Ehyp011054.1
Basic Information
- Insect
- Elymnias hypermnestra
- Gene Symbol
- -
- Assembly
- GCA_015832385.1
- Location
- JACTOM010000194.1:4425032-4427817[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00016 0.013 16.6 3.2 1 23 159 182 159 182 0.98 2 18 4.9e-05 0.0039 18.2 0.6 1 23 191 214 191 214 0.97 3 18 0.039 3.2 9.1 0.6 2 23 227 249 227 249 0.97 4 18 0.00029 0.023 15.8 0.9 1 23 258 281 258 281 0.97 5 18 1.3e-05 0.001 20.0 1.6 1 23 293 316 293 316 0.97 6 18 6.7e-05 0.0054 17.8 0.8 2 23 348 370 347 370 0.96 7 18 0.00053 0.043 15.0 0.9 2 23 380 402 379 402 0.96 8 18 0.084 6.8 8.0 0.6 2 20 407 425 406 427 0.89 9 18 0.004 0.33 12.2 4.1 2 21 432 451 431 454 0.94 10 18 0.3 24 6.3 1.5 3 23 464 485 463 485 0.95 11 18 0.0042 0.34 12.1 2.7 1 23 490 513 490 513 0.94 12 18 0.00025 0.02 16.0 0.7 2 23 524 546 523 546 0.96 13 18 0.0012 0.094 13.9 0.6 1 23 572 595 572 595 0.92 14 18 2 1.6e+02 3.7 0.0 2 23 602 623 601 623 0.89 15 18 0.0069 0.56 11.4 0.9 2 23 629 650 628 650 0.97 16 18 2.8 2.3e+02 3.2 2.2 3 23 658 680 656 680 0.92 17 18 0.016 1.3 10.3 0.2 1 23 716 738 716 738 0.97 18 18 0.2 16 6.9 2.0 1 23 744 767 744 767 0.96
Sequence Information
- Coding Sequence
- ATGTCTCTTGGAGAAGAAAAAATagatatagtaaatattaaagttgAAACTGAAGAAGATGATGATAGTCGAAAAGATCCAGCACTACTATTACCCGAAGAACCTATgacatatgaaataaaaacaaaaaagaaaaaaaaaaggaaaaaacaaGAAGATCCGTTTAAAGATATCGAAGAGAAAGTTAGTGCGCACATAACGACAATTTATGACCCAGTTAAAGAAGTCGATCAAGAACCAGTTTTAGACCCTGAAATCAATATAAAAGTTGAAAATATCGAAGTTGAATTAGATTTTAATGATtttGCAAATGATAATGGTTTAATGCTAGAGGCTCCACATAGTGAAGACAGCCAAGAAACTGCTGCAAAGGTCGATGAACACAACCGAGATGCAGTGCTTTTAACTTTCGAAAGTATACTTAAGGACAAAGGTGTTCTAGGATACAGTCCATTAACAGCCCCTGCGCCTAATTATGTGTGCAAAGTTTGCCATTTAGTCTTTCAAACCCCAAAAACACTTCGTATGCACCAAAAGAGAAAGCATCAAGTTTATCGAAAATCATTTAAACATGTTTGTGACTACTGTGGAATGGCGTACGAACAAAAAAATAGTCTCGTGGCTCATATTAAGAGAAAACACGGACCTGATGCAATACCCGATGATATAGAAGAAAGGACTTGCGATGTGTGTGCATTAGTATTCAAGGGCATAACACGATTACGTATGCATATGCGAAGAAAACATGGATCTTTTGAAGAATCGTTCAAACATGTCTGCCAAGAGTGTGGCCTAACTTACGATAAGAATAGAAGCCTCATTGTCCACATTCAGAGAAAACATTCAAGTGGTCCAAAGCCAGAGCTGGACACCTGGTACAAATGTCCATTTTGTCCGAAAGTCTTCACCAAACGCGAAACATACGCGAGACACGTCCAAAGAAAGCATCGTATAAATGATGAAGACAATGCGATACAACACAATAATGGAGATGGCAAGAACGAGTTAATACACAGCAAAAATGAAGAAACAGGAGAGATTTCATGTAAAGAATGCCCTCTAGTATTTTCTTCATTGAATTTTCTAAAACTGCACATGAGAAGGAAGCATAATGCGTTGAAGGAAGATTTCAGACTGAAATGTATGATATGCAATTTATCCTACGATAAGGTCGAGAGTTTGAAACGCCACATAAGGCGGAAACACGACAAAGGATCTTACTGTGACGTTTGTGACAAACAATTTGAAACTAGAGAAATGTACCTTGGTCACACACACAAAAGAATGATACAAGAGTGTCACCTCTGCGGTTTGGTATTTGCATCAAGAGGGGGCCTATGTAAACATTTACGGTGTACCCACAAAATTGAACCACCAAAAACTGTGTTCTGCGATTTGTGCGCGGAAAGTTTTCATGATAAACGACAGTTAAAACCTCATTATATGAAGGTCCATTTGAATGTTGCGTACACCTGTCGGTTTTGTAagaagatttttagagcaaaggAGAGTTACAGGCGGCATGTACTTCTCAAACACGCTAATCATAATCAAACTCAGAGCCAACAGCAATGTGATCAGTGCCCAGAGAGATTTACCGACGAATTTGAATTGTGCAAGCATGTTAACATAGCTCACCGTACACAGAAATTTGAAATTGGGGCACCAACgtttatagaaataaagaaagaagaaatGGAAATACCGGCTATGTTTCAGTGCACAAAGTGTCCAGAAAATTATGAGAATTGGGAACTTTTAAAGTCTCATTTTGAACAGAACCATCAAAAGTTGCTCAACACCCAATGCCAAGTTTGTGGTGAAATGGTACCAGAAGTCGACATTCAGAAACACATTAAAGTGAACCATACAGACACCACAGTTCAATGTAGATATTGTGAATTTGAAACATCCAACCGGGCTAGTATGACTCAACATATGTTACGACATAAAAATGCAAAGACTTTACATTGTGACTTCTCcggttgtaaatataaaacttactaTGAGGGTGCGATGGAGAAACACAAAAGGAAGCATGCTGATCTTGGATTAAAGCTACAATGCTCCCAATGTCCATTCCAgacaatgaataaatatattttaaaatatcatgaaGAAGCCCATACTACAGGCAAAAAACGTTATTCCTGTGACCAATGCGATTATGCCACTATTTTACCAGCGAATTTAGTTCAACACAAATATAAACATTCCTCAGAGAAGAGGTTCAAATGTGAAGTATGTCCATTCGCAACAAAGTACAATACGTCTTTACGTTTTCATGTTAAGAAGAAACATTGTGATCTCCCGTCATTCAAATTAATATCTAATTAA
- Protein Sequence
- MSLGEEKIDIVNIKVETEEDDDSRKDPALLLPEEPMTYEIKTKKKKKRKKQEDPFKDIEEKVSAHITTIYDPVKEVDQEPVLDPEINIKVENIEVELDFNDFANDNGLMLEAPHSEDSQETAAKVDEHNRDAVLLTFESILKDKGVLGYSPLTAPAPNYVCKVCHLVFQTPKTLRMHQKRKHQVYRKSFKHVCDYCGMAYEQKNSLVAHIKRKHGPDAIPDDIEERTCDVCALVFKGITRLRMHMRRKHGSFEESFKHVCQECGLTYDKNRSLIVHIQRKHSSGPKPELDTWYKCPFCPKVFTKRETYARHVQRKHRINDEDNAIQHNNGDGKNELIHSKNEETGEISCKECPLVFSSLNFLKLHMRRKHNALKEDFRLKCMICNLSYDKVESLKRHIRRKHDKGSYCDVCDKQFETREMYLGHTHKRMIQECHLCGLVFASRGGLCKHLRCTHKIEPPKTVFCDLCAESFHDKRQLKPHYMKVHLNVAYTCRFCKKIFRAKESYRRHVLLKHANHNQTQSQQQCDQCPERFTDEFELCKHVNIAHRTQKFEIGAPTFIEIKKEEMEIPAMFQCTKCPENYENWELLKSHFEQNHQKLLNTQCQVCGEMVPEVDIQKHIKVNHTDTTVQCRYCEFETSNRASMTQHMLRHKNAKTLHCDFSGCKYKTYYEGAMEKHKRKHADLGLKLQCSQCPFQTMNKYILKYHEEAHTTGKKRYSCDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSFKLISN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01021537;
- 90% Identity
- -
- 80% Identity
- -