Poka012700.2
Basic Information
- Insect
- Phortica okadai
- Gene Symbol
- lolal
- Assembly
- GCA_034638295.1
- Location
- CM067851.1:2039392-2064396[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.9e-11 6.6e-08 32.5 0.0 1 38 649 687 649 692 0.89 2 4 1.1e-13 1.5e-10 40.9 0.1 2 39 704 741 703 744 0.94 3 4 2.4e-17 3.3e-14 52.7 0.0 1 45 758 803 758 803 0.98 4 4 1e-18 1.4e-15 57.1 0.0 1 45 810 855 810 855 0.97
Sequence Information
- Coding Sequence
- ATGGCAGCAGTGCGAGGGCATCAATATTTCAGTCTTCGCTGGAATAACTATCAGAACACAATGACATCAGTGTTCCAACAACTACGTGAGGATCTTTCTTTCGTCGACGTGACCTTGTCATGTGAGCATGGCTCGCTCAAGGCGCATAAGGTTGTGCTCTCCGCCTGCTcttcatattttcaaaaattattgcTGGAGAATCCGTGCAAACATCCAACTATTATTTTACCAGGCGATATCATATTCACAGATCTTAAgacaattattgattttgtctATCGCGGCGAAATCGATGTAACGGAGTCAGAGCTACAGGGCTTATTACGTACCGCCGAacagttaaaaattaaaggacTCTGTGAGACAGCTGAGAACGCAGACGATTTAAACGACGCCGCCACTGCGACAATCACCGTCTCCGAGAATATACAGCAAGCCGTGGTTGGCAATATTGTTAATGCGACCATAGTTCCAGGCGCTGAATCGCctaatacacaacaacaactgcaggtGCAACAtcaccagcagcaacagcagttaGTCCAACAGCAACTTGGTAACTCTACGGTGCTAACGCAACACGCAATTTCAGCGAGTAGTGCGCAATTGGCAACTGCTGGTGGTCAATTGATAGCCACGACACCAACAAGCATCGGACAGCAACTGCAGCAGCCGCCGCGTAAGTCGCGTGTTCGTAAGCGTTCAAAGTCGCCTGATctgcaattgcaacaacaacatcagcagcagcagcagcaacagcaccaacaacagcaggcaCATTCACAATCCCAACAACATCATCCGCAAACTATACTCATACAAGGGCAAGATCCGACATCTATTGTCAGTCTGCAACATACTGCCGGTGGCAGTTATATACCTGTCTCAAGCGTACAGACCGTAACCACAAGTTTGGCTGGTGGAGCGCACATACAGACCATTGCAGCGACAGTGTCAGCAGTTACAGACGAGGATTCAGATCAAGCGGACAAGCCAACATTGCagaaaatttgcaaaacaGAGCAATCGGCCACATCGCCGGTATCTACATCGTCGACCTCGAATAATGCAACTGGACCAGGTGGTGTAACCACAGTGGCAGCAACATCTGCAGGCGTACCGGGCACAGCGATTGTAACACAAATTGTAGTAGCGCGTGacggaaaagaaaaaaatatgactAGTTTAGGCATGGGCATGAATGGAGGCCTATTAGGCGTGCCCATGggatttttggattttacaCCCGAACCACCAGCACCGTCAGCCACACCAGTCACCGTAACGGAACACGCAGATCTCTCTTGTAATCCCAGCACCGACACACGAGATCTGTCAAATCCCACCGAACCACTTGACATCGACAATCATTTAGCCCAACAAATACACCGACTCGATCAATCTCCAATGCATTCAATCGCTCATCATCAAACCGGCGATGAAAGTAACTCGAACCTGGTGCAACAGATTAAAAGTGAAGTAATTGAGGCAAAGCAACTGGCGGCGCAACAACAGGCAGCCGCACAGCATGCCGCCCAACAACATCACCAAGTGCAGCAACACCAACTGCATGCCCAGCAACTGGTCACCCAGGCGCATTCTCAGCCTCAccagcatcaacaacatcagcaggtACATCAACAACATGCACCGCCATCGCATTCAGAGTTGTCAGGTGGCACTGTAATGGAGATTGATCCGAGCCAAATAAAACATGAACCGGGCATGATTATAACGCCTGAAATTGTGAACATGATGACCACTGGGCATATGGATATGTATAATTCTGATACGAGCGAAGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCACACTACACGAATTTGGATCAGCAGCATGGCGGGAGCGGTGCtggtggtggcggtggtggtgagATGAAAGGTCAGTTTAATGGTCCTAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAATATGAGCCTGACGAAAGCATCCACCACCTATGGAATACCGTCAACCACACTCTGGCAACGTGCTCACCGCATGGGCATTGAAACGCCAAAGAAGGAAGGCGGCACAAAATCATGGAATGAAGATGCATTGAATAATGCGTTGGAAGCTCTACGGTCTGGACAGATATCAGCGAATAAAGCATCCAAAGCCTTTGGTATACCATCTTCGACGCTGTATAAGATTGCACGTCGAGAGGGTATTCGTTTGGCTGCGCCCTTCAATGCCGCTCCTACTACGTGGACACCCGAGGACTTGGAGCGTGCATTGGAGGCCATACGAGCTGGTAACACATCCGTCCAAAAAGCTAGTGCTGAATTTGGTATACCGACAGGGACTCTTTATGGACGTTGCAAACGTGAGGGCATCGAGTTATCGCGATCAAACCCAACGCCCTGGTCCGAGGATGCAATGAATGAAGCATTAAACTCAGTACGTGTTGGCCACATGTCCATTAACCAGGCGGCAATACACTTCAACCTACCTTACAGTTCTCTCTACGGCCGTTTTAAACGTGGCAAGTATGATGTTTCTAATGCCAGTGGAACATCGTTGAATAATACTTCGGGCAATACATCTGGCAGCATTGAGATTATTGAACACAGCCAGGAGAATTCTTTGCATATGTTGCAGCAACAGTTCCCTTACAGTCCATCGCCTCATCAGCATCCACCGCAACATCACAGCACACCTCAGCAAACTCAAACTTCGCAGCACTTGCAGCCACATGTCGTTCatctgcagcagcaacagcaaccacaACACCATCAATCACATGCTCAACAGCAACATATCTCACAACAAGAAGTCGTCACCTCAAGCAGCCAAATCGTTCATACcggacaacaacagcaacagcaacaacaacagcaacaaatccAACAAATATATCAGCACCATGGTACGCCCGAAAGAAGTTGA
- Protein Sequence
- MAAVRGHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSSYFQKLLLENPCKHPTIILPGDIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGAESPNTQQQLQVQHHQQQQQLVQQQLGNSTVLTQHAISASSAQLATAGGQLIATTPTSIGQQLQQPPRKSRVRKRSKSPDLQLQQQHQQQQQQQHQQQQAHSQSQQHHPQTILIQGQDPTSIVSLQHTAGGSYIPVSSVQTVTTSLAGGAHIQTIAATVSAVTDEDSDQADKPTLQKICKTEQSATSPVSTSSTSNNATGPGGVTTVAATSAGVPGTAIVTQIVVARDGKEKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHADLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHQTGDESNSNLVQQIKSEVIEAKQLAAQQQAAAQHAAQQHHQVQQHQLHAQQLVTQAHSQPHQHQQHQQVHQQHAPPSHSELSGGTVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGSGAGGGGGGEMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASTTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDALNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGHMSINQAAIHFNLPYSSLYGRFKRGKYDVSNASGTSLNNTSGNTSGSIEIIEHSQENSLHMLQQQFPYSPSPHQHPPQHHSTPQQTQTSQHLQPHVVHLQQQQQPQHHQSHAQQQHISQQEVVTSSSQIVHTGQQQQQQQQQQQIQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01195920;
- 90% Identity
- iTF_01195920;
- 80% Identity
- iTF_01195370;