Basic Information

Insect: Apocrypta bakeri
Gene Symbol: -
Assembly: GCA_018906985.1
Location: JACCIA010000005.1:1748055-1766847[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 31 5.8e-06 0.00042 20.4 1.0 1 23 212 234 212 234 0.98

2 31 0.0025 0.18 12.1 1.9 1 23 257 280 257 280 0.96

3 31 0.00012 0.0089 16.2 0.5 2 23 287 309 286 309 0.96

4 31 0.00067 0.049 13.9 0.9 1 21 329 349 329 350 0.94

5 31 0.0025 0.18 12.1 0.1 2 23 460 481 459 481 0.96

6 31 0.013 0.97 9.8 0.3 1 23 487 510 487 510 0.91

7 31 0.00011 0.0078 16.4 0.1 1 23 579 602 579 602 0.96

8 31 0.0074 0.53 10.6 0.4 1 23 608 631 608 631 0.96

9 31 0.11 8 6.9 1.5 1 23 644 666 644 666 0.97

10 31 3.7e-05 0.0027 17.9 0.3 3 23 711 732 710 732 0.96

11 31 0.93 67 4.0 0.5 2 23 792 815 791 815 0.93

12 31 2.9 2.1e+02 2.5 0.0 2 23 824 846 824 846 0.84

13 31 0.068 4.9 7.6 0.1 2 23 853 875 852 875 0.93

14 31 1.2e-05 0.00086 19.4 1.2 1 23 883 905 883 905 0.98

15 31 0.11 8 6.9 0.2 2 23 955 978 954 978 0.96

16 31 0.00019 0.014 15.6 3.3 1 23 981 1004 981 1004 0.97

17 31 0.015 1.1 9.6 0.5 2 23 1011 1033 1010 1033 0.95

18 31 0.0051 0.36 11.2 3.0 1 21 1073 1093 1073 1094 0.94

19 31 0.0025 0.18 12.1 1.8 2 23 1108 1129 1107 1130 0.93

20 31 0.8 58 4.2 3.1 1 23 1133 1155 1133 1156 0.95

21 31 0.02 1.4 9.3 0.9 2 23 1163 1186 1162 1186 0.93

22 31 0.89 64 4.1 0.2 2 23 1194 1216 1194 1216 0.95

23 31 3.3 2.4e+02 2.3 0.0 2 23 1223 1245 1222 1245 0.87

24 31 0.21 15 6.1 2.7 2 23 1254 1276 1254 1276 0.96

25 31 0.24 17 5.9 0.8 2 23 1282 1304 1282 1304 0.93

26 31 0.048 3.5 8.1 0.7 1 23 1372 1395 1372 1395 0.96

27 31 0.012 0.89 9.9 2.0 1 21 1425 1445 1425 1446 0.93

28 31 0.3 21 5.6 1.9 2 23 1536 1558 1535 1558 0.94

29 31 0.16 12 6.4 0.6 2 23 1565 1587 1564 1587 0.95

30 31 0.16 11 6.5 1.8 1 23 1598 1620 1598 1620 0.97

31 31 0.62 45 4.6 0.1 1 19 1627 1645 1627 1646 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	31	5.8e-06	0.00042	20.4	1.0	1	23	212	234	212	234	0.98
2	31	0.0025	0.18	12.1	1.9	1	23	257	280	257	280	0.96
3	31	0.00012	0.0089	16.2	0.5	2	23	287	309	286	309	0.96
4	31	0.00067	0.049	13.9	0.9	1	21	329	349	329	350	0.94
5	31	0.0025	0.18	12.1	0.1	2	23	460	481	459	481	0.96
6	31	0.013	0.97	9.8	0.3	1	23	487	510	487	510	0.91
7	31	0.00011	0.0078	16.4	0.1	1	23	579	602	579	602	0.96
8	31	0.0074	0.53	10.6	0.4	1	23	608	631	608	631	0.96
9	31	0.11	8	6.9	1.5	1	23	644	666	644	666	0.97
10	31	3.7e-05	0.0027	17.9	0.3	3	23	711	732	710	732	0.96
11	31	0.93	67	4.0	0.5	2	23	792	815	791	815	0.93
12	31	2.9	2.1e+02	2.5	0.0	2	23	824	846	824	846	0.84
13	31	0.068	4.9	7.6	0.1	2	23	853	875	852	875	0.93
14	31	1.2e-05	0.00086	19.4	1.2	1	23	883	905	883	905	0.98
15	31	0.11	8	6.9	0.2	2	23	955	978	954	978	0.96
16	31	0.00019	0.014	15.6	3.3	1	23	981	1004	981	1004	0.97
17	31	0.015	1.1	9.6	0.5	2	23	1011	1033	1010	1033	0.95
18	31	0.0051	0.36	11.2	3.0	1	21	1073	1093	1073	1094	0.94
19	31	0.0025	0.18	12.1	1.8	2	23	1108	1129	1107	1130	0.93
20	31	0.8	58	4.2	3.1	1	23	1133	1155	1133	1156	0.95
21	31	0.02	1.4	9.3	0.9	2	23	1163	1186	1162	1186	0.93
22	31	0.89	64	4.1	0.2	2	23	1194	1216	1194	1216	0.95
23	31	3.3	2.4e+02	2.3	0.0	2	23	1223	1245	1222	1245	0.87
24	31	0.21	15	6.1	2.7	2	23	1254	1276	1254	1276	0.96
25	31	0.24	17	5.9	0.8	2	23	1282	1304	1282	1304	0.93
26	31	0.048	3.5	8.1	0.7	1	23	1372	1395	1372	1395	0.96
27	31	0.012	0.89	9.9	2.0	1	21	1425	1445	1425	1446	0.93
28	31	0.3	21	5.6	1.9	2	23	1536	1558	1535	1558	0.94
29	31	0.16	12	6.4	0.6	2	23	1565	1587	1564	1587	0.95
30	31	0.16	11	6.5	1.8	1	23	1598	1620	1598	1620	0.97
31	31	0.62	45	4.6	0.1	1	19	1627	1645	1627	1646	0.94

Sequence Information

Coding Sequence: ATGGAGCAGAGGGAGAGGTACGACGAGCTATGTAGGCTCTGTGCCTCGTACGACGCCGTCAAGATGGACATCTTCGGACAGGAAGGCAAGAACCGACAGCTCATAGCCGAAGATGATCGACTGCCGAAATGCCTTTGCTACAGATGCATGTACAATTTGGAGAACTTTTACGACTTCAGAACTGCCTGCGTCAATGCAGTGGCTATGCTGGAAAGATGTTTGCCACCCAATACGGCGAGGGTGACGATAAAGCAAGAAAACAACGACTCATCCGAGCCGTATTCGGAGCTACGAATGGAATTATTAAAAGACAAGGATACCGGAATCGGGTCCACTAGTGGTATGTCGATGTTGATACCCGAAGCACCGGTAGTCAATCCAAATGCAGCCCTTGGAACACCTCCTAGACTCCGGTTGGACGGAGAAGCCGACAACGAGGAGATTAGAGACACCACTGCTGGTGATGAACGTCTCGAGGATCCAGACAAGTCCGACGAGTACGAAATGGATATGGAGACAAACCCGAGCGATTTTCTGGAAATGAGCGCAATGGTACCCGAGGAAGAGAACGTTGTTCCTCCTCAACAACAAAACACCGGTATTTTCCAACATCGTAACGAGCAACACGAGGTCTACGTCTGTTCGCTTTGTAACAAGGCCTTTAGCTCAAAGGGACATCTGTCTTTACACGCCAGGATACACGTTGGTGCCGGGGATGTTATCGGCGAGAAAGTCATCACCGACGATCATACTTCTTACAAAAGGCCCTATCAGTGTGATCTTTGTAACAAGTCGTATTCTACGGCTAAGCATCGTTGGGGTCACGTTTCTACAACCCATAGGGGTCATCCAGCAGTGACGTGCGGTTATTGTTCGCGTATCTACTCGACTCGGACAAATCTCGAAGAGCATATTAAATCACGTCACGCAGGTCTGCCACCGCCACCTGAAATACCGGCACCGTATGTCCAACCGGATTCAAGACATCAGTGCAAAACCTGCCCTAAGATGTACACCAATATTACGGATCTCAATAAACATAGTCGCGTTTGCTTGGGTGAGCAGCAACGTAAAGAACAAGCTAATAACAGTTTTAACTCCCAGAACTTCGGTAAGAAGAATGCCTTGTCTAAGCTCAAAAATGCTTTGGATCCGACGTCTGATTTATCGAGTATCGATTCGGATTACGAGAACAAAGATTACAGAAGCGCGGAAGCAAAACTTGCCAAAAATCCTCAGTTAACCATTCTCAAACAGGCTCTTATCAAAGGCGATAGCGCGAAGAAGGAGTACGAAGAGAGACAGAAAATGCTTAGTAAATCAAAGAAACAAGCTAACTCTAGTAATAAAGGTATCGATCCTGATGTGAAGAGATGGTATTGCGAAGTTTGTCCGTTGAACTTTGCGACAGTCGACGAGTTGAGACAGCACGAAAAGTCCCACGACGCCGATAAGCCTTATATATGCATTCTGTGCGAGAAGGACTTTGTTCTCAAATCTTCTCTCAGTAGGCACATACTCTCGTCTCACGGCGTCGATCCTACACCACTGGTCGAGAGCGACAAGTGCCTGAAAAAATCCATTCAGGAATCTAACATGCAATCGTTACCTGTAAAAGAAGAACAAAACGCTACCAAAGATAACTCTTCATCTCCGTTTTCTGCTGATAACATGGAAAATGATGAAGACGAGCAAGAAAACGGCAATGACAATATGCTGGAGATCGAGACGGTCTTTGTCTGCGAAATTTGTACTCGCGACTTCAACGATCGTGCCTCGCTTTGGCTGCACATTCGCGCAACTCACAAAGAGTACGCAGCTTTCGCTTGCGGCGTTTGCTTGAAAATTTGCTCGGACAACGCTCAATTGCTAAATCACGTTAACATGTATCACGGAGGTAATAAATTACTGATGTCCGAGCAGAGAAGGTACAGTTGTACGATATGCGGTCGACAACACGATTCGCGCAAGAAACTCATTACCCACGTGTCCATACACAATATCGATCCAAGCTACGATCCGGCTAATTTCGTTCAACTGAATACCAATTACTACAATGAGAATGTGAACAGCAACGAAGGAGCTAACGAATTGATAATGGATTGCGACGACGAAAGTGAGAAGGCCGATTGTTACATTTGTTACAAGAGCTTCCCTAACGAGGATCAACTCATTCGACATCAGAGAAATGCACACAAGTCTGAACAGTTGGTCGAAATGGGTGGCAACGGTGGGATTCCTGGTCAGAACGGTACCGGTAACCGAGCGCAATATCACCTGTTCTTCGTTTGCGAATTGTGCGGAAGTTCCCATCCAAGCAAGTGGGAGAGATGGTTACACGTTAGCAGTATGCATGGCAACGAATCCGTAATCAGGTGTGAACGCGACGATTGTGCCAAAATCTTTGCTACCAAAGCTTTGCGTAACGAACACGCTCAGCACCACCAGTTGCAAGGAGCTTCGCCCAATACTTGCGAGATATGTGGCAAACTTTGGGGTAGTCGCGTCGATTATTGGAAACACGTTATGGGTGTTCACGCTGATACTGTGCCACTGATCTGTGGTGTATGCCTCAAAGTGTTCCCCGATGTTATGCAGCTTAGTCAACACGTCAAGCTAAAACACTGGCCGTTGACTAACGGCGACTTCAGCTGCGACATTTGTGGAAGACCATATTCCAATAAAAGTAAAATGTCAAGGCATAGGAAGATTCACGGACTCGATGGAGAAGTTTACAATCCTTTGGCGACTAACAGCAGTCTGATCATCAACGATGCTTCCAGCGAAATGACGGGTCTTCCAATGCCCTTAAGCCTGGACAACGGTATACCTCAACCGATTGAACCAGCCTCGCTTGATCTGAGGTGCGAGATGTGTGGTAATATGAAATTCAACAGTCTCGAAGATCTTGGCAATCACCGACGTATAGCGCACAGTCTATTCCCTTGTGATCTTTGCAACAAATGCTACGGTCGGACGTCGCATCTTTGGAAACACGTGAATCGCGTCCATAAAGGTCACGAGGATGTCACTTGTCGCTTCTGTCTCAAGACCAGTGCTTCAAAAGATCACTTGGCTGCTCACATTGCCAAGATCCACAAATACGAACCGGATGTCAAGACCGAACTCGATATTAAACGAGATAGTATGGTTTACAAGAACAGCAACAACTACTATCACGTGACAGCTGCTCAGTCATCAGAAGAAGATGGATTGCACTTCTGCGAAAAGTGTAACAAGACCTTCCTCAAGCGATACCTTCTTCGTCGTCATATGAAAGGATGCCAAAATTACCGCAAGGATCCTGCTGCTCTGCTTACTCGTTGTCGTGCTTGCGAGCGTATATTCAAAGATCGTGCTAGTTTGCAGAAACACATTGAAAATCATCACAGCTCGTATGAGTGTCATCTTTGTAAGGAGACCATAACTTCTAAGCTCGGTATCATGACGCACAATCGTATGCATCATATGCATCATCCAGACCTCACCTGTGAGCTCGAGTTCTGTCGTAAGTTGTTCAGGACGAAGGAAGACCTGGAACTACATCGTAAAGATCATCAGCACCTTGGAACTCCAAATGTTTGCGACTTCTGTGGAGACACAGTTGAGAATAAGTTGAAACTCAAGATGCACATTTTGAGTTTGCACAGAAACGAGATTGGCGTGTCTTGTGGAGTTTGTTTGATACCAATGAAAGATCCCAAGGATCTCAAGAAACACGTTGAAGACGTGCATGAAAGCATTCTGCTGAGACCTAACACCTGCCAGGTGTGCGGCAAGCAGTATGCTTCCAAGTGGAAAGCATTCGATCACACCAAGAAGTGTCACGGCAAAGTCTTCCGTACATGTAAACAGTGCTTAGCGGTATTCACTTCCGACGAGGATCTTCGCTATCACTACGAACACATACATAACATTCCTAAAGACCAGCTTGATGCGTTCCAGTACAGACTCGAGGTTGCTGGTCACAAGATGGAAGACTACGAATTGGGTGCGTTAGAGGTCGTTGTTAAAGAAGAACCCGAAGATCTCGATTTCGACTGTGATCCTTTCGACGAAGATACCAATGGAAATTCCAACGATTCCAAACGTAGGCGCTCAATCACCGACACCTTTGATTGCGAGATGTGTCCAGAAATATTCCTGAACCACGAGCAGTTATCCTCCCATTACAGGAACGTTCACAATACTGATCCTGAAAGGATGTTCAAGAGGATCAAATTAGATTCATCCAGCAGTAAACCCAAGAAAAAGATGCGAGAAAGAGAGAACTACGAGTGCAAAAACTGTCAGAAACAGTTCTGTACGAAGACTTTGTACATGGGCCACGTGAACATCTGTACTCGTAAATCTGTATCAACATCCATTTTGGAAGCTCACCTGAAGAACAACAACCAGATCAAGCGCGAACAACCCGAGCCTATTCTCTGCGAGACAAACCTCAACATTCCGGACTTCAATCTATTCGAAGACATTAACATGCAGCTCTCGGGACAAAAACCGGTACCAAGTTTGATGCCTCTTGGTGGACACTCGTCCAAATCATCGAAATATTCGCGTAAGGACTCTCGCAAAGTCTACGACGAGTCGACCAACACCGAATGTACCTGTGAGGTGTGCGGCAAACAGTGGCCTGCGAAGAAACATCTTTGGCAGCATTTGATCAGATTCCACAGAGCCGAAGCTGCTGTTACTTGTGGCGTTTGTCTCAAGCTCTGCTCAACGTACGACGACCTGTCTGAACATCTCAAGAATGTACATCCATCGATACTTTCCACCGCTGGAAACAATTTCACCTGCAAAATCTGCGGTCGGTACCACAACGCTCGTAGCAAACTACTGCTGCACATGAGCATTCACATCGATTGCAAGAACAACTTCATGTGCCAACGCTGCAACATCAGCTTCGACGCCGAAGACAAACTGACCGAGCACTCGGTGAATTGCGTCGCAGTTCCAAGCCAGAATGACGTCGGCGAGGAACCGATAACCGTAAAGGAAGAGAACGAAGAAAAAGGTAGCCTCATCGGTGACGAGGAGGATGAAATTCAAGAAAACGAGGTCGAATCCGGTGACGAGAATTCCGAGAACGCTGAGAGTAGTTCTGATAAATCCAACGACTCCGATAGCAGCGACAGTAATAGCAACAGCGACAGTTCGAGCGATGACGACAGCGACGATAACGAAGAGCAGAATGTCGACGAGGATAGTAACAGCACTAAAGACTCCGACAATGTTGAAGCAATCCAACCAGAAGTTGAGATTAAGCATCCAATGATGGAGGAAACAATGAGCCTCGGCGAGGAAGACGAGGAGGAAGAGGGTATATCAGAATCAGAAAATGATGAATATCTCAAGAAGCAACAAGAGGCACAACAACAACATGGAATCGAAGACCGCTATGACATGGAGCAAAAGGAAACTATGATGGTGAACTATTCGGACGACGAAGGACCACCGGCTCTCAGTCCGATGTTGCCACAGGCGATCAACGAGGGTAGTGCTCCAAACGACGATAGCCAGGAAGAGTTGACGAATAGACACATAACTCTGAATGACGCGTTGAGTGTGAAAAAGGAAAATAGCGAGGAGAATACCAGCGACGAGGAGGAACAAGAATCAGGAGATGAAGAAGTGCAACATGCTGAACTCGTGGATCCCAATGCTGATTTTCACGCTGATAATAACTCCAGGAGTAGCAATGAAGGTAGTTAA
Protein Sequence: MEQRERYDELCRLCASYDAVKMDIFGQEGKNRQLIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVAMLERCLPPNTARVTIKQENNDSSEPYSELRMELLKDKDTGIGSTSGMSMLIPEAPVVNPNAALGTPPRLRLDGEADNEEIRDTTAGDERLEDPDKSDEYEMDMETNPSDFLEMSAMVPEEENVVPPQQQNTGIFQHRNEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPPPPEIPAPYVQPDSRHQCKTCPKMYTNITDLNKHSRVCLGEQQRKEQANNSFNSQNFGKKNALSKLKNALDPTSDLSSIDSDYENKDYRSAEAKLAKNPQLTILKQALIKGDSAKKEYEERQKMLSKSKKQANSSNKGIDPDVKRWYCEVCPLNFATVDELRQHEKSHDADKPYICILCEKDFVLKSSLSRHILSSHGVDPTPLVESDKCLKKSIQESNMQSLPVKEEQNATKDNSSSPFSADNMENDEDEQENGNDNMLEIETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGVCLKICSDNAQLLNHVNMYHGGNKLLMSEQRRYSCTICGRQHDSRKKLITHVSIHNIDPSYDPANFVQLNTNYYNENVNSNEGANELIMDCDDESEKADCYICYKSFPNEDQLIRHQRNAHKSEQLVEMGGNGGIPGQNGTGNRAQYHLFFVCELCGSSHPSKWERWLHVSSMHGNESVIRCERDDCAKIFATKALRNEHAQHHQLQGASPNTCEICGKLWGSRVDYWKHVMGVHADTVPLICGVCLKVFPDVMQLSQHVKLKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGEVYNPLATNSSLIINDASSEMTGLPMPLSLDNGIPQPIEPASLDLRCEMCGNMKFNSLEDLGNHRRIAHSLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRFCLKTSASKDHLAAHIAKIHKYEPDVKTELDIKRDSMVYKNSNNYYHVTAAQSSEEDGLHFCEKCNKTFLKRYLLRRHMKGCQNYRKDPAALLTRCRACERIFKDRASLQKHIENHHSSYECHLCKETITSKLGIMTHNRMHHMHHPDLTCELEFCRKLFRTKEDLELHRKDHQHLGTPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDVHESILLRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDEDLRYHYEHIHNIPKDQLDAFQYRLEVAGHKMEDYELGALEVVVKEEPEDLDFDCDPFDEDTNGNSNDSKRRRSITDTFDCEMCPEIFLNHEQLSSHYRNVHNTDPERMFKRIKLDSSSSKPKKKMRERENYECKNCQKQFCTKTLYMGHVNICTRKSVSTSILEAHLKNNNQIKREQPEPILCETNLNIPDFNLFEDINMQLSGQKPVPSLMPLGGHSSKSSKYSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCSTYDDLSEHLKNVHPSILSTAGNNFTCKICGRYHNARSKLLLHMSIHIDCKNNFMCQRCNISFDAEDKLTEHSVNCVAVPSQNDVGEEPITVKEENEEKGSLIGDEEDEIQENEVESGDENSENAESSSDKSNDSDSSDSNSNSDSSSDDDSDDNEEQNVDEDSNSTKDSDNVEAIQPEVEIKHPMMEETMSLGEEDEEEEGISESENDEYLKKQQEAQQQHGIEDRYDMEQKETMMVNYSDDEGPPALSPMLPQAINEGSAPNDDSQEELTNRHITLNDALSVKKENSEENTSDEEEQESGDEEVQHAELVDPNADFHADNNSRSSNEGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01037254;
90% Identity: iTF_01190658;
80% Identity: -