Csem010403.1
Basic Information
- Insect
- Cecidostiba semifascia
- Gene Symbol
- -
- Assembly
- GCA_900474235.1
- Location
- UCQR01071635.1:9866-17806[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 7.9e-06 0.0008 20.3 1.0 1 23 183 205 183 205 0.98 2 31 0.0034 0.34 12.0 1.9 1 23 228 251 228 251 0.96 3 31 0.00017 0.017 16.1 0.5 2 23 258 280 257 280 0.96 4 31 0.00093 0.093 13.7 0.9 1 21 300 320 300 321 0.94 5 31 0.0034 0.34 12.0 0.1 2 23 432 453 431 453 0.96 6 31 0.019 1.9 9.7 0.3 1 23 459 482 459 482 0.91 7 31 0.00015 0.015 16.2 0.1 1 23 551 574 551 574 0.96 8 31 0.01 1 10.5 0.4 1 23 580 603 580 603 0.96 9 31 0.15 15 6.8 1.5 1 23 616 638 616 638 0.97 10 31 0.00011 0.011 16.7 0.3 3 23 683 704 682 704 0.96 11 31 1.3 1.3e+02 3.9 0.5 2 23 764 787 763 787 0.93 12 31 3.9 4e+02 2.3 0.0 2 23 796 818 796 818 0.84 13 31 0.093 9.4 7.4 0.1 2 23 825 847 824 847 0.93 14 31 1.6e-05 0.0017 19.3 1.2 1 23 855 877 855 877 0.98 15 31 0.29 29 5.9 0.1 2 23 927 950 926 950 0.95 16 31 0.00027 0.027 15.5 3.3 1 23 953 976 953 976 0.97 17 31 0.021 2.1 9.5 0.5 2 23 983 1005 982 1005 0.95 18 31 0.0009 0.09 13.8 4.8 1 21 1045 1065 1045 1066 0.94 19 31 0.0034 0.34 12.0 1.8 2 23 1080 1101 1079 1102 0.93 20 31 1.1 1.1e+02 4.1 3.1 1 23 1105 1127 1105 1128 0.95 21 31 0.012 1.2 10.2 1.9 2 23 1135 1158 1134 1158 0.94 22 31 1.2 1.2e+02 3.9 0.2 2 23 1166 1188 1166 1188 0.95 23 31 4.6 4.6e+02 2.1 0.0 2 23 1195 1217 1194 1217 0.87 24 31 0.29 29 5.9 2.7 2 23 1226 1248 1226 1248 0.96 25 31 0.33 34 5.7 0.8 2 23 1254 1276 1254 1276 0.93 26 31 0.14 14 6.9 0.5 1 23 1344 1367 1344 1367 0.96 27 31 0.017 1.7 9.8 2.0 1 21 1397 1417 1397 1418 0.93 28 31 0.41 41 5.4 1.9 2 23 1508 1530 1507 1530 0.94 29 31 0.56 56 5.0 0.4 2 23 1537 1559 1536 1559 0.95 30 31 0.21 22 6.3 1.8 1 23 1570 1592 1570 1592 0.97 31 31 0.049 5 8.3 0.1 1 20 1599 1618 1599 1620 0.94
Sequence Information
- Coding Sequence
- ATGTACGACGAGATTGCCGAAGACGACCGACTGCCGAAATGCCTTTGCTACAGATGTATGTacaatttggaaaatttctACGACTTCAGAACGGCCTGCGTCAATGCGGTCGCTATGCTGGAGAGATGTTTGCCACCCGATGCGATGAAGGTGGAAATCAAACAGGAGAACAACGACTCGTCAGAGCCGTATTCGGAGCTGCGGATGGAGCTGTTAAAGGACAAAGACACAGGAAATGGCTCCGGCGGTGGCATGTCGATGCTTATACCCGAGGCGCCGGTCGTCAATCCAAACGCGGCCCTCGGTACACCTCCCAGACTCAAGTCAGACGGCGAACCCGACAATGAGGAGATCAGAGATACCACTGCTGGCGATGAGCGTCTGGAGGATCACGATAAATCGGACGAGTACGAGATGGACATGGAGACGAACCCGAGCGACTTCCTGGAAATGAGCGCGTTGGTACCGGAAGAGGAGCACGTCCTTCCAGCCGCCCAGCGACAGAATGCCGGCGTCTTCCAACATCGTAACGAGCAACACGAGGTCTACGTCTGCTCGCTCTGCAACAAGGCCTTCAGCTCAAAGGGACATCTGTCGTTACACGCGAGGATACACGTCGGTGCCGGAGACGTCATCGGCGAGAAAGTTATTACCGATGATCACACCTCCTACAAGAGGCCCTACCAGTGCGACCTCTGTAACAAGTCGTACTCCACGGCGAAGCATCGCTGGGGACACGTTTCTACCACTCACAGGGGTCATCCAGCTGTAACATGCGGCTACTGCTCGCGCATTTACTCGACGCGCACGAACCTCGAGGAGCACATAAAGTCACGTCACGCGGGTCTGCCGCCGCCACCGGAAATTCCGGCCCCATATGTCCAACCGGACTCGCGACACCAGTGCAAGACCTGCCCGAAGATGTACACCAACATTACCGATCTCAATAAGCACAGCCGCGTTTGCCTAGGCGAACAGCAGCGCAAAGAGCAGGCTAATAACAGTTTCAACCCTCAGAACTTCGGTAAGAAAAATGCCATGTCCAGGCTTAAAAATGCTTTGGAGCCGACATCCGATTTGTCCAGCATCGATTCAGACTACGAGAACAAAGATTACAGGAGCGCGGAAGCAAAACTTGCCAAAAATCCTCAGTTAACCATTCTCAAGCAGGCTCTGATCAAGGGTGATAGCGCGAAGAAGGAGTAcgaagagagacagaaaatGCTTAGCAAATCAAAGAAACAAGCCAATATGGCTAATAAAGAAGGAATGGATCCTGACGTGAAGAGATGGTACTGCGAGGTCTGCCCGCTGAATTTCGCAACAGTCGACGAGCTGAGGCAACATGAAAAGTCCCACGACGCCGATAAGCCTTACATATGTATTCTTTGCGAGAAGGACTTCGTCCTTAAATCTTCTCTCAGTAGGCACATCCTTTCGTCTCATGGGGTCGATCCCACACCGCTAGTCGAGAGCGACAAATGTCTGAAGAAATCTGTGCAGGAGGCAAACATGCAACCGTCACTTATCAAAGAGGAACAGAACGTTACCAAAGATAACTCTTCGTCGCCATTTTCTGCTGATAACATGGAGAATGACGAAGACGAGCACGAGAACGGCAACGACAACATGCTGGAGATTGAGACAGTCTTCGTCTGCGAGATCTGCACGCGCGACTTTAACGACCGTGCCTCGCTCTGGCTGCACATCCGCGCTACTCACAAAGAGTACGCGGCATTCGCTTGCGGTGTCTGTCTGAAGATTTGCTCAGACAACGCCCAACTATTAAATCACGTGAACATGTATCACGGAGGTAACAAACTGCTCATGTCCGAGCAGCGCAGGTACAGCTGCACGATATGCGGCCGACAGCACGACTCGCGCAAGAAGCTTATCACCCACGTGTCCATACACAACATCGACCCGAGCTACGATCCGGCGAACTTCGTGCAACTCAATACCAATTACTACAATGAAAACGTGAATAGCAACGAAGGCGGTAATGAATTGATCATGGATTGCGATGATGAGAGTGAAAAGGCTGATTGCTACATTTGCTACAAGAGGTTCCCGAATGAAGACCAGCTCATTCGACACCAGAGGAACGCGCACAAGTCCGAGCAGTTGGTTGAGGTGGGTGGCAATGGTGGAGTTCCCGGTCAAAACGGTACTGGTAATCGCGCGCAGTACCACCTGTTCTTCGTTTGCGAGCTATGCGGAAGTTCACATCCTAGCAAGTGGGAGAGATGGCTGCACGTTAGCAGCATGCACAGCAACGAACTTGCTATTAGATGTGAACGCGATGACTGCGCCAAGATCTTTGCCACAAAAGCTCTACGCAATGAACACGCGCAGCACCACCAGTTGCAGGGCGCTTCACCCAACACTTGCGAAATTTGCGGCAAGCTTTGGGGCAGCCGAGTCGACTATTGGAAACACGTGATGGGTGTCCATGCAGACACGGTACCGCTCATCTGCGGTGTTTGTCTCAAGGTCTTCCCTGACGTAATGCAGCTCAGTCAACACGTTAAGCTAAAGCACTGGCCGTTGACGAATGGTGATTTCAGCTGCGATATCTGCGGAAGACCGTATTCCAATAAGAGCAAAATGTCGAGGCATAGGAAGATTCACGGACTCGATGGAGAAGTTTACAATCCATCGGCTACTAACAGTAGTTTGATCATTAATGACGCTTCGAGTGAAATGACAGGTCTTCCAATGCCCTTGAGTCTAGACAACGGTATGCCTCAACCGATCGAGCCTGTCTCGCTCGATTTGAGCTGCGATATGTGCGGTGACCTGAAGTTCAACAGCCTGGAGGACCTCGGCAATCATCGTCGCGTGGCCCATAGCCTCTTCCCCTGCGACCTCTGCAACAAATGCTACGGCCGCACCTCTCACCTCTGGAAGCACGTGAATCGCGTGCACAAGGGTCACGAGGACGTGACTTGCCGGTTCTGCCTCAAGACCAGCGCTTCGAAGGATCACTTAGCCGCTCACATTGCCAAGATCCACAGATACGAACCGGATGTGAAGACAGAACTGGATATAAAGCGCGAGAACATGATTTACAAGAACAGCAGCAACTACTATCACATGGCCGCGGCTCAGTCGCCCGAGGAAGATGGCTTGCACTTCTGCGAAAAATGTAACAAGTCCTTCCACAAGCGGTACCTTCTACGTCGTCATATGAAGGGATGTCAGAACTATCGCAAGGATCCGGCTGCCCTGCTCACACGCTGTCGCGCTTGCGAGCGTATATTCAAGGATCGCGCTAGTCTGCAGAAACACATTGAAAATCACCATAGCTCATACGAGTGTCATCTTTGCAAAGAGACGATCACTTCGAAGCTTGGTATCATGACGCACAATCGTATGCACCATATGCATCATCCAGACCTCACGTGCGAGCTCGAGCACTGCCGTAAGTTGTTCAGGACAAAGGAGGATTTGGAGTTGCATCGCAAGGATCATCAGCATCTCGGAACCCCCAACGTATGCGACTTCTGTGGAGATACGGTCGAGAATAAACTGAAGCTCAAGATGCACATTCTGAGTCTGCATAGAAACGAGATTGGGGTCTCGTGTGGAGTTTGTTTGATACCAATGAAGGATCCCAAGGATCTCAAGAAGCACGTCGAAGACGTGCATGAGAGCATTTTGCTGAGACCCAATACCTGTCAGGTTTGCGGAAAGCAATATGCCTCCAAGTGGAAGGCCTTCGACCACACAAAGAAGTGCCACGGCAAAGTCTTCCGCACGTGCAAGCAGTGCTTGGCGGTCTTCACCTCGGACGAGGATCTTCGCTACCACTATGAGCACATTCACAACATTCCTAAGGACCAGCTCGACGCGTTCCAATATCGGCTCGAGGTCGCCGGTAACAAGATGGACGACTACGATTTGGGTGCGCTCGAGGTCGTTGTCAAAGAGGAACCCGAAGATCTTGACTTCGACTGCGACCCCTTTGACGAGGATACCAATGGAAATTCGAATGATTCCAAACGCAGGCGCTCGATCACAGATACCTTCGACTGCGAGATGTGTCCGGAGATATTCCTGAATCACGAGCTGCTATCGTCGCACTACAGGAACGTTCACAACACAGATCCTGAGAGGATGTTCAAGAGAATCAAATTGGACGCCTCGAGCAGTAAACCCAAGAAAAagatgcgcgagagagagaactacgAGTGTAAAAACTGCCAGAAGCAGTTCTGTACCAAGACCCTGTACATGGGCCACGTGAACATCTGCACCCGTAAGTCAGTGCCTACGTCAATTTTGGAGGCTCACTTGAAGAATAACAATCAGATCAAGCGCGAAGAACCCGAGCCCATTATCTGCGAGACAAACCTCAACATTCCCGACTTTAACTTATTCGAGGACATTAACATGCAGCTGTCGGGCCAAAAGCCCGTTCCGAGCCTCATGCCGCTCGGTGGACACTCGTCCAAGTCGTCCAAGTATTCGCGCAAGGACTCGCGCAAGGTCTATGACGAGTCGACGAACACCGAGTGCACTTGCGAGGTATGCGGCAAGCAATGGCCTGCGAAGAAGCATCTGTGGCAACATTTGATCAGGTTCCATAGAGCGGAAGCTGCCGTGACCTGTGGCGTTTGTCTGAAGCTTTGTGCGACGTACGACGACCTGTCGGATCATCTAAAGAACGTGCATCCATCAATACTTTCCACCGCTGGCAACAACTTCACGTGCAAAATTTGCGGGCGGTACCATAACGCACGCagcaagctgctgctgcacatgAGCATTCATATCGACTGCAAGAACAACTTCATGTGTCAGCGATGCAACATCAGCTTTGACTCTGAGGAAAAGTTAAATGAGCACGTGGTATCTTGCGTTGCAATTCCTAGCCAGACTGAGGCCGGGGAGGAACCGGTCATGGTGAAGGACGAAAGCGAGGAAAAGGGTAGTCTCATCGGCGACGAAGAGGACGAAACCCAGGAAAACGAAGTAGAGTCCGGAGACGACAATTCGGATAATGGTGATAGCAGTTCGGATAAGTCCAACGACTCGGATAGCAGTAACAGTAATAGCAACAGCGACAGTTCGAGTGACGAtgacagcgacgacgacgaggaagacgGTCGGTCGCAGAACGTCGATAAGGACAGCAACAGCAGTGAGGACTCCGACAATGCGGAAGAGATCCAGCCACAGGTTGAAGTTAAGCACCCGATGATGGAGGAGACAATGAGCCTCGgcgaggaggacgaggaggaagaTGGTTTGTCCGAATCGGAGAACGACGACTACCTAAAAAAGCAGCAAGAGGCGCAGCAACAACACGGCATCGAAGACCGCTACGAAATTCAGCAGAAGGAGGCTATGTTGGTCAATTATTCGGACGACGAGGGACACCCGGCTCTCAGTCCAATGTTGCCCCAGGCAATCAACGAGAGCAGCGCACCGAACGAGGATAGTCAGGAAGAATTGACGAATAGACACATGACTCTGAATGACTCGTTGAACGTTAAGAAGGAAAAGAGCGACGACAGCGACGAGAATAGCAGCGATGAGGGGGCGCAAGATTCTGGAGATGATGAGGTGCAGCAGGCAGAGCTCGTGGATCCCAACGCTGCCTTCCATGCGGATAATAACTCGAGGAGTAGTAATGAAGGCGAGGAGGAGCCAGAGGAAGGCGAAGAGCAGGAAGTAGAGGAAGAACAGGAAGAAGAGGAGCaagagcaagaagaagaagaggaggaggaggaggaggaggaagaagaagggCAAGAGCAGGAAGGCCAGGAGCTCGAAGGCCAGGAACTCGAAGGTCAGGAGCACGAAGTACAGGAACACGAATTACAAGACCACGAAGTACAGGAACACGAATTACAAGACCACGAAGTACAGGAACACGAAGTACAAGAGCACGAAATACAAGAAGtcgaagaagaggaagaagatgGCAACGTAGACCATGGTATGAATGAATCCGAGGTATTGGAGGTCGATGAGAACGACATGCACAATCTGAACGGCACAGTATTGATGCTGGCCAATGATGCGGATGGCAATCAGATCCTGATCGAGCGCAACATGGCCGATCTCGAGAATGACGACTCTGTTCATGATATGGCACAGTACGTCTTCCAGGATGGCACAGGCTTTGCCCTCGAGGACTACGAGGCCATTGTCGAGAATCAAGgtgaggaggaagaagagggaCAAGAGCACCACGGTTTCGAAATGGAGATCGGCAACGCACACGAGGAAGAGGTTGAGGAacaggaggaggaagaaaccGAGGAACGAGGTGAGGAAGTCGAAGAAATGGAGGAGGGCGAAGAAATGGAGGAGGCGACTGAAGAGCACGAAGAGGTAGAGGAGAACGACGAGGAGGAACTCAGTTCTAGTGCCAAAAGCTAA
- Protein Sequence
- MYDEIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVAMLERCLPPDAMKVEIKQENNDSSEPYSELRMELLKDKDTGNGSGGGMSMLIPEAPVVNPNAALGTPPRLKSDGEPDNEEIRDTTAGDERLEDHDKSDEYEMDMETNPSDFLEMSALVPEEEHVLPAAQRQNAGVFQHRNEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPPPPEIPAPYVQPDSRHQCKTCPKMYTNITDLNKHSRVCLGEQQRKEQANNSFNPQNFGKKNAMSRLKNALEPTSDLSSIDSDYENKDYRSAEAKLAKNPQLTILKQALIKGDSAKKEYEERQKMLSKSKKQANMANKEGMDPDVKRWYCEVCPLNFATVDELRQHEKSHDADKPYICILCEKDFVLKSSLSRHILSSHGVDPTPLVESDKCLKKSVQEANMQPSLIKEEQNVTKDNSSSPFSADNMENDEDEHENGNDNMLEIETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGVCLKICSDNAQLLNHVNMYHGGNKLLMSEQRRYSCTICGRQHDSRKKLITHVSIHNIDPSYDPANFVQLNTNYYNENVNSNEGGNELIMDCDDESEKADCYICYKRFPNEDQLIRHQRNAHKSEQLVEVGGNGGVPGQNGTGNRAQYHLFFVCELCGSSHPSKWERWLHVSSMHSNELAIRCERDDCAKIFATKALRNEHAQHHQLQGASPNTCEICGKLWGSRVDYWKHVMGVHADTVPLICGVCLKVFPDVMQLSQHVKLKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGEVYNPSATNSSLIINDASSEMTGLPMPLSLDNGMPQPIEPVSLDLSCDMCGDLKFNSLEDLGNHRRVAHSLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRFCLKTSASKDHLAAHIAKIHRYEPDVKTELDIKRENMIYKNSSNYYHMAAAQSPEEDGLHFCEKCNKSFHKRYLLRRHMKGCQNYRKDPAALLTRCRACERIFKDRASLQKHIENHHSSYECHLCKETITSKLGIMTHNRMHHMHHPDLTCELEHCRKLFRTKEDLELHRKDHQHLGTPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDVHESILLRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDEDLRYHYEHIHNIPKDQLDAFQYRLEVAGNKMDDYDLGALEVVVKEEPEDLDFDCDPFDEDTNGNSNDSKRRRSITDTFDCEMCPEIFLNHELLSSHYRNVHNTDPERMFKRIKLDASSSKPKKKMRERENYECKNCQKQFCTKTLYMGHVNICTRKSVPTSILEAHLKNNNQIKREEPEPIICETNLNIPDFNLFEDINMQLSGQKPVPSLMPLGGHSSKSSKYSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCATYDDLSDHLKNVHPSILSTAGNNFTCKICGRYHNARSKLLLHMSIHIDCKNNFMCQRCNISFDSEEKLNEHVVSCVAIPSQTEAGEEPVMVKDESEEKGSLIGDEEDETQENEVESGDDNSDNGDSSSDKSNDSDSSNSNSNSDSSSDDDSDDDEEDGRSQNVDKDSNSSEDSDNAEEIQPQVEVKHPMMEETMSLGEEDEEEDGLSESENDDYLKKQQEAQQQHGIEDRYEIQQKEAMLVNYSDDEGHPALSPMLPQAINESSAPNEDSQEELTNRHMTLNDSLNVKKEKSDDSDENSSDEGAQDSGDDEVQQAELVDPNAAFHADNNSRSSNEGEEEPEEGEEQEVEEEQEEEEQEQEEEEEEEEEEEEEGQEQEGQELEGQELEGQEHEVQEHELQDHEVQEHELQDHEVQEHEVQEHEIQEVEEEEEDGNVDHGMNESEVLEVDENDMHNLNGTVLMLANDADGNQILIERNMADLENDDSVHDMAQYVFQDGTGFALEDYEAIVENQGEEEEEGQEHHGFEMEIGNAHEEEVEEQEEEETEERGEEVEEMEEGEEMEEATEEHEEVEENDEEELSSSAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01037254;
- 90% Identity
- iTF_00286647;
- 80% Identity
- -