Basic Information

Gene Symbol
-
Assembly
GCA_002249905.1
Location
NNAY01000050.1:9464-17218[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 4.3e-06 0.00046 20.3 1.0 1 23 163 185 163 185 0.98
2 31 0.0019 0.2 12.0 1.9 1 23 208 231 208 231 0.96
3 31 9.3e-05 0.01 16.1 0.5 2 23 238 260 237 260 0.96
4 31 0.00051 0.054 13.8 0.9 1 21 280 300 280 301 0.94
5 31 0.0019 0.2 12.0 0.1 2 23 412 433 411 433 0.96
6 31 0.048 5.2 7.5 0.2 1 23 439 462 439 462 0.91
7 31 3.8e-05 0.004 17.3 0.1 1 23 531 554 531 554 0.96
8 31 0.0055 0.59 10.5 0.4 1 23 560 583 560 583 0.96
9 31 0.15 16 6.0 1.5 1 23 596 618 596 618 0.97
10 31 5.9e-05 0.0063 16.7 0.3 3 23 663 684 662 684 0.96
11 31 0.7 75 3.9 0.5 2 23 744 767 743 767 0.93
12 31 2.2 2.3e+02 2.3 0.0 2 23 776 798 776 798 0.84
13 31 0.051 5.5 7.5 0.1 2 23 805 827 804 827 0.93
14 31 9e-06 0.00096 19.3 1.2 1 23 835 857 835 857 0.98
15 31 0.12 13 6.3 0.1 2 23 907 930 906 930 0.95
16 31 0.00015 0.016 15.5 3.3 1 23 933 956 933 956 0.97
17 31 0.012 1.2 9.5 0.5 2 23 963 985 962 985 0.95
18 31 0.00049 0.052 13.8 4.8 1 21 1026 1046 1026 1047 0.94
19 31 0.0019 0.2 12.0 1.8 2 23 1061 1082 1060 1083 0.93
20 31 0.6 65 4.1 3.1 1 23 1086 1108 1086 1109 0.95
21 31 0.0066 0.71 10.3 1.9 2 23 1116 1139 1115 1139 0.94
22 31 0.67 71 3.9 0.2 2 23 1147 1169 1147 1169 0.95
23 31 2.5 2.7e+02 2.1 0.0 2 23 1176 1198 1175 1198 0.87
24 31 0.16 17 5.9 2.7 2 23 1207 1229 1207 1229 0.96
25 31 0.18 19 5.7 0.8 2 23 1235 1257 1235 1257 0.93
26 31 0.078 8.4 6.9 0.5 1 23 1325 1348 1325 1348 0.96
27 31 0.015 1.6 9.2 2.0 1 21 1378 1398 1378 1399 0.92
28 31 0.22 24 5.5 1.9 2 23 1489 1511 1488 1511 0.94
29 31 0.47 50 4.4 0.4 2 23 1518 1540 1517 1540 0.95
30 31 0.12 13 6.3 1.8 1 23 1551 1573 1551 1573 0.97
31 31 0.022 2.3 8.6 0.1 1 20 1580 1599 1580 1601 0.93

Sequence Information

Coding Sequence
ATGTACAATTTGGAAAACTTCTACGACTTCAGAACGGCCTGCGTCAACGCGGTCGCTATGCTGGAGCGATGTTTGCCACCCGATGCGACGAAGGTGGAGATCAAACAGGAGAACAACGACTCGTCCGAGCCGTATTCGGAGCTGCGGATGGAGCTGTTGAAGGACAAAGACACGGGAAACAGCTCCAGCGGGGGCATGTCGATGCTCATATCCGAGGCGCCGGTCGTCAATCCGAACGCGGCCCTCGGCACACCTCCAAGACTCAAGTCAGACGGCGAACCCGACAACGAGGAGATCGGAGACGCCGCTGCTGGCGATGAACgtCTGGAGGAGCACGACAAGTCGGACGAGTACGAGATGGACATGGAGACGAATCCGAGCGACTTCCTGGAAATGAGCGCGCTCGTACCGGAAGAGGAGAGCGTCCTTCCAGCCCAGCAGCAGAATGCCGGCGTCTTTCAGCACCGTAACGAGCAACACGAGGTCTACGTCTGCTCGCTCTGCAACAAGGCTTTCAGCTCGAAGGGACATCTGTCGCTACACGCGAGGATACACGTTGGTGCCGGAGACGTGATCGGCGAGAAGGTCATCACGGACGATCACACTTCCTACAAGAGACCGTACCAGTGCGACCTCTGCAACAAGTCCTACTCTACAGCTAAGCATCGCTGGGGACACGTTTCCACCACTCACAGGGGTCACCCAGCAGTGACGTGTGGCTACTGCTCGCGCATCTACTCGACGCGTACGAACCTCGAAGAGCACATAAAATCGCGCCATGCAGGTTTGCCACCGCCGCCGGAAATTCCGACCCCTTACGTCCAGCAGGACTCGCGACATCAGTGCAAGACCTGCCCGAAGATGTACACCAACATTACCGATCTCAACAAGCACAGCCGCGTTTGCCTGGGCGAACAGCAGCGCAAAGAGCAGCAGTCCAATAACAGTTTCAACCCACAGAACTTCGGTAAGAAAAATGCCATGTCCAAGCTTAAAAATGCCTTGGACACGACGTCCGACATGTCTAGCATCGATTCGGACTATGAGAACAAAGATTACAGGAGCGCGGAAGCGAAACTTGCCAAAAATCCTCAGTTAACCATTCTCAAGCAGGCTCTCATCAAGGGCGACAGCGCGAAAAAGGAGTACGAGGAGAGGCAGAAAATGCTCAGCAAATCAAAGAAACAGGCCAATGCTACTAATAAAGGAGTGGATCCTGACGCGAAGAGATGGTACTGCGAGGTCTGCCCGTTGAACTTTGCGACGGTCGACGAGCTGAGACAGCACGAAAAGTCCCACGACGCCGATAAGCCTTACATATGCATTCTTTGCGCGAAGGACTTTGTCCTAAAGTCGTCCCTTAGCAGGCACATACTCTCGTCTCACGGGGTCGATCCCACACCACTAGTCGAGAGCGACAATTGTCTAAAGAAATCCGTACAGGAAGCGAACATGCAACCGCCACTTATCAAAGAGGAACAGAACGTTACCAAAGAAAACTCTTCGTCGCCATTTTCTGCTGATAACATGGAGAATGACGAGGACGAGCACGAGAACGGCAAAGACAACATGCTGGAGATTGAGACGGTCTTTGTCTGCGAGATCTGTACGCGCGACTTCACCGACCGAGCCTCGCTCTGGCTTCACATCCGCGCTACTCACAAAGAGTCGGCAGCATTCGCTTGCGGCGTTTGTCTGAAGATCTGCTCTGACAACGCCCAACTGCTGAACCACGTGAACATGTATCACGGAGGTAATAAACTGCTCATGTCCGAGCAGCGAAGGTACAGTTGCACAGTATGCGGCCGACAGCACGACTCTCGCAAGAAGCTCATCACCCACGTGTCCATACACAACATCGATCCGAGCTACGATCCTGCGAACTTCGTGCAACTCAATACCAATTACTACAACGAAAATGTCAATAGCAACGAAGGCGGTAACGAGTTGATCATGGATTGCGATGACGAGAGCGAAAAGGCTGATTGTTATATCTGCTACAAGAGGTTCCCGAATGAAGACCAGCTCATCCGACATCAGAGGAATGCGCACAAGTCCGAGCAGTTGGTTGAAGTGGGTGGAAATGGCGGAGTTCCCGGTCAAAACGGTACCGGCAATCGCGCGCAGTATCACCTGTTTTTCGTTTGCGAGCTGTGCGGAAGTTCGCATCCGAGCAAGTGGGAGAGATGGCTGCACGTCAGCAGTATGCACGGCAACGAGCTTGCTATAAGGTGTGAACGCGACGACTGCGCCAAGATTTTCGCTACGAAAGCTCTGCGTAACGAGCACGCACAGCACCATCAATTGCAGGGCTCTTCGCCCAACACCTGCGAGATCTGTGGAAAGCTCTGGGGCAGCCGAGTTGACTACTGGAAGCACGTGATGGGTGTCCACGCAGACACGGTACCGCTCATCTGTGGTGTCTGTCTCAAGGTGTTCCCTGACGTGATGCAGCTCAGTCAACACGTCAAGTTGAAGCACTGGCCGTTGACCAATGGTGACTTCAGCTGCGACATTTGCGGAAGACCCTATTCCAACAAGAGCAAAATGTCGAGGCATAGGAAGATTCACGGACTCGATGGAGAAGTTTATAATCCGTCGGCTGCTAACAGTAGTTTGATAATCAACGACGCTTCGAGTGAAATGGCAGGACTTCCAATGCCCTTGAGTCTGGATAATGGTATGCCTCAACCAATCGAGCCAGTATCGCTCGATTTGAGCTGCGAGATGTGCGGTGACCTAAAGTTCAACAGCCTGGAGGACCTGGGCAATCATCGTAGAATGGCCCACAGCCTCTTCCCCTGCGACCTGTGCAACAAATGCTACGGTCGTACCTCTCACCTCTGGAAGCACGTGAATCGTGTGCACAAAGGTCACGAGGACGTGACCTGCCGCTTCTGCCTCAAAACCAGCGCTTCGAAAGATCACTTGGCCGCTCACATTGCCAAGATACACAGATACGAACCGGATGTGAAGACCGAAATGGAAATAAAGCGCGATAACGTGGTCTACAAGAACAGTAGCAGTAATTACTATCACATGGCTGCGGCCCAATCGCCTGAGGAGGACGGTCTGCACTTCTGCGAAAAGTGCAACAAGTCTTTCCACAAGCGGTACCTCTTACGTCGTCACATGAAGGGATGCCAAAACTATCGCAAGGATCCGGCTGCCCTTCTCACACGCTGTCGCGCTTGCGAGCGTATATTCAAGGACCGAGCTAGTCTGCAGAAACACATTGAAAACCACCATAGCTCGTACGAGTGTCACCTTTGCAAGGAGACGATCACCTCGAAGCTTGGTATTATGACGCACAATCGTATGCACCATATGCATCATCCAGACCTCACTTGCGAGCTCGAGCACTGCCGTAAGTTGTTCAGGACAAAGGAGGACTTGGAGCTGCATCGCAAGGATCACCAGCATCTCGGAACTCCGAACGTCTGCGACTTTTGTGGAGATACGGTCGAGAACAAGCTGAAGCTCAAGATGCACATCCTGAGTCTGCACAGGAACGAGATTGGGGTCTCGTGTGGAGTTTGTTTGATACCAATGAAGGACCCCAAGGATCTCAAGAAGCACGTCGAAGATGTGCACGAGAGCATTTTGCTGAGACCCAATACCTGTCAGGTCTGCGGCAAGCAGTATGCCTCCAAGTGGAAAGCCTTCGACCACACGAAAAAGTGCCACGGCAAGGTCTTCCGCACGTGCAAGCAGTGCTTGGCGGTCTTCACCTCGGACGAGGATCTTCGCTACCACTATGAGCACATTCACAACATTCCTAAAGACCAGCTCGACGCGTTCCAGTACCGGCTCGAGGTCGCTGGTAATAAGATGGACGATTACGATTTGGGTGCGCTTGAAGTCGTTGTCAAGGAGGAACCCGAGGATCTCGACTTCGACTGCGACGCTTTTGACGAAGATACCACTGGGAACTCGAACGATTCCAAACGTAGGCGCTCGATCACGGATACTTTTGACTGCGAGATGTGTCCGGAGATATTCCTGAATCACGAGCTGCTATCGTCGCACTACAGAAACGTTCACAATACAGATCCTGAGAGGATGTTTAAGAGGATCAAACTGGAGGCCTCGAGCAGCAAACCGAAGAAAAAGATGCGCGAAAGGGAGAATTACGAGTGCAAGAACTGCCAGAAGCAGTTCTGCACCAAGACCCTGTATTTGGGCCACGTGAATGTCTGTACTCGTAAGTCCGTGCCTACGTCAATTCTGGAAGCTCATTTGAAGAATAATAATCAGATCAAGCGCGAAGAGCCCGAACCCATTATCTGCGAGACAAATCTTAATATCCCGGACTTCAATCTATTCGAGGGCATCAACATGCAGCTGTCGGGCCAAAAGCCCGTACCAAGCCTAATGCCGCTCGGTGGACACTCTTCCAAGTCGTCCAAGTATTCGCGTAAGGACTCGCGTAAGGTCTACGACGAGTCAACGAACACCGAATGCACTTGCGAGGTATGCGGTAAGCAGTGGCCTGCCAAAAAGCATCTGTGGCAACATTTGATCAGGTTCCACAGAGCAGAAGCTGCAGTGACTTGTGGTGTTTGTCTGAAGCTTTGTGCAACGTACGAAGATCTGTCGGAACATCTGAAAAACGTGCATCCATCAATACTCTCCACCGCTGGCAACAACTTCACGTGTAAGATTTGTGGACGTTACCACAACGCACGCAGCAAGCTGTTACTGCACATGAGCATTCACATCGACTGCAAGAACAACTTTATGTGTCAGCGATGCAACATCAGTTTCGACTCCGAGGAGAAGTTAAATGAACACGTCGCATCCTGCGTTGTGGTTCCTAGTCAATCCGAGGCCGGCGAGGAACCTATCGAGGTGAAGGAagaaagcgaagaaaaaggtAGTCTCATCGGCGACGAAGAGGACGAAACGCAGGAAAACGAAGTAGAGTCCGGAGACGAGAATTCGGACAACGCTGACAGCAGTTCGGATAAGTCCAATGACTCGGATAGCAGTAACAGTAATAGCAACAGCGACAGCTCTAGCGACGACGatagcgacgacgacgaggaagacGGTCGGTCGCAAAACGTCGATAAggacagcaacagcagcgacgACTCGGACAATGCAGAAGAGATCCAGCCACAGGTCGAGGTCAAGCACCCGATGATGGAAGAGACGATGAGTCTCGGCGAGGAGGACGATGAGGAAGATGGTATGTCCGAATCGGAGAACGACGATTATCTAAAGAAGCAGCAAGAGGCGCAGCAACAGCACGGTATCGAGGACCGCTACGAAATTCAGCAAAAGGAGGCTATGTTAGTCAATTATTCGGATGATGAGGGACCCCCGGCTCTCAGTCCAATGATGCCTCAGGCGATCAACGAGGGCAGCGCGCCGAACGAGGACAGCCAGGAAGAATTAACGAATAGGCACATGACTCTGAATGAGTCATTGAACgtaaagaaggaaaagagcGACGATAGCGAAGACAATAGCAGTGATGAGGAGGCGCAAGAATCTGGAGACGACGAGGTGCAGCAGGCAGAGCTCGTGGATCCCAACGCTGCCTTCCATGCAGATAATAATTCAAGGAGTAGTAACGAAGGCGAGGAAGAACAAGAGGAAGGCGAAGAGCAGGAAATAGAGGAAGAacaagaggaggaggagcacGAGCAAGAGCAAgagcaagaagaagaggaagtagaggaagaggaggaagaggaagatgaagaagaagaagaagaagaagaggaagaaggacAAGAAGAAGGACAAGAGCTTGAAGAGCAAGAGCACGAAATGGATGTGCACGAAGCACAGGAGCACGAAGTACAAGAAGttgaagaagaggaagaagacggCAACGTAGAGCACGGTATGAATGAACACGAAGTGTTGGAGGTCGATGAGAATGAAATGCACAATCTGAACGGCACAGTGTTGATGCTGGCCAATGATGCGGATGGCAATCAGATCCTGATCGAGCGCAACATGGCCGATCTCGAGAACGACGATTCTGTCCACGACATGGCACAGTACGTCTTCCAGGATGGTACAGGTTTTGCCCTCGAGGACTACGAGGCAATAGTTGAGAATCAAGgtgaggaggaagaagagggtCAAGAGCACCACGGTTTCGAGATGGAGATCGGTAACGCACACGAGGAAGAGGTTGAGGATCAGGAacaggaggaagaagaaactgAGGAACGAGGCGAAGAAGTCGAAGAAATGGAGGAGGGCGAAGAGATGGAGGAGGCGACTGAAGAGCACGAAGAAGTAGAGGAGAACGACGATGAGGAACTCAGTTCTAGTGCCAAAAGCTAA
Protein Sequence
MYNLENFYDFRTACVNAVAMLERCLPPDATKVEIKQENNDSSEPYSELRMELLKDKDTGNSSSGGMSMLISEAPVVNPNAALGTPPRLKSDGEPDNEEIGDAAAGDERLEEHDKSDEYEMDMETNPSDFLEMSALVPEEESVLPAQQQNAGVFQHRNEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPPPPEIPTPYVQQDSRHQCKTCPKMYTNITDLNKHSRVCLGEQQRKEQQSNNSFNPQNFGKKNAMSKLKNALDTTSDMSSIDSDYENKDYRSAEAKLAKNPQLTILKQALIKGDSAKKEYEERQKMLSKSKKQANATNKGVDPDAKRWYCEVCPLNFATVDELRQHEKSHDADKPYICILCAKDFVLKSSLSRHILSSHGVDPTPLVESDNCLKKSVQEANMQPPLIKEEQNVTKENSSSPFSADNMENDEDEHENGKDNMLEIETVFVCEICTRDFTDRASLWLHIRATHKESAAFACGVCLKICSDNAQLLNHVNMYHGGNKLLMSEQRRYSCTVCGRQHDSRKKLITHVSIHNIDPSYDPANFVQLNTNYYNENVNSNEGGNELIMDCDDESEKADCYICYKRFPNEDQLIRHQRNAHKSEQLVEVGGNGGVPGQNGTGNRAQYHLFFVCELCGSSHPSKWERWLHVSSMHGNELAIRCERDDCAKIFATKALRNEHAQHHQLQGSSPNTCEICGKLWGSRVDYWKHVMGVHADTVPLICGVCLKVFPDVMQLSQHVKLKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGEVYNPSAANSSLIINDASSEMAGLPMPLSLDNGMPQPIEPVSLDLSCEMCGDLKFNSLEDLGNHRRMAHSLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRFCLKTSASKDHLAAHIAKIHRYEPDVKTEMEIKRDNVVYKNSSSNYYHMAAAQSPEEDGLHFCEKCNKSFHKRYLLRRHMKGCQNYRKDPAALLTRCRACERIFKDRASLQKHIENHHSSYECHLCKETITSKLGIMTHNRMHHMHHPDLTCELEHCRKLFRTKEDLELHRKDHQHLGTPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDVHESILLRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDEDLRYHYEHIHNIPKDQLDAFQYRLEVAGNKMDDYDLGALEVVVKEEPEDLDFDCDAFDEDTTGNSNDSKRRRSITDTFDCEMCPEIFLNHELLSSHYRNVHNTDPERMFKRIKLEASSSKPKKKMRERENYECKNCQKQFCTKTLYLGHVNVCTRKSVPTSILEAHLKNNNQIKREEPEPIICETNLNIPDFNLFEGINMQLSGQKPVPSLMPLGGHSSKSSKYSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCATYEDLSEHLKNVHPSILSTAGNNFTCKICGRYHNARSKLLLHMSIHIDCKNNFMCQRCNISFDSEEKLNEHVASCVVVPSQSEAGEEPIEVKEESEEKGSLIGDEEDETQENEVESGDENSDNADSSSDKSNDSDSSNSNSNSDSSSDDDSDDDEEDGRSQNVDKDSNSSDDSDNAEEIQPQVEVKHPMMEETMSLGEEDDEEDGMSESENDDYLKKQQEAQQQHGIEDRYEIQQKEAMLVNYSDDEGPPALSPMMPQAINEGSAPNEDSQEELTNRHMTLNESLNVKKEKSDDSEDNSSDEEAQESGDDEVQQAELVDPNAAFHADNNSRSSNEGEEEQEEGEEQEIEEEQEEEEHEQEQEQEEEEVEEEEEEEDEEEEEEEEEEGQEEGQELEEQEHEMDVHEAQEHEVQEVEEEEEDGNVEHGMNEHEVLEVDENEMHNLNGTVLMLANDADGNQILIERNMADLENDDSVHDMAQYVFQDGTGFALEDYEAIVENQGEEEEEGQEHHGFEMEIGNAHEEEVEDQEQEEEETEERGEEVEEMEEGEEMEEATEEHEEVEENDDEELSSSAKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01037254;
90% Identity
iTF_01274727;
80% Identity
-