Basic Information

Gene Symbol
-
Assembly
GCA_018906965.1
Location
JACCIB010000009.1:3061132-3077977[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 7.1e-06 0.0011 20.3 1.0 1 23 223 245 223 245 0.98
2 31 0.0031 0.49 12.0 1.9 1 23 268 291 268 291 0.96
3 31 0.00015 0.024 16.1 0.5 2 23 298 320 297 320 0.96
4 31 0.00084 0.13 13.8 0.9 1 21 340 360 340 361 0.94
5 31 0.0031 0.48 12.0 0.1 2 23 471 492 470 492 0.96
6 31 0.017 2.6 9.7 0.3 1 23 498 521 498 521 0.91
7 31 0.00014 0.021 16.3 0.1 1 23 590 613 590 613 0.96
8 31 0.0092 1.4 10.5 0.4 1 23 619 642 619 642 0.96
9 31 0.14 22 6.8 1.5 1 23 655 677 655 677 0.97
10 31 4.6e-05 0.0073 17.7 0.3 3 23 722 743 721 743 0.96
11 31 1.2 1.8e+02 3.9 0.5 2 23 803 826 802 826 0.93
12 31 3.6 5.6e+02 2.3 0.0 2 23 835 857 835 857 0.84
13 31 0.084 13 7.5 0.1 2 23 864 886 863 886 0.93
14 31 1.5e-05 0.0023 19.3 1.2 1 23 894 916 894 916 0.98
15 31 0.16 25 6.6 0.1 2 23 966 989 965 989 0.96
16 31 0.00024 0.038 15.5 3.3 1 23 992 1015 992 1015 0.97
17 31 0.019 3 9.5 0.5 2 23 1022 1044 1021 1044 0.95
18 31 0.00094 0.15 13.6 4.8 1 21 1083 1103 1083 1104 0.94
19 31 0.0031 0.49 12.0 1.8 2 23 1118 1139 1117 1140 0.93
20 31 0.99 1.6e+02 4.1 3.1 1 23 1143 1165 1143 1166 0.95
21 31 0.0073 1.1 10.8 2.2 2 23 1173 1196 1172 1196 0.94
22 31 1.1 1.7e+02 3.9 0.2 2 23 1204 1226 1204 1226 0.95
23 31 4.1 6.5e+02 2.1 0.0 2 23 1233 1255 1232 1255 0.87
24 31 0.26 41 5.9 2.7 2 23 1264 1286 1264 1286 0.96
25 31 0.22 34 6.2 0.9 2 23 1292 1314 1292 1314 0.93
26 31 0.059 9.4 7.9 0.7 1 23 1382 1405 1382 1405 0.96
27 31 0.015 2.4 9.8 2.0 1 21 1435 1455 1435 1456 0.93
28 31 0.37 58 5.5 1.9 2 23 1546 1568 1545 1568 0.94
29 31 0.21 33 6.2 0.6 2 23 1575 1597 1574 1597 0.95
30 31 0.19 31 6.3 1.8 1 23 1608 1630 1608 1630 0.97
31 31 0.039 6.2 8.5 0.5 1 20 1637 1656 1637 1657 0.95

Sequence Information

Coding Sequence
ATGGAGCAGAGGGAGAGGTACGACGAGCTATGCAGGCTCTGCGCCTCCTACGACGCCGTCAAGATGGATATCTTCGGGCAGGAGGGCAAGAACCGACAGCTCGTCGACAAGATACAGACCTGCCTGCCGTTCAAGATCGCCGAAGACGACAGATTGCCGAAATGCCTTTGCTACAGGTGCATGTACAATTTGGAGAACTTCTACGACTTCAGAACGGCCTGCGTCAATGCGGTCGCTATGCTGGAGAGATGCCTGCCACCCGACGCGTCGAGGGTGGCGATCAAGCAGGAGAACAACGACTCGTCGGAGCCGTACTCGGAGCTGCGAATGGAATTGCTGAAGGACAAGGACGCCGGGAATGGCTCCGCTGGTGGCATGTCGATGCTCATACCCGAGGCGCCGGTTGTCAATCCAAATGCCGCACTCGGAACACCCCCGAGACTCAAGTCGGACGGCGAAGCCGAGAGCGAGGATATCAGAGATACCACTGCTGGAGACGGACGACTTGAGGATCCCGACAAGTCGGACGAGTACGAGATGGACATGGAGACGAACCCCAGTGACTTTCTCGAGATGAGCGCGATGGTACCGGAAGAGGAGAGCGTTATTCCACCCCAGCAGCAGAGCGCCGGCATCTTCCAGCACCGCAACGAGCAGCACGAGGTCTACGTTTGTTCGCTCTGTAACAAGGCCTTTAGCTCGAAGGGACACCTCTCGCTACACGCGAGGATACACGTTGGTGCCGGAGACGTCATCGGCGAGAAGGTCATCACCGACGATCACACCTCTTACAAGAGGCCTTACCAGTGCGATCTCTGTAACAAGTCGTATTCCACGGCGAAGCACCGCTGGGGACACGTGTCCACTACGCACAGGGGTCACCCGGCAGTGACGTGCGGTTACTGCTCGCGAATCTACTCGACCCGCACGAACCTCGAGGAGCACATAAAGTCACGTCACGCGGGTTTGCCACCGCCACCGGAAATTCCGGCCCCGTATGTTCAACCGGATTCGCGGCATCAGTGCAAAACCTGCCCGAAGATGTACACCAACATTACGGATCTCAATAAGCACAGCCGAGTCTGCTTGGGTGAACAGCAGCGCAAAGAACAGGCTAATAACAGTTTCAACCCGCAGAACTTCGGTAAGAAAAATACCATGTCCAAGCTCAAAAATGCTCTGGACCCGATGTCCGATTTATCGAGCATCGATTCGGATTACGAGAATAAAGATTACAGAAGCGCGGAAGCAAAACTTGCCAAAAATCCTCAGTTAACCATTCTCAAGCAGGCTCTTATCAAGGGCGACAGCGCGAAGAAAGAGTACGAAGAGAGACAGAAAATGCTTAGTAAATCAAAGAAACAAGCCAATATGAGTAATAAAGGTGTGGATCCTGATGTGAAGAGATGGTATTGCGAAGTTTGTCCGCTGAACTTTGCAACAGTTGACGAGCTGAGGCAGCACGAAAAGTCTCACGACGCTGATAAGCCTTACATATGCATTCTGTGCGAGAAGGACTTTGTTCTTAAATCGTCTCTCAGCAGGCACATACTCTCATCTCATGGGGTCGATCCTACACCACTGGTCGAGAGTGACAAATGCTTGAAGAAGTCCATTCAGGAGTCTAACTCGCAACCGCTATGTATCAAAGAAGAACAAAACGTTACCAAAGAAAACTCATCATCGCCATTTTCTGCTGATAACATGGAAAATGACGAAGACGAGCACGAAAACGGCAATGATAATATGTTGGAGATCGAGACGGTCTTTGTTTGCGAGATTTGTACGCGTGACTTCAACGATCGTGCTTCGCTCTGGTTACATATTCGTGCTACTCACAAAGAGTATGCGGCATTTGCCTGCGGCGTTTGCTTAAAGATCTGCTCGGATAACGCCCAATTGTTAAATCACGTGAACATGTACCACGGAGGTAACAAATTACTGATGTCCGAGCAACGTAGGTACAGCTGCACGATTTGCGGTCGACAGCACGATTCGCGCAAGAAACTCATCACCCACGTGTCTATACACAATATCGATCCCAGCTATGATCCTGCGACCTTTGTGCAACTCAATACCAATTACTATAATGAGAATGTGAATAGCAACGAAGGTGGTAACGAGTTAATCATGGATTGCGATGACGAGAGCGAAAAGGCTGATTGTTACATTTGCTACAAGAGTTTCCCGAATGAAGATCAGCTCATTCGACACCAGAGGAATGCGCATAAATCTGAGCAGTTAGTTGAGATGGGGGGCAACGGTGGCGTTCCCGGTCAAAACGGTACTAACAGTCGAGCGCAATACCACCTGTTCTTCGTTTGCGAGCTGTGCGGAAGTTCACATCCAAGTAAATGGGAGAGATGGTTACACGTTAGTAGCACGCACGGGAACGAATCTGTTATCAGGTGTGAACGTGACGACTGTGCCAAGATTTTCGCTACCAAAGCTTTACGTAACGAGCACGCGCAGCACCACCAGTTGCAAGGTGCTTCGCCTAATACTTGCGAGATCTGTGGTAAACTGTGGGGTAGCCGAGTCGATTATTGGAAGCATGTTATGGGCGTTCATGCCGATACAGTGCCACTTATTTGTGGAGTCTGCCTGAAGGTCTTCCCAGACGTCATGCAACTCAGCCAACACGTTAAACTAAAGCACTGGCCATTGACTAATGGTGACTTTAGTTGCGACATTTGCGGAAGACCGTATTCCAACAAAAGCAAAATGTCAAGGCATAGGAAGATTCATGGACTCGATGGAGAAGTTTACAATCCGTCGGCTACTAATAGCAGTTTGATTATTAATGATGCTTCAAGCGAAATGGCTGGTCTTCCAATGCCTTTAAGTCTGGACAATGGTATGCCTCAACCGATTGAGCCAGTCTCACTTGATCTGAGATGTGAGATGTGCGGTGACCTAAGGTTCAATAGTTTGGAGGATCTGGGCAATCATCGTCGCATAGCCCACAGCCTCTTCCCCTGCGACTTATGTAATAAATGTTACGGACGAACCTCGCATCTCTGGAAGCACGTGAATCGCGTGCACAAGGGTCACGAGGACGTAACCTGCCGCTTCTGCCTCAAGACCAGCGCTTCGAAAGATCACTTGGCCGCACATATTGCCAAGATTCACAGATACGAACCGGATGTGAAAACAGAAATAGAAATCAAGCGCGATAACATTTATAAGCACAGCAATAACTACTATCACATGGCTGCGGCCCAGTCACCCGAAGAAGATGGTTTACACTTCTGTGAAAAATGTAACAAGACTTTCCATAAGCGATATCTTCTTCGTCGTCATATGAAGGGATGTCAAAATTACCGCAAGGATCCCGCCGCACTGCTCACACGCTGTCGCGCTTGTGAGCGCATATTCAAAGACCGTGCTAGTCTGCAGAAGCACATCGAAAATCACCACAGCTCGTACGAGTGTCACCTCTGCAAAGAGACGATCACATCGAAGCTTGGCATCATGACGCACAATCGTATGCACCATATGCATCATCCAGATCTTACCTGCGAGCTCGAGCACTGTCGTAAATTGTTTAGGACGAAGGAGGATTTGGAATCGCATCGAAAGGATCATCAGCACCTTGGAGTTCCTAACGTTTGCGACTTCTGTGGAGACACCGTCGAAAATAAACTGAAGCTGAAGATGCATATTCTGAGTCTTCATAGAAACGAGATTGGGGTCTCGTGCGGAGTTTGTTTGATACCAATGAAGGATCCTAAGGATCTCAAGAAGCACGTTGAAGACGTACACGACAGCATTTTGCTGAGACCGAACACTTGTCAGGTTTGCGGTAAACAGTATGCCTCCAAGTGGAAGGCTTTCGACCACACAAAGAAGTGTCACGGCAAAGTTTTCCGTACCTGCAAACAGTGCTTGGCAGTCTTCACTACAGACGAGGATCTTCGCTACCACTACGAACACATTCATAACATTCCTAAGGACCAACTCGATGCGTTCCAGTATCGTCTTGAGGTTGCTGGTCCCAAAATGGATGACTACGAATTAGGTGCCCTCGAGGTCGTTGTGAAGGAAGAACCCGAAGATCTCGACTTTGATTGTGATCCCTTTGACGATGATACCAATGGAAACTCAAACGATTCCAAACGAAGGCGCTCAATCACCGATACGTTCGACTGCGAAATGTGCCCGGAGATATTCCTGAATCACGAACAACTATCTTCTCATTATAGAAACGTTCACAACACAGATCCTGAAAGGATGTTTAAGAGAATTAAGTTAGAGCCCCCAAGTAGCAAACCCAAGAAAAAGATGCGTGATAGGGAGAACTACGAATGCAAAAATTGCCAAAAGCAGTTCTGTACAAAAACTTTGTATATGGGTCACGTGAATATCTGCACTCGAAAACCAGCATCCACATCCATTTTAGAAGCTCACTTGAAGAACAATAATCAGATAAAGCGAGAAGAGCCCGAGCCCATCCTCTGTGAGACGAATCTAAACATTCCGGACTTCAATCTGTTCGAGGACATCAACATGCAGTTGTCGGGACAAAAACCGGTGCCAAGCTTGATGCCTCTTGGTGGACACTCCTCTAAGTCATCGAAGTATTCGCGAAAGGATTCGCGCAAGGTTTACGATGAGTCAACGAACACGGAATGTACTTGCGAAGTATGTGGCAAGCAGTGGCCCGCAAAGAAACATCTTTGGCAGCATTTAATCAGGTTCCACAGAGCTGAAGCTGCTGTGACCTGCGGTGTTTGTCTAAAACTTTGCTCAACATACGATGACTTGTCGGATCATCTCAAGAACGTACATCCATCAATACTTTCTACCGCTGGTAATAACTTTACGTGCAAGATTTGCGGTCGGTACCACAACGCGCGCAGCAAATTATTATTGCACATGAGTATTCACATTGACTGCAAGAACAACTTCATGTGTCAGCGGTGTCACATCAGTTTTGACACTGAGGAAAAGTTAAATGAGCACACAGTCAATTGCGTTGCAGTTCCAAACCAAAATGAAGCCGACGAGGAACCTATCACAGTTAAGGAAGAAAATGAAGAGAAGGGTAGTCTTATCGGTGATGAGGAGGAAGAAATTCAGGAAAATGAAGTCGAATCAGGTGATGAGAATTCGGAAAATGGTGACAGTAGTTCCGATAAATCCAACGATTCTGATAGCAGTGACAGTAACAGCAACAGTGATAGTTCGAGCGACGATGACAGCGACGATAACGACGAAGATGGTCGATCGCAAAACATCGACGAGGACAGCAATAGTTCCAAAGATTCCGAGAACGCTGAAACAACGCAACAAGAGGTTGAAATAAAACATCCAATGATGGAGGAGACCATGAGTCTTGGTGATGAGGATGAAGAGGAAGACGGTATGTCTGAATCGGAGAATGATGAGTATCTCAAGAAACAGCAAGAAGCGCAACAACAACATGGCATTGAGGACCGCTATGACATGGAGCAGAAGGAAGCTATGATGGTCAATTATTCGGACGATGAAGGACCCCCAGCTCTCAGTCCAATGTTGCCCCAGGCGATCAACGAGGGCAGCGCACCAAATGAGGATAGCCAAGAAGAGTTGACAACTAGGCACATGACTCTGAATGATGCATTGAATGTTAAGAAAGAGAAAAGCGATAACAGCGAGGAGAATACCAGTGACGAAGAAGAGCAAGAATCCGGAGATGAAGAGGTACAACATGCAGAACTCGTGGATCCCAATGCTGCCTTTCACGCGGATAATAACTCGAGGAGCAGTAACGAAGAGCAAGATAGTCAAGAACACGAAGGCCAAGAGCATGAAGTTCAGGAGCACGAAATGCAAGAAGTCGAAGAAGAGGATGAAGATGGCAACATAGAGCACGCAATAAACGAACATGAGGTGTTGGAAGTTGATGAGAATGATATGCATAATCTGAACGGGACAGTATTAATGCTGGCCAACGATGCGGATGGCAATCAAATTCTAATCGAGCGCAATATGGCCGATCTGGAGAATGATGACTCTGTTCATGACATGGCGCAGTACGTCTTCCAAGACGGCACAGGCTTCGCTCTGGAGGATTATGAAGCTATAGTCGAAAACCAAGGTGACGAGGAAGATGAAGGCCAAGTGCACCATGGTTTCGAAATGGAGATCGGTAACGCACACGAGGAGGAGGTCGAGGAGCAAGAACAAGAGGAGGAGGAAACTGAGGAGAGGGGTGAGGAAGTTGAGGAAATGGAGGAAGGTGAAGAGATGGAGGATGCTGTCGAGGAGCAAGAAGTTGAGGAAAATGATGAGGAAGAACTCAGTTCTAGTGCCAAAAGCTAA
Protein Sequence
MEQRERYDELCRLCASYDAVKMDIFGQEGKNRQLVDKIQTCLPFKIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVAMLERCLPPDASRVAIKQENNDSSEPYSELRMELLKDKDAGNGSAGGMSMLIPEAPVVNPNAALGTPPRLKSDGEAESEDIRDTTAGDGRLEDPDKSDEYEMDMETNPSDFLEMSAMVPEEESVIPPQQQSAGIFQHRNEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPPPPEIPAPYVQPDSRHQCKTCPKMYTNITDLNKHSRVCLGEQQRKEQANNSFNPQNFGKKNTMSKLKNALDPMSDLSSIDSDYENKDYRSAEAKLAKNPQLTILKQALIKGDSAKKEYEERQKMLSKSKKQANMSNKGVDPDVKRWYCEVCPLNFATVDELRQHEKSHDADKPYICILCEKDFVLKSSLSRHILSSHGVDPTPLVESDKCLKKSIQESNSQPLCIKEEQNVTKENSSSPFSADNMENDEDEHENGNDNMLEIETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGVCLKICSDNAQLLNHVNMYHGGNKLLMSEQRRYSCTICGRQHDSRKKLITHVSIHNIDPSYDPATFVQLNTNYYNENVNSNEGGNELIMDCDDESEKADCYICYKSFPNEDQLIRHQRNAHKSEQLVEMGGNGGVPGQNGTNSRAQYHLFFVCELCGSSHPSKWERWLHVSSTHGNESVIRCERDDCAKIFATKALRNEHAQHHQLQGASPNTCEICGKLWGSRVDYWKHVMGVHADTVPLICGVCLKVFPDVMQLSQHVKLKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGEVYNPSATNSSLIINDASSEMAGLPMPLSLDNGMPQPIEPVSLDLRCEMCGDLRFNSLEDLGNHRRIAHSLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRFCLKTSASKDHLAAHIAKIHRYEPDVKTEIEIKRDNIYKHSNNYYHMAAAQSPEEDGLHFCEKCNKTFHKRYLLRRHMKGCQNYRKDPAALLTRCRACERIFKDRASLQKHIENHHSSYECHLCKETITSKLGIMTHNRMHHMHHPDLTCELEHCRKLFRTKEDLESHRKDHQHLGVPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDVHDSILLRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTTDEDLRYHYEHIHNIPKDQLDAFQYRLEVAGPKMDDYELGALEVVVKEEPEDLDFDCDPFDDDTNGNSNDSKRRRSITDTFDCEMCPEIFLNHEQLSSHYRNVHNTDPERMFKRIKLEPPSSKPKKKMRDRENYECKNCQKQFCTKTLYMGHVNICTRKPASTSILEAHLKNNNQIKREEPEPILCETNLNIPDFNLFEDINMQLSGQKPVPSLMPLGGHSSKSSKYSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCSTYDDLSDHLKNVHPSILSTAGNNFTCKICGRYHNARSKLLLHMSIHIDCKNNFMCQRCHISFDTEEKLNEHTVNCVAVPNQNEADEEPITVKEENEEKGSLIGDEEEEIQENEVESGDENSENGDSSSDKSNDSDSSDSNSNSDSSSDDDSDDNDEDGRSQNIDEDSNSSKDSENAETTQQEVEIKHPMMEETMSLGDEDEEEDGMSESENDEYLKKQQEAQQQHGIEDRYDMEQKEAMMVNYSDDEGPPALSPMLPQAINEGSAPNEDSQEELTTRHMTLNDALNVKKEKSDNSEENTSDEEEQESGDEEVQHAELVDPNAAFHADNNSRSSNEEQDSQEHEGQEHEVQEHEMQEVEEEDEDGNIEHAINEHEVLEVDENDMHNLNGTVLMLANDADGNQILIERNMADLENDDSVHDMAQYVFQDGTGFALEDYEAIVENQGDEEDEGQVHHGFEMEIGNAHEEEVEEQEQEEEETEERGEEVEEMEEGEEMEDAVEEQEVEENDEEELSSSAKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01037254;
90% Identity
iTF_00144038;
80% Identity
-