Nlon000883.1
Basic Information
- Insect
- Nasonia longicornis
- Gene Symbol
- -
- Assembly
- GCA_000004795.1
- Location
- GL277950.1:4071609-4089074[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 6.7e-06 0.00043 20.4 1.0 1 23 179 201 179 201 0.98 2 31 0.0029 0.19 12.1 1.9 1 23 224 247 224 247 0.96 3 31 0.00014 0.0094 16.2 0.5 2 23 254 276 253 276 0.96 4 31 0.00079 0.051 13.9 0.9 1 21 296 316 296 317 0.94 5 31 0.0029 0.19 12.1 0.1 2 23 429 450 428 450 0.96 6 31 0.016 1 9.8 0.3 1 23 456 479 456 479 0.91 7 31 0.00013 0.0082 16.4 0.1 1 23 548 571 548 571 0.96 8 31 0.0086 0.56 10.6 0.4 1 23 577 600 577 600 0.96 9 31 0.23 15 6.1 1.5 1 23 613 635 613 635 0.97 10 31 9.1e-05 0.0059 16.8 0.3 3 23 680 701 679 701 0.96 11 31 1.1 70 4.0 0.5 2 23 761 784 760 784 0.93 12 31 3.4 2.2e+02 2.5 0.0 2 23 793 815 793 815 0.84 13 31 0.079 5.1 7.6 0.1 2 23 822 844 821 844 0.93 14 31 1.4e-05 0.0009 19.4 1.2 1 23 852 874 852 874 0.98 15 31 0.19 12 6.4 0.1 2 23 924 947 923 947 0.95 16 31 0.00023 0.015 15.6 3.3 1 23 950 973 950 973 0.97 17 31 0.018 1.2 9.6 0.5 2 23 980 1002 979 1002 0.95 18 31 0.00076 0.049 13.9 4.8 1 21 1043 1063 1043 1064 0.94 19 31 0.0029 0.19 12.1 1.8 2 23 1078 1099 1077 1100 0.93 20 31 0.94 61 4.2 3.1 1 23 1103 1125 1103 1126 0.95 21 31 0.01 0.67 10.4 1.9 2 23 1133 1156 1132 1156 0.94 22 31 1 67 4.1 0.2 2 23 1164 1186 1164 1186 0.95 23 31 3.9 2.5e+02 2.3 0.0 2 23 1193 1215 1192 1215 0.87 24 31 0.24 16 6.0 2.7 2 23 1224 1246 1224 1246 0.96 25 31 0.28 18 5.8 0.8 2 23 1252 1274 1252 1274 0.93 26 31 0.12 7.9 7.0 0.5 1 23 1342 1365 1342 1365 0.96 27 31 0.023 1.5 9.3 2.0 1 21 1395 1415 1395 1416 0.92 28 31 0.34 22 5.6 1.9 2 23 1506 1528 1505 1528 0.94 29 31 0.73 47 4.6 0.4 2 23 1535 1557 1534 1557 0.95 30 31 0.18 12 6.4 1.8 1 23 1568 1590 1568 1590 0.97 31 31 0.034 2.2 8.7 0.1 1 20 1597 1616 1597 1618 0.93
Sequence Information
- Coding Sequence
- ATGGAGCAGAGGGAGAGGTACGACGAGCTCTGCAGGCTCTGCGCCTCGTACGATGCCGTCAAGATGGACATCTTCGGTCAGGAGGGCAAGAACCGACAGCTCGTCGACAAGATACAGACCTGCTTGCCGTTCAAGACGAAGGTGGAGATCAAACAGGAGAACAACGACTCGTCCGAGCCGTATTCGGAGCTGCGGATGGAGCTGTTGAAGGACAAAGACACGGGAAACAGCTCCAGCGGGGGCATGTCGATGCTCATACCCGAGGCGCCGGTCGTCAATCCAAACGCGGCCCTCGGCACACCTCCCAGACTCAAGTCAGACGGCGAACCCGACAACGAGGAGATCGGAGACGCCGCTGCTGGCGATGAACgtcTGGAGGACCACGACAAGTCGGACGAGTACGAGATGGACATGGAGACGAACCCGAGCGACTTCCTGGAAATGAGCGCGCTCGTACCGGAAGAGGAGAGCGTCCTTCCAGCCCAGCAGCAGAATGCCGGCGTCTTCCAGCACCGTAACGAGCAACACGAGGTCTACGTCTGCTCGCTCTGCAACAAGGCTTTCAGCTCGAAGGGACATCTGTCGCTACACGCGAGGATACACGTTGGTGCCGGAGACGTGATCGGCGAGAAGGTCATCACGGACGATCACACTTCCTACAAGAGGCCGTACCAGTGCGACCTCTGCAACAAGTCCTACTCCACGGCGAAGCATCGCTGGGGACACGTTTCCACCACTCACAGGGGTCACCCAGCAGTGACGTGTGGCTACTGCTCGCGCATCTACTCGACGCGTACGAACCTCGAGGAGCACATAAAATCGCGCCATGCAGGtttgccaccgccgccggaAATTCCGGCCCCTTACGTCCAGCCGGACTCGCGACATCAGTGCAAGACCTGCCCGAAGATGTACACCAACATTACCGATCTCAACAAGCACAGCCGCGTTTGCCTGGGCGAACAGCAGCGCAAAGAGCAGCAGTCCAATAACAGTTTCAACCCACAGAACTTCGGTAAGAAAAATGCCATGTCCAAGCTTAAAAATGCCTTGGACCCGACGTCCGACTTATCTAGCATCGATTCGGACTATGAGAACAAAGATTACAGGAGCGCGGAAGCGAAACTTGCCAAAAATCCTCAGTTAACCATTCTCAAGCAGGCTCTCATCAAGGGCGACAGCGCGAAAAAGGAGTACGAGGAGAGGCAGAAAATGCTTAGCAAATCAAAGAAACAGGCCAATGCTACTAATAAAGAAGGAGTGGATCCTGACGTGAAGAGATGGTACTGCGAGGTCTGCCCGTTGAACTTTGCGACGGTCGACGAGCTGAGGCAGCACGAAAAGTCCCACGACGCCGATAAGCCTTACATATGCATTCTTTGCGAGAAGGACTTTGTCCTAAAGTCGTCCCTTAGCAGGCACATACTCTCGTCTCACGGGGTCGATCCCACACCGCTAGTCGAGAGCGACAAATGTCTAAAGAAATCCGTGCAGGAAGCGAACATGCAACCGCCACTTATCAAAGAAGAACAGAACGTTACCAAAGAAAACTCATCGTCGCCATTTTCTGCTGATAACATGGAGAATGACGAAGACGAGCACGAGAACGGCAACGACAACATGCTGGAGATTGAGACGGTCTTTGTCTGCGAGATCTGTACGCGCGACTTCAACGACCGAGCCTCGCTCTGGCTGCACATCCGCGCTACTCACAAAGAGTACGCGGCATTCGCTTGCGGCGTCTGTCTGAAGATTTGCTCAGACAACGCCCAACTGCTGAATCACGTAAACATGTATCACGGAGGTAACAAACTGCTGATGTCCGAGCAGCGTAGGTACAGCTGCACAGTATGCGGCCGACAGCACGACTCTCGCAAGAAGCTCATCACCCACGTGTCCATACACAACATCGATCCGAGCTACGATCCTGCGAACTTTGTGCAACTCAATACCAATTACTACAATGAAAATGTCAATAGCAACGAAGGCGGTAACGAGTTGATCATGGATTGCGATGACGAGAGCGAAAAGGCTGATTGTTATATCTGCTACAAGAGGTTCCCGAATGAAGATCAGCTCATCCGACATCAAAGGAACGCGCACAAGTCCGAGCAGTTGGTTGAGGTGGGTGGAAATGGCGGAGTTCCTGGTCAAAACGGTACCGGCAATCGCGCGCAGTATCACCTGTTTTTCGTTTGCGAACTGTGCGGAAGTTCGCATCCCAGCAAGTGGGAGAGATGGCTGCACGTCAGCAGCATGCACGGCAACGAGCTTGCTATAAGGTGTGAACGCGACGACTGCGCCAAGATTTTTGCTACGAAAGCTCTGCGTAACGAGCACGCACAGCACCATCAATTGCAGGGCGCTTCACCCAACACCTGCGAGATTTGTGGAAAGCTCTGGGGCAGCCGAGTTGACTACTGGAAGCATGTGATGGGTGTCCACGCAGACACGGTACCGCTCATCTGTGGTGTCTGTCTCAAGGTGTTCCCTGACGTGATGCAGCTCAGTCAACACGTCAAGTTGAAGCACTGGCCGTTGACCAATGGTGACTTCAGCTGCGACATTTGCGGAAGACCGTATTCCAACAAGAGCAAAATGTCGAGGCATAGGAAGATTCACGGACTCGATGGAGAAGTTTATAATCCGTCGGCTACTAACAGTAGTTTGATAATCAACGACGCTTCGAGTGAAATGACAGGACTTCCAATACCCTTAAGTCTGGATAATGGTATGCCTCAACCAATCGAGCCAGTATCGCTCGATTTGAGCTGCGAGATGTGCGGTGACCTAAAGTTCAACAGCCTGGAGGACCTGGGCAATCATCGTAGAATGGCCCACAGCCTCTTCCCCTGCGACCTGTGCAACAAATGCTACGGTCGTACCTCTCACCTCTGGAAGCACGTGAATCGTGTGCACAAAGGTCACGAGGACGTGACCTGCCGCTTCTGCCTCAAAACCAGCGCTTCGAAAGATCACTTGGCCGCTCACATTGCCAAGATACACAGATACGAACCGGATGTGAAGACCGAAATGGAAATAAAGCGCGATAACATGGTCTACAAGAACAGTAGCAGTAATTACTATCACATGGCTGCGGCCCAATCGCCTGAGGAGGACGGTCTGCACTTCTGCGAAAAGTGCAACAAGTCTTTCCACAAGCGATACCTCTTACGTCGTCACATGAAGGGATGCCAGAACTATCGCAAGGATCCGGCCGCCCTTCTCACACGCTGTCGCGCTTGCGAGCGTATATTCAAGGACCGAGCTAGTCTGCAGAAACACATTGAAAACCACCATAGCTCGTACGAGTGTCACCTTTGCAAGGAGACGATCACCTCGAAGCTTGGTATTATGACGCACAATCGTATGCACCATATGCATCATCCAGACCTCACTTGCGAGCTCGAGCACTGCCGTAAGTTGTTCAGGACAAAGGAGGACTTGGAGCTGCATCGCAAGGATCACCAGCATCTCGGAACTCCGAACGTCTGCGACTTTTGTGGAGATACGGTCGAGAACAAGCTGAAGCTCAAGATGCACATCCTGAGTCTGCACAGGAACGAGATTGGGGTCTCGTGTGGAGTTTGTTTGATACCAATGAAGGACCCCAAGGATCTCAAGAAGCACGTCGAAGATGTGCACGAGAGCATTTTGCTGAGACCCAATACCTGTCAGGTCTGCGGCAAGCAGTATGCCTCCAAGTGGAAAGCCTTCGACCACACGAAAAAGTGCCACGGCAAGGTCTTCCGCACGTGCAAGCAGTGCTTGGCGGTCTTCACCTCGGACGAGGATCTTCGCTACCACTATGAGCACATTCACAACATTCCTAAAGACCAGCTCGACGCGTTCCAGTACCGGCTCGAGGTCGCTGGTAATAAGATGGACGATTACGATTTGGGTGCGCTTGAAGTCGTTGTCAAGGAGGAACCCGAGGATCTCGACTTCGACTGCGACGCCTTTGACGAAGATACCAATGGGAACTCGAATGATTCCAAACGTAGGCGCTCGATCACGGATACTTTTGACTGCGAGATGTGTCCGGAGATATTCCTGAATCACGAGCTGCTATCGTCGCACTACAGAAACGTTCACAATACAGATCCTGAGAGGATGTTTAAGAGGATCAAACTGGAGGCCTCGAGCAGCAAACCGAAGAAAAAGATGCGCGAAAGGGAGAATTACGAGTGCAAGAACTGCCAGAAGCAGTTCTGCACCAAGACCCTTTATTTGGGCCACGTGAATATCTGTACTCGTAAGTCCGTGCCTACGTCAATTCTGGAAGCTCATTTGAAGAATAATAATCAGATCAAGCGCGAAGAGCCCGAACCCATTATCTGCGAGACAAATCTTAATATCCCTGACTTCAACCTATTCGAGGACATCAACATGCAGCTGTCGGGCCAAAAGCCCGTACCAAGCCTTATGCCGCTCGGTGGACACTCTTCCAAGTCGTCCAAGTATTCGCGTAAGGACTCGCGCAAGGTCTACGACGAGTCAACGAACACCGAATGCACTTGCGAGGTATGCGGTAAGCAGTGGCCTGCCAAAAAGCATCTGTGGCAACATTTGATCAGGTTCCACAGAGCAGAAGCTGCCGTGACTTGTGGTGTTTGTCTGAAGCTTTGTGCAACGTACGAAGATCTGTCGGAACATCTGAAAAACGTACATCCATCAATACTTTCCACCGCTGGCAACAACTTCACGTGTAAGATTTGTGGACGTTACCACAACGCACGCAGCAAGCTATTACTGCACATGAGCATTCACATCGATTGCAAGAACAACTTTATGTGTCAGCGATGCAACATAAGTTTCGACTCCGAGGAGAAGTTAAATGAACACGTCGCATCCTGCGTTGTGGTTCCTAGTCAATCTGAGGCCGGCGAGGAACCTATCGAGGTGAAGGaagaaagcgaagaaaaaggcaGTCTCATCGGCGACGAAGAGGACGAAACGCAGGAAAACGAAGTAGAGTCCGGAGACGAGAATTCCGACAACGCTGACAGCAGTTCGGATAAGTCCAATGACTCGGATAGCAGTAACAGTAATAGCAACAGCGACAGCTCTAGCGACGATGatagcgacgacgacgaggaagacgGTCGGTCGCAAAACGTCGATAAggacagcaacagcagcgacgacTCCGACAATGCAGAAGAGATCCAGCCACAGGTCGAGGTCAAGCACCCGATGATGGAAGAGACGATGAGTCTCggcgaggaggacgaggaggaagatGGTATGTCCGAATCGGAGAACGATGATTATCTAAAGAAGCAGCAAGAGGCGCAGCAACAGCACAGTATCGAGAACCGCTACGAAATTCAGCAAAAGGAGGCTATGTTAGTCAATTATTCGGATGATGAGGGACCCCCGGCTCTCAGTCCAATGATGCCTCAGGCGATCAACGAGGGCAGCGCGCCGAACGAGGACAGCCAGGAAGAATTAACGAATAGGCACATGACTCTGAATGAGTCATTGAACgtaaagaaggaaaagagcGACGATAGCGAAGACAATAGCAGTGATGAGGAGGTGCAAGAATCTGGAGACGATGAGGTGCAGCAGGCAGAGCTCGTGGATCCCAACGCTGCCTTCCATGCAGATAATAATTCAAGGAGTAGTAACGAAGGCGAGGAAGAACAAGAGGAAGGCGAAGAGCAGGAAATAGAGGAAGAACAAGAAGAGGAGGAGCACGAGCAAGAGCAAGAGCAAGAGcaagagcaagaagaagaggaagaggaggaagaggaagatgaagaagaagaagaagaagaagaaggacNaagaagaagaagaaggacaaGAAGAAGGACAAGAGCTTGA
- Protein Sequence
- MEQRERYDELCRLCASYDAVKMDIFGQEGKNRQLVDKIQTCLPFKTKVEIKQENNDSSEPYSELRMELLKDKDTGNSSSGGMSMLIPEAPVVNPNAALGTPPRLKSDGEPDNEEIGDAAAGDERLEDHDKSDEYEMDMETNPSDFLEMSALVPEEESVLPAQQQNAGVFQHRNEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPPPPEIPAPYVQPDSRHQCKTCPKMYTNITDLNKHSRVCLGEQQRKEQQSNNSFNPQNFGKKNAMSKLKNALDPTSDLSSIDSDYENKDYRSAEAKLAKNPQLTILKQALIKGDSAKKEYEERQKMLSKSKKQANATNKEGVDPDVKRWYCEVCPLNFATVDELRQHEKSHDADKPYICILCEKDFVLKSSLSRHILSSHGVDPTPLVESDKCLKKSVQEANMQPPLIKEEQNVTKENSSSPFSADNMENDEDEHENGNDNMLEIETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGVCLKICSDNAQLLNHVNMYHGGNKLLMSEQRRYSCTVCGRQHDSRKKLITHVSIHNIDPSYDPANFVQLNTNYYNENVNSNEGGNELIMDCDDESEKADCYICYKRFPNEDQLIRHQRNAHKSEQLVEVGGNGGVPGQNGTGNRAQYHLFFVCELCGSSHPSKWERWLHVSSMHGNELAIRCERDDCAKIFATKALRNEHAQHHQLQGASPNTCEICGKLWGSRVDYWKHVMGVHADTVPLICGVCLKVFPDVMQLSQHVKLKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGEVYNPSATNSSLIINDASSEMTGLPIPLSLDNGMPQPIEPVSLDLSCEMCGDLKFNSLEDLGNHRRMAHSLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRFCLKTSASKDHLAAHIAKIHRYEPDVKTEMEIKRDNMVYKNSSSNYYHMAAAQSPEEDGLHFCEKCNKSFHKRYLLRRHMKGCQNYRKDPAALLTRCRACERIFKDRASLQKHIENHHSSYECHLCKETITSKLGIMTHNRMHHMHHPDLTCELEHCRKLFRTKEDLELHRKDHQHLGTPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDVHESILLRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDEDLRYHYEHIHNIPKDQLDAFQYRLEVAGNKMDDYDLGALEVVVKEEPEDLDFDCDAFDEDTNGNSNDSKRRRSITDTFDCEMCPEIFLNHELLSSHYRNVHNTDPERMFKRIKLEASSSKPKKKMRERENYECKNCQKQFCTKTLYLGHVNICTRKSVPTSILEAHLKNNNQIKREEPEPIICETNLNIPDFNLFEDINMQLSGQKPVPSLMPLGGHSSKSSKYSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCATYEDLSEHLKNVHPSILSTAGNNFTCKICGRYHNARSKLLLHMSIHIDCKNNFMCQRCNISFDSEEKLNEHVASCVVVPSQSEAGEEPIEVKEESEEKGSLIGDEEDETQENEVESGDENSDNADSSSDKSNDSDSSNSNSNSDSSSDDDSDDDEEDGRSQNVDKDSNSSDDSDNAEEIQPQVEVKHPMMEETMSLGEEDEEEDGMSESENDDYLKKQQEAQQQHSIENRYEIQQKEAMLVNYSDDEGPPALSPMMPQAINEGSAPNEDSQEELTNRHMTLNESLNVKKEKSDDSEDNSSDEEVQESGDDEVQQAELVDPNAAFHADNNSRSSNEGEEEQEEGEEQEIEEEQEEEEHEQEQEQEQEQEEEEEEEEEDEEEEEEEEGXRRRRRTRRRTRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01037254;
- 90% Identity
- iTF_01274727;
- 80% Identity
- -