Basic Information

Gene Symbol
-
Assembly
GCA_009193385.2
Location
NC:35603555-35622762[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 4.6e-06 0.00039 20.2 1.0 1 23 223 245 223 245 0.98
2 31 0.002 0.17 11.9 1.9 1 23 268 291 268 291 0.96
3 31 9.9e-05 0.0084 16.0 0.5 2 23 298 320 297 320 0.96
4 31 0.00054 0.045 13.7 0.9 1 21 340 360 340 361 0.94
5 31 0.002 0.17 11.9 0.1 2 23 473 494 472 494 0.96
6 31 0.011 0.91 9.6 0.3 1 23 500 523 500 523 0.91
7 31 8.7e-05 0.0073 16.2 0.1 1 23 592 615 592 615 0.96
8 31 0.0059 0.5 10.5 0.4 1 23 621 644 621 644 0.96
9 31 0.16 13 5.9 1.5 1 23 657 679 657 679 0.97
10 31 6.3e-05 0.0053 16.7 0.3 3 23 724 745 723 745 0.96
11 31 0.74 63 3.8 0.5 2 23 805 828 804 828 0.93
12 31 2.3 1.9e+02 2.3 0.0 2 23 837 859 837 859 0.84
13 31 0.054 4.6 7.4 0.1 2 23 866 888 865 888 0.93
14 31 9.6e-06 0.00081 19.2 1.2 1 23 896 918 896 918 0.98
15 31 0.13 11 6.2 0.1 2 23 968 991 967 991 0.95
16 31 0.00016 0.013 15.4 3.3 1 23 994 1017 994 1017 0.97
17 31 0.012 1 9.5 0.5 2 23 1024 1046 1023 1046 0.95
18 31 0.00052 0.044 13.8 4.8 1 21 1087 1107 1087 1108 0.94
19 31 0.002 0.17 11.9 1.8 2 23 1122 1143 1121 1144 0.93
20 31 0.64 54 4.0 3.1 1 23 1147 1169 1147 1170 0.95
21 31 0.0071 0.59 10.2 1.9 2 23 1177 1200 1176 1200 0.94
22 31 0.71 60 3.9 0.2 2 23 1208 1230 1208 1230 0.95
23 31 2.7 2.3e+02 2.1 0.0 2 23 1237 1259 1236 1259 0.87
24 31 0.17 14 5.9 2.7 2 23 1268 1290 1268 1290 0.96
25 31 0.19 16 5.7 0.8 2 23 1296 1318 1296 1318 0.93
26 31 0.084 7 6.8 0.5 1 23 1386 1409 1386 1409 0.96
27 31 0.016 1.3 9.1 2.0 1 21 1439 1459 1439 1460 0.92
28 31 0.24 20 5.4 1.9 2 23 1550 1572 1549 1572 0.94
29 31 0.5 42 4.4 0.4 2 23 1579 1601 1578 1601 0.95
30 31 0.13 11 6.3 1.8 1 23 1612 1634 1612 1634 0.97
31 31 0.023 2 8.6 0.1 1 20 1641 1660 1641 1662 0.93

Sequence Information

Coding Sequence
ATGGAGCAGAGGGAGAGGTACGACGAGCTCTGCAGGCTCTGCGCCTCGTACGATGCCGTCAAGATGGACATCTTCGGTCAGGAGGGCAAGAACCGACAGCTCGTCGACAAGATACAGACCTGCTTGCCGTTCAAGATAGCCGAGGACGATCGACTGCCGAAATGCCTTTGCTACAGATGCATGTACAATTTGGAGAACTTCTACGACTTCAGAACGGCTTGCGTCAACGCGGTCGCTATGCTGGAGCGATGTTTGCCACCCGACGCGACGAAGGTGGAGATCAAACAGGAGAACAACGACTCGTCCGAGCCGTATTCGGAGCTGCGGATGGAGCTGCTGAAGGACAAAGACACGGGAAACAGCTCCAGCGGGGGCATGTCGATGCTCATACCCGAGGCGCCGGTCGTCAATCCAAACGCGGCCCTCGGCACACCTCCCAGACTCAAGTCAGACGGCGAACCCGACAACGAGGAGATCGGAGACGCCGCTGCTGGCGATGAACGTCTGGAGGACCACGACAAGTCGGACGAGTACGAGATGGACATGGAGACGAACCCGAGCGACTTCCTGGAAATGAGCGCGCTCGTACCGGAAGAGGAGAGCGTCCTTCCAGCCCAGCAGCAGAATGCCGGCGTCTTCCAGCACCGTAACGAGCAACACGAGGTCTACGTCTGCTCGCTCTGCAACAAGGCTTTCAGCTCGAAGGGACATCTCTCGCTACACGCGAGGATACACGTTGGTGCCGGAGACGTGATCGGCGAGAAGGTCATCACGGACGATCACACTTCCTACAAGAGGCCGTACCAGTGCGACCTCTGCAACAAGTCCTACTCCACGGCGAAGCATCGCTGGGGACACGTTTCCACCACTCACAGGGGTCACCCAGCAGTGACGTGTGGCTACTGCTCGCGCATCTACTCGACGCGTACGAACCTCGAGGAGCACATAAAATCGCGCCATGCAGGTTTGCCACCGCCGCCGGAAATTCCGGCCCCTTACGTCCAGCCGGACTCGCGACATCAGTGCAAGACCTGCCCGAAGATGTACACCAACATTACCGATCTCAACAAGCACAGCCGCGTTTGCCTGGGCGAACAGCAACGCAAAGAGCAGCAGTCCAATAACAGTTTCAACCCACAGAACTTCGGTAAGAAAAATGCCATGTCCAAGCTTAAAAATGCCTTGGACCCGACGTCCGACTTATCTAGCATCGATTCCGACTATGAGAACAAAGATTACAGGAGCGCGGAAGCGAAACTTGCCAAAAATCCTCAGTTAACCATTCTCAAGCAGGCTCTCATCAAGGGCGACAGCGCGAAAAAGGAGTACGAGGAGAGGCAGAAAATGCTTAGCAAATCAAAGAAACAGGCCAATGCTActaataaagAAGGAGTGGATCCTGACGTGAAGAGATGGTACTGCGAGGTCTGCCCGTTGAACTTTGCGACGGTCGACGAGCTGAGGCAGCACGAAAAGTCCCACGACGCCGATAAGCCTTACATATGCATTCTTTGCGAGAAGGACTTTGTCCTAAAGTCGTCCCTTAGCAGGCACATACTCTCGTCTCACGGGGTCGATCCCACACCGCTAGTCGAGAGCGACAAATGTCTAAAGAAATCCGTGCAGGAAGCGAACATGCAACCGCCACTTATCAAAGAGGAACAGAACGTTACCAAAGAAAACTCTTCGTCGCCATTTTCTGCTGATAACATGGAGAATGACGAAGACGAGCACGAGAACGGCAACGACAACATGCTGGAGATTGAGACGGTCTTTGTCTGCGAGATCTGTACGCGCGACTTCAACGACCGAGCCTCGCTCTGGCTGCACATCCGCGCTACTCACAAAGAGTACGCGGCATTCGCTTGCGGCGTCTGTCTGAAGATTTGCTCAGACAACGCCCAACTGCTGAATCACGTAAACATGTATCACGGAGGTAACAAACTGCTGATGTCCGAGCAGCGTAGGTACAGCTGCACAGTATGCGGCCGACAGCACGACTCTCGCAAGAAGCTCATCACCCACGTGTCCATACACAACATCGATCCGAGCTACGATCCTGCGAACTTCGTGCAACTCAATACCAATTACTACAATGAAAATGTCAATAGCAACGAAGGCGGTAACGAGTTAATCATGGATTGCGATGATGAGAGCGAAAAGGCTGACTGTTATATCTGCTACAAGAGGTTCCCGAATGAAGACCAGCTCATCCGACATCAGAGGAATGCGCACAAGTCCGAGCAGTTGGTTGAAGTGGGTGGAAATGGCGGAGTTCCTGGTCAAAACGGTACCGGCAATCGCGCGCAGTATCACCTGTTTTTCGTTTGCGAGCTGTGCGGAAGTTCGCATCCCAGCAAGTGGGAGAGATGGCTGCACGTCAGCAGTATGCACGGCAACGAGCTTGCTATAAGGTGTGAACGCGACGACTGCGCCAAGATTTTCGCTACGAAAGCTCTGCGTAACGAGCACGCACAGCACCATCAATTGCAGGGCGCTTCACCCAACACCTGCGAGATCTGTGGAAAGCTCTGGGGCAGCCGAGTTGACTACTGGAAGCACGTGATGGGTGTCCACGCAGACACGGTACCGCTCATCTGTGGTGTCTGTCTCAAGGTGTTCCCTGACGTGATGCAGCTCAGTCAACACGTCAAGTTGAAGCACTGGCCGTTGACCAATGGTGACTTCAGCTGCGACATTTGCGGAAGACCGTATTCCAACAAGAGCAAAATGTCGAGGCATAGGAAGATTCACGGACTCGATGGAGAAGTTTATAATCCGTCGGCTACTAACAGTAGTTTGATAATCAACGACGCTTCGAGTGAAATGACAGGACTTCCAATGCCCTTAAGTCTGGATAATGGTATGCCTCAACCAATCGAGCCAGTATCGCTCGATTTGAGCTGCGAGATGTGCGGTGACCTAAAGTTCAACAGCCTGGAGGACCTGGGCAATCATCGTAGAATGGCCCACAGCCTCTTCCCCTGCGACCTGTGCAACAAATGCTACGGTCGTACCTCTCACCTCTGGAAGCACGTGAATCGTGTGCACAAAGGTCACGAGGACGTGACCTGCCGCTTCTGCCTCAAAACCAGCGCTTCGAAAGATCACTTGGCCGCTCACATTGCCAAGATACACAGATACGAACCGGATGTGAAGAGCGAAATGGAAATAAAGCGCGATAACATGGTCTACAAGAACAGTAGCAGTAATTACTATCACATGGCTGCGGCCCAATCGCCTGAGGAGGACGGTCTGCACTTCTGCGAAAAGTGCAACAAGTCTTTCCACAAGCGATACCTCTTACGTCGTCACATGAAGGGATGCCAGAACTATCGCAAGGATCCGGCTGCCCTTCTCACACGCTGTCGCGCTTGCGAGCGTATATTCAAGGACCGAGCTAGTCTGCAGAAACACATTGAAAACCACCATAGCTCGTACGAGTGTCACCTTTGCAAGGAGACGATCACCTCGAAGCTTGGTATTATGACGCACAATCGTATGCACCATATGCATCATCCAGACCTCACTTGCGAGCTCGAGCACTGCCGTAAGTTGTTCAGGACGAAGGAGGACTTGGAGCTGCATCGCAAGGATCACCAGCATCTCGGAACTCCGAACGTCTGCGACTTTTGTGGAGATACGGTCGAGAACAAGCTCAAGCTCAAGATGCACATCCTGAGTCTGCACAGGAACGAGATTGGGGTCTCGTGTGGAGTTTGTTTGATACCAATGAAGGACCCCAAGGATCTCAAGAAGCACGTCGAAGATGTGCACGAGAGCATTTTGCTGAGACCCAATACCTGTCAGGTCTGCGGCAAGCAGTATGCCTCCAAGTGGAAAGCCTTCGACCACACGAAAAAGTGCCACGGCAAGGTCTTCCGCACGTGCAAGCAGTGCTTGGCGGTCTTCACCTCGGACGAGGATCTTCGCTACCACTATGAGCACATTCACAACATTCCTAAAGACCAGCTCGACGCGTTCCAGTACCGGCTCGAGGTTGCTGGTAATAAGATGGACGATTACGATTTGGGTGCGCTTGAAGTCGTTGTCAAGGAGGAACCCGAGGATCTCGACTTCGACTGCGACGCCTTTGACGAAGATACCAATGGGAACTCGAATGATTCCAAACGTAGACGCTCGATCACGGATACTTTTGACTGCGAGATGTGTCCGGAGATATTTCTGAATCACGAGCTGCTATCGTCGCACTACAGAAACGTTCACAATACTGATCCTGAGAGGATGTTTAAGAGGATCAAACTGGAGGCCTCGAGCAGCAAACCAAAGAAAAAGATGCGCGAAAGGGAGAATTACGAGTGCAAGAACTGCCAGAAGCAGTTCTGCACCAAGACCCTTTATTTGGGCCACGTGAATATCTGTACTCGTAAATCCGTGCCTACGTCAATTCTGGAAGCTCATTTGAAGAATAATAATCAGATCAAGCGCGAAGAGCCCGAACCCATTATCTGCGAGACAAATCTTAATATCCCGGACTTCAACCTATTCGAGGACATCAACATGCAGCTGTCGGGCCAAAAGCCCGTACCAAGCCTTATGCCGCTCGGTGGACACTCTTCCAAGTCGTCCAAGTATTCGCGTAAGGACTCGCGCAAGGTCTACGACGAGTCAACGAACACCGAATGCACTTGCGAGGTATGCGGTAAGCAGTGGCCTGCCAAAAAGCATCTGTGGCAACATTTGATCAGGTTCCACAGAGCAGAAGCTGCCGTGACTTGTGGTGTTTGTCTGAAGCTTTGTGCAACGTACGAAGATCTGTCGGAACATCTGAAAAACGTGCATCCATCAATACTTTCCACCGCTGGCAACAACTTCACCTGTAAGATTTGTGGACGTTACCACAACGCACGCAGCAAGCTGTTACTGCACATGAGCATTCACATCGACTGCAAGAACAACTTTATGTGTCAGCGATGCAACATAAGTTTCGACTCCGAGGAGAAGTTAAATGAACACGTCGCATCCTGCGTTGTGGTTCCTAGTCAATCTGAGGCCGGCGAGGAACCTATCGAGGTGAAGGAAGAAAGCGAAGAAAAAGGTAGCCTCATCGGCGACGAAGAGGACGAAACGCAGGAAAACGAGGTAGAGTCCGGAGACGAGAATTCGGACAACGCTGACAGCAGTTCGGATAAGTCCAATGACTCGGATAGCAGTAACAGTAATAGCAACAGCGACAGCTCTAGCGACGATGatagcgacgacgacgaggaagaCGGTCGGTCGCAAAACGTCGATAAggacagcaacagcagcgacGACTCTGACAATGCAGAAGAGATCCAGCCACAGGTCGAGGTCAAGCACCCGATGATGGAAGAGACGATGAGTCTCGGcgaggaggacgaggaggaaGATGGTATGTCCGAATCGGAGAACGACGATTATCTAAAGAAGCAGCAAGAGGCGCAGCAACAGCACGGTATCGAGGACCGCTACGAAATTCAGCAAAAGGAGGCTATGTTAGTCAATTATTCGGATGATGAGGGAACCCCGGCTCTCAGTCCAATGATGCCTCAGGCGATCAACGAGGGCAGCGCGCCGAACGAGGACAGCCAGGAAGAATTAACGAATCGGCACATGACTCTGAATGAGTCATTGAACGTAAAGAAGGAAAAGAGCGACGATAGCGAAGACAATAGCAGTGATGAGGAGGTGCAAGAATCTGGAGACGATGAGGTGCAGCAGGCAGAGCTCGTGGATCCCAACGCTGCCTTCCATGCAGATAATAATTCAAGAAGTAGTAACGAAGGCGAGGAAGAACAAGAGTTAGGCGAAGAGCAGGAAATAGAGGAAGAACAAGAAGAGGAGGAGCACGAGCAAGAGCAAGAgcaagaggaagaggaagtagaggaagaggaggaagaggaagatgaagaagaagaagaagaagaagaagaagaagaagaagaagaaggacaAGGACAAGAAGAAGGACAAGAGCTTGAAGACCAAGAGCACGAAGTACAGGAGCACGAAGTACAAGAAGttgaagaagaggaagaagacggCAACGTAGAGCACGGTATGAATGAACACGAAGTGTTGGAGGTCGATGAGAATGAAATGCACAATCTGAACGGCACAGTGTTGATGCTGGCCAATGATGCGGATGGCAATCAGATCCTGATCGAACGCAACATGGCCGATCTCGAGAACGACGATTCTGTCCACGACATGGCACAGTACGTCTTCCAGGATGGTACAGGTTTTGCCCTCGAGGACTACGAGGCCATAGTTGAGAATCAAGgtgaggaggaagaagagggtcaagaGCACCACGGTTTCGAGATGGAGATCGGTAACGCACACGAGGAAGAGGTTGAGGATCAGGAacaggaggaagaagaaactGAGGAACGAGGCGAAGAAGTCGAAGAAATGGAGGAGGGCGAAGAGATGGAGGAGGCGACTGAAGAGCACGAAGAAGTAGAGGAGAACGACGACGAGGAACTCAGTTCTAGTGCCAAAAGCTAA
Protein Sequence
MEQRERYDELCRLCASYDAVKMDIFGQEGKNRQLVDKIQTCLPFKIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVAMLERCLPPDATKVEIKQENNDSSEPYSELRMELLKDKDTGNSSSGGMSMLIPEAPVVNPNAALGTPPRLKSDGEPDNEEIGDAAAGDERLEDHDKSDEYEMDMETNPSDFLEMSALVPEEESVLPAQQQNAGVFQHRNEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPPPPEIPAPYVQPDSRHQCKTCPKMYTNITDLNKHSRVCLGEQQRKEQQSNNSFNPQNFGKKNAMSKLKNALDPTSDLSSIDSDYENKDYRSAEAKLAKNPQLTILKQALIKGDSAKKEYEERQKMLSKSKKQANATNKEGVDPDVKRWYCEVCPLNFATVDELRQHEKSHDADKPYICILCEKDFVLKSSLSRHILSSHGVDPTPLVESDKCLKKSVQEANMQPPLIKEEQNVTKENSSSPFSADNMENDEDEHENGNDNMLEIETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGVCLKICSDNAQLLNHVNMYHGGNKLLMSEQRRYSCTVCGRQHDSRKKLITHVSIHNIDPSYDPANFVQLNTNYYNENVNSNEGGNELIMDCDDESEKADCYICYKRFPNEDQLIRHQRNAHKSEQLVEVGGNGGVPGQNGTGNRAQYHLFFVCELCGSSHPSKWERWLHVSSMHGNELAIRCERDDCAKIFATKALRNEHAQHHQLQGASPNTCEICGKLWGSRVDYWKHVMGVHADTVPLICGVCLKVFPDVMQLSQHVKLKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGEVYNPSATNSSLIINDASSEMTGLPMPLSLDNGMPQPIEPVSLDLSCEMCGDLKFNSLEDLGNHRRMAHSLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRFCLKTSASKDHLAAHIAKIHRYEPDVKSEMEIKRDNMVYKNSSSNYYHMAAAQSPEEDGLHFCEKCNKSFHKRYLLRRHMKGCQNYRKDPAALLTRCRACERIFKDRASLQKHIENHHSSYECHLCKETITSKLGIMTHNRMHHMHHPDLTCELEHCRKLFRTKEDLELHRKDHQHLGTPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDVHESILLRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDEDLRYHYEHIHNIPKDQLDAFQYRLEVAGNKMDDYDLGALEVVVKEEPEDLDFDCDAFDEDTNGNSNDSKRRRSITDTFDCEMCPEIFLNHELLSSHYRNVHNTDPERMFKRIKLEASSSKPKKKMRERENYECKNCQKQFCTKTLYLGHVNICTRKSVPTSILEAHLKNNNQIKREEPEPIICETNLNIPDFNLFEDINMQLSGQKPVPSLMPLGGHSSKSSKYSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCATYEDLSEHLKNVHPSILSTAGNNFTCKICGRYHNARSKLLLHMSIHIDCKNNFMCQRCNISFDSEEKLNEHVASCVVVPSQSEAGEEPIEVKEESEEKGSLIGDEEDETQENEVESGDENSDNADSSSDKSNDSDSSNSNSNSDSSSDDDSDDDEEDGRSQNVDKDSNSSDDSDNAEEIQPQVEVKHPMMEETMSLGEEDEEEDGMSESENDDYLKKQQEAQQQHGIEDRYEIQQKEAMLVNYSDDEGTPALSPMMPQAINEGSAPNEDSQEELTNRHMTLNESLNVKKEKSDDSEDNSSDEEVQESGDDEVQQAELVDPNAAFHADNNSRSSNEGEEEQELGEEQEIEEEQEEEEHEQEQEQEEEEVEEEEEEEDEEEEEEEEEEEEEEGQGQEEGQELEDQEHEVQEHEVQEVEEEEEDGNVEHGMNEHEVLEVDENEMHNLNGTVLMLANDADGNQILIERNMADLENDDSVHDMAQYVFQDGTGFALEDYEAIVENQGEEEEEGQEHHGFEMEIGNAHEEEVEDQEQEEEETEERGEEVEEMEEGEEMEEATEEHEEVEENDDEELSSSAKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2