKSEVIEAKHLAQQQAAAAAAAQHAAVQQQHHQAQQQQHQLHAQQLVAQAQSQQQHQHQQQLAHPPHQHAPQSSHLELAGGTVMEIDPSQIKHEPGMIITPEIVNMMPTSHMDMYNSDTSEDSVMINGSPHDQNEPHYTNLDQQHGGAGGVSGGGAGEMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASTTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDALNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEEAMNEALNSVRVGHMSINQAAIHFNLPYSSLYGRFKRGKYDVSNTSGISLNNTTGNTSGSIEIIEHSQENSLHMLQQQFPYSPSPHQQPPQHHSTPHQPQTSTHLQQHVVHLQQQHQPHAQQQHISQQEVVTSSSQVVHTGQQQQQIQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01195920;
- 90% Identity
- -
- 80% Identity
- -