Mmin017080.1
Basic Information
- Insect
- Mycalesis mineus
- Gene Symbol
- -
- Assembly
- GCA_034621355.1
- Location
- CM067898.1:9254174-9256904[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00029 0.02 16.0 3.3 1 23 169 192 169 192 0.97 2 17 0.0001 0.007 17.5 0.6 1 23 201 224 201 224 0.96 3 17 0.022 1.5 10.1 0.3 2 23 237 259 237 259 0.97 4 17 1.5e-05 0.001 20.1 1.4 1 23 268 291 268 291 0.98 5 17 6.7e-05 0.0046 18.0 1.4 1 23 303 326 303 326 0.97 6 17 0.0001 0.0072 17.4 0.9 2 23 359 381 358 381 0.97 7 17 0.00064 0.044 14.9 0.9 2 23 391 413 390 413 0.96 8 17 0.12 8.1 7.8 0.7 2 20 418 436 417 438 0.89 9 17 0.0013 0.092 13.9 3.7 2 21 443 462 442 465 0.94 10 17 0.038 2.6 9.4 1.7 3 23 475 496 474 496 0.95 11 17 0.001 0.072 14.3 2.6 1 23 501 524 501 524 0.95 12 17 0.00014 0.0097 17.0 2.0 2 23 535 557 534 557 0.95 13 17 0.00048 0.033 15.3 0.4 1 23 584 607 584 607 0.94 14 17 4.9 3.4e+02 2.7 0.1 2 23 614 634 613 634 0.83 15 17 0.038 2.6 9.4 1.0 2 23 641 662 640 662 0.97 16 17 0.024 1.7 10.0 0.1 1 23 728 750 728 750 0.97 17 17 0.24 17 6.8 2.0 1 23 756 779 756 779 0.96
Sequence Information
- Coding Sequence
- atgtcgatTAAGGAAGAGAAACATGATATAAAGATAGAGAAAAAGGAGGATGACAAAAGAAAAGATCCCACTTCATTCTTGCCAGAAGAAGCAATGTCGTATGAAATTAagtcaaagaagaagaagaagaaaaaaaagaaagactTGATGGAAGACCCATTCAAAGATATAGAAGAGAAAGTCTCTCTGCCGACAACAACATTTTACGACCCGGCTCCAGATGTTTATACGGAACCAATCCAACATTTGGATCCAGAAGTCAATATTAAGGTTGAGAATATAGAGGTGGAGTTGGATTTTAATGATTTTGCAAATGACACGGGCTTAATGGTGGAGGGACCTCATAGTGAAGATAGCCAAGAGCCAGCTGTTAAGATCGAAGAACAGAACCATGAAGCAGTGCTATTAACTTTCGAAAGTATACTTAAAGACGAGAACATGCTTACCCATGTTGCAGATCAAAATGTCTTAGGGTACAGCCACATTACAGCTCCCGCGCCGAATTTTGTGTGCAAAGTTTGCCATCTAGTCTTTCAAACCCCGAAAACATTGAGAATGCATCAAAAAAGAAAGCACAAAGCCTATCGAAAGTCTTTTAGACACATATGTGATTACTGTGGCATGGCATACGAACAAAAGAACAGTTTGGTTgcacatataaaaagaaaacacgGACCTAATTCAGTGCCTGACGATTTGGAAGAAAGGACGTGCGATATATGTGCTCTAGTTTTCAAGGGAATAGCACGATTGCGCATGCACATGCGAAGAAAACATGGTTCTTTCGAAGAATCCTTTAAATATGTCTGTCACGATTGCGGACTGACGTACGACAAGCAAAGAAGTCTGATCGTGCATATGCAAAGAAAACATTCAACTGAACCCAAACCAGTCTCGAACACATGGTATAATTGTCCATTTTGTCCCAAAGTATTTACGAAAAGAGAGACTTACGTAAGGCATGTACAGCGAAAGCATAGGATAAACGATGAAGATGACAAGAAGGAAGAGGAACTGGGAACTAAGGAAATGAGGGAATTGTCACATTGCAAGAATGAGCATACAGGGGAGATTACTTGCAAAGATTGCCCTCTAGTTTTTTCTTCAATGAACTTCTTAAAATTGCATATGAGAAGAAAACATAACGCATTAAGAGAAGATTTTAGGTTGAAATGTATGATATGCAATTTATCATACGATAAAGTTGAAAGTTTGAAACGTCACATTAGAAGAAAGCACGATAAAGGAACATACTGTGATGTCTGTCAGAAACAATTCGCAACTCGCGATATGTACCTCGGGCACACGCACAAAAAAATGATCCAAGAATGCCACATATGCGGTCTTGTGTTCGCATCTAGAGGGGGCTTGTGTAAGCATTTGCGATGTACCCACAAAATTGAAGCTCCCAAAACTGTGTTTTGCGATGTGTGCAACGAAAGTTTTCATGATAGACGTCAATTAAAACCTCATTATATGAAAGTCCATCTACAAGTATCATATACCTGTCGatattgtaagaaaatatttaggGCTAAAGAAAGTTACAGACGTCACGTTCTGTTGAAACATCCAAATCAGAGTCAAAGTGAAAATCAGCAGAAATGTGATCACTGTCCAGAAATGTTCTCGGATGAATTCGAACTGTGTAAACATATCAATTTAGCGCATAGAGTACAGAAAGGCAACGAAATTGGTGCTCTGACATTAATAGAAGTGAAGAAAGAAGAAATCGAAATACCAGCGAAATTTCAATGTACGAAATGTCCAGAAAACTATGACACTTGGGAAGAACTGAAATTGCATTATGAGCAAAATCATCAGAAAATATCCAACACCCAGTGTCAAGTTTGTGGTGAGATGGTGCCTGAATTGGAAATACAGAAGCATATCAAAGTACACCGTACCAATACGATGATACAGTGCAGATTTTGTGAATTCGAAACATCGAACCGTGCTAGTATGACACAACATATGCTAAGACATAAAAATGCGACGACCTTGCACTGCGATTTCAATGGTTGCAGatataaaacatattatgaGCTTGCCATGGAGAAACATAAGAGGAAACATGAAGATTTAGGTCTCAAACTTCAATGTACGCAATGCCCATTCCAAACTATGAATAAGTACATTTTGAGATACCACGAGGAAGCTCATGCGACTGGCAAAAAGAGATATATGTGCGACCAATGTGACTATGCAACCATACTGCCAGCAAACTTAGTGCAGCACAAATACAAACATTCTACTGAAAAACGGTTCAAGTGTGAAGTTTGCCCGTTCGCGACGAAGTACAACACGTCGCTACGTTTTCACGTCAAGAAAAAACACTGTGATCTCCCTACATTCAAGTTAATTACAAATTGa
- Protein Sequence
- MSIKEEKHDIKIEKKEDDKRKDPTSFLPEEAMSYEIKSKKKKKKKKKDLMEDPFKDIEEKVSLPTTTFYDPAPDVYTEPIQHLDPEVNIKVENIEVELDFNDFANDTGLMVEGPHSEDSQEPAVKIEEQNHEAVLLTFESILKDENMLTHVADQNVLGYSHITAPAPNFVCKVCHLVFQTPKTLRMHQKRKHKAYRKSFRHICDYCGMAYEQKNSLVAHIKRKHGPNSVPDDLEERTCDICALVFKGIARLRMHMRRKHGSFEESFKYVCHDCGLTYDKQRSLIVHMQRKHSTEPKPVSNTWYNCPFCPKVFTKRETYVRHVQRKHRINDEDDKKEEELGTKEMRELSHCKNEHTGEITCKDCPLVFSSMNFLKLHMRRKHNALREDFRLKCMICNLSYDKVESLKRHIRRKHDKGTYCDVCQKQFATRDMYLGHTHKKMIQECHICGLVFASRGGLCKHLRCTHKIEAPKTVFCDVCNESFHDRRQLKPHYMKVHLQVSYTCRYCKKIFRAKESYRRHVLLKHPNQSQSENQQKCDHCPEMFSDEFELCKHINLAHRVQKGNEIGALTLIEVKKEEIEIPAKFQCTKCPENYDTWEELKLHYEQNHQKISNTQCQVCGEMVPELEIQKHIKVHRTNTMIQCRFCEFETSNRASMTQHMLRHKNATTLHCDFNGCRYKTYYELAMEKHKRKHEDLGLKLQCTQCPFQTMNKYILRYHEEAHATGKKRYMCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFKLITN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00205399; iTF_01151447; iTF_00802149; iTF_01092326; iTF_00642566; iTF_01017940; iTF_01018791; iTF_01017939; iTF_00954902;
- 90% Identity
- -
- 80% Identity
- -