Cind009032.1
Basic Information
- Insect
- Cacoxenus indagator
- Gene Symbol
- -
- Assembly
- GCA_035041755.1
- Location
- JAWNKX010000240.1:3796446-3802559[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.9e-11 5.6e-08 32.6 0.0 1 38 587 625 587 630 0.89 2 4 6.7e-14 1.3e-10 41.0 0.1 2 39 642 679 641 682 0.94 3 4 1.5e-17 2.8e-14 52.8 0.0 1 45 696 741 696 741 0.98 4 4 7.2e-19 1.4e-15 57.0 0.0 1 45 748 793 748 793 0.97
Sequence Information
- Coding Sequence
- ATGGTACGGTACGGCCCAAGTCTGCTCGAATTTGGACCTCAACTGGAGGGTTTATTGCGCACTGCCGAACAGTTGAAAATCAAGGGGCTCTGCGAGACAGCTGAGAACGCTGACGATTTGAATGACGCTGCAACAGCGACAATCACCGTATCTGAGAATATACAACAAGCTGTCGTTGGTAACATTGTGAACGCGACCATAGTGCCGGGTGCGGAGTCACCTAATACGCAACAACAGTTGCAGATACAGCACcaccatcagcagcagcaacagcaacagcagcagattgctcaacaacaacagcaacagcaacagcaacaacagcagattGCTAACGCTGCTGTGCTAACACAACACGCACAATTAGCAGCCGCTGGTGGTCAGTTGATAGCTACGACACCGACAAGTATttcacagcaacagcaacaacaacaacagcaacagcaacagcagcagcaacaacagctcaCACGCAAATCGCGTATACGTAAGCGTTCAAAATCGCCGGATTTACAATTgcaacagcatcagcatcaatCAGCacaccagcagcaacatcacCTACCACAGCAGCAGCCACTACCTCATCCGCATACCTTGCTCATAGGTCAAGATCCGACATCGATTGTCAATCTGCAGCATACGGCCGGCGGCACTTACATACCCGTATCAGGTGTACAGACTGTAACAACAAGCATTGCAAGCAGTGCCCAAGCGCAAGCCATCGCTGCGGCAGTTGCGGCAGTTGCGGCAGCCGCTGACGAAGACTCAGACGACGCGGACAAGCCGACGTTGCAGAAGATCTGCAAGACAGAACAATCAGTGGCGTCTCCGTCATCCTCGTCGTCGACATCGAATAATGCGAGTGGCGTCGGTGGTAGTGTGACCACAGTGGCAGGAACATCAGCAGGCGGATCGGGAACGGCGATTGTAACACAAATTGTAGTAGAGCGCGAcggaaaagaaaagaatatgaCTAGTTTAGGCATGGGCATGAATGGAGGCCTGCTAGGCGTGCCCATGGGATTTTTGGATTTTACACCCGAACCACCAGCACCATCAGCCACACCAGTCACCGTCACGGAACACGTCGATCTCTCCTGTAATCCCAGCACGGATACACGTGATCTATCAAATCCCACCGAACCGCTCGATATTGACAATCATTTGGCCCAGCAGATACACAGGCTTGATCAATCTCCAATGCACTCCATTGCGCACCATCAAACCGGCGATGAGAGCAACTCGAATCTCGTGCAGCACATCAAAAGCGAGGTGATTGAGGCAAAGCATCTGGcggcacagcaacaacatgctGCCCAACAGCATCACCAACCGCAACAGCATCAGTTGCATGCCCAGCAACTGGTCGCTCAGCAAGCACATTCGCATgcgcaacagcagcatcagcaacaccaacaccaacaacaccagcaacaccaacaggCGCACCAGCAACATGCGGCATCGTCGCATTCAGAGCTGGCCGGCGGTACTGTAATGGAGATTGATCCGAGCCAAATCAAGCACGAACCGGGCATGATTATTACGCCTGAGATCGTCAATATGATGACCACTGGGCACATGGATATGTACAACTCCGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAAAATGAGCCACATTACACGAATTTGGATCAACAGCATGTCATCAGCGGTGCTGGTGGTGGCGGTAGTGGTGAGATGAAAGGTCAGTTTAATGGTCCTAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAATATGAGCCTGACGAAAGCATCCACCACTTATGGCATACCGTCGACCACTCTCTGGCAACGTGCTCACCGTATGGGCATTGAAACGCCAAAGAAGGAAGGCGGCACAAAATCATGGAATGAAGATGCATTGAATAATGCCTTGGAAGCACTACGCTCCGGACAGATATCGGCGAATAAAGCGTCCAAAGCCTTTGGTATACCATCATCGACGCTGTACAAGATTGCACGTCGTGAGGGTATACGCTTGGCGGCGCCCTTCAATGCCGCACCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCAATACGCGCCGGTAATACGTCCGTCCAAAAAGCTAGTGCTGAATTTGGTATACCGACAGGAACGCTTTATGGCCGCTGCAAACGTGAGGGCATCGAGCTGTCACGCTCAAATCCAACGCCCTGGTCGGAGGAAGCAATGAACGAGGCATTGAATTCTGTGCGTGTTGGTCACATGTCCATCAATCAGGCGGCCATACACTTCAACCTGCCTTACAGTTCACTCTACGGCCGCTTCAAGCGCGGCAAGTACGATGTGTCCAATGCCAGCGGTACATCGTTGAACAATACCTCGGGCAACACATCTGGCAGCATTGAGATAATCGAGCACAGTCAGGAGAATTCTTTGCATATGCTGCAACAACAGTTCCCCTATAGCCCATCGCCGCATCAGCCTCCCCAACATCATAGCACACCTCAGCCACCACAGACACCACAGCACTTGCAGCAACATGTTGTGCacctgcagcagcagcagcagcagcaacaacaacagtcgcaccaccatcaggcacacgtccagcaacagcaacaacatatCTCGCCACAGGATGTCAGCTCGAGCAATCAAATTGTACACGCcggacagcagcaacaacagcaaattcaACAGATCTACCAACATCACGGCACGCCTGAGAGAAGTTGA
- Protein Sequence
- MVRYGPSLLEFGPQLEGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGAESPNTQQQLQIQHHHQQQQQQQQQIAQQQQQQQQQQQQIANAAVLTQHAQLAAAGGQLIATTPTSISQQQQQQQQQQQQQQQQQLTRKSRIRKRSKSPDLQLQQHQHQSAHQQQHHLPQQQPLPHPHTLLIGQDPTSIVNLQHTAGGTYIPVSGVQTVTTSIASSAQAQAIAAAVAAVAAAADEDSDDADKPTLQKICKTEQSVASPSSSSSTSNNASGVGGSVTTVAGTSAGGSGTAIVTQIVVERDGKEKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHQTGDESNSNLVQHIKSEVIEAKHLAAQQQHAAQQHHQPQQHQLHAQQLVAQQAHSHAQQQHQQHQHQQHQQHQQAHQQHAASSHSELAGGTVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHVISGAGGGGSGEMKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASTTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDALNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEEAMNEALNSVRVGHMSINQAAIHFNLPYSSLYGRFKRGKYDVSNASGTSLNNTSGNTSGSIEIIEHSQENSLHMLQQQFPYSPSPHQPPQHHSTPQPPQTPQHLQQHVVHLQQQQQQQQQQSHHHQAHVQQQQQHISPQDVSSSNQIVHAGQQQQQQIQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01195920;
- 90% Identity
- -
- 80% Identity
- -