Paeg013264.1
Basic Information
- Insect
- Pararge aegeria
- Gene Symbol
- -
- Assembly
- GCA_905163445.1
- Location
- NC:2295688-2302416[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00015 0.0061 16.5 3.2 1 23 175 198 175 198 0.98 2 18 0.0027 0.11 12.6 0.6 1 23 207 230 207 230 0.96 3 18 0.036 1.5 9.0 0.6 2 23 243 265 243 265 0.97 4 18 0.00048 0.019 15.0 2.3 1 23 274 297 274 297 0.97 5 18 3.8e-05 0.0016 18.4 1.3 1 23 309 332 309 332 0.97 6 18 4.7e-05 0.0019 18.1 0.8 2 23 366 388 365 388 0.97 7 18 0.00049 0.02 14.9 0.9 2 23 398 420 397 420 0.96 8 18 0.18 7.4 6.8 0.5 3 20 426 443 424 445 0.89 9 18 0.001 0.041 13.9 3.7 2 21 450 469 449 472 0.94 10 18 0.036 1.5 9.0 2.1 3 23 482 503 481 503 0.95 11 18 0.0014 0.056 13.5 2.7 1 23 508 531 508 531 0.94 12 18 0.0019 0.078 13.1 3.1 2 23 542 564 541 565 0.96 13 18 0.00036 0.015 15.3 0.9 1 23 590 613 590 613 0.94 14 18 5.2 2.1e+02 2.3 0.4 2 23 620 640 619 641 0.80 15 18 0.0068 0.28 11.3 0.9 2 23 647 668 646 668 0.97 16 18 5.6 2.3e+02 2.1 2.6 3 23 676 698 674 698 0.91 17 18 0.012 0.49 10.6 0.2 1 23 734 756 734 756 0.97 18 18 0.18 7.5 6.8 2.0 1 23 762 785 762 785 0.96
Sequence Information
- Coding Sequence
- atgaTGGAATCGACAAACACGTCGATCAAAGACGAGAAGCCAgatataaaagatataaaaatcgaGAAAACAGAGGATGACAGTAGAAAAGACCCCACTTCCTTCTTGCCAGAAGAAGCAATGTCTTACGAAATCAAgcctaagaaaaagaaaaagaagaaaaagaaagttgTAATGGAAGACCCCTTTAAAGATATAGAGGAGAAAGTCAGTTTACCAACTTCCACATTCTACGATCCAGTTACAGATGCTGATCAGGGATCATTGGATCCAGAAGTTAATATAAAGGTTGAGAATATTGAAGTAGAGTTGgattttaatgatTTTGCAAACGACAGTGGCTTGATGCTAGAGGGCCCTCAAAGTGAAGAGAGTCAGGAGCCGGCTGTGAAAATAGAAGAGCAGAACCACGAAGCAGTGCTTCTAACTTTCGAAAGTATACTTAAGGAAAAGAACCTCTTGAGTTACGCCCCAGACGAAAACGTCTTGGGATACAGCTCCATCACAGCCCCCGCACCGAACTATGTCTGCAAAGTATGCCACCTAGTGTTCCAAACACCGAAAACTCTGAGAATGCATCAAAAAAGGAAGCATAAATCTTACCGAAAGTCTTTCAAACATATATGTGATTACTGCGCCATGGCTTATGAACAGAAGAACAGTTTAGTAGCGCATATAAAAAGGAAACACGGACCGAACTCAGTACCTGACGATTCCCAGGAACGAACGTGCGACGTGTGTGCTCTAGTCTTCAAAGGAATAACGAGATTGCGTATGCATATGAGAAGGAAACATGGCTCTTTCGAGGAGTCCTTTAAACATGTTTGCGAAGAGTGCGGATTGACGTATGACAAGCATAGGAGTTTAATCGTCCATATGCAAAGAAAACATTCGAACGCACCCAAACCAGAGTTGGACACTTGGTACAATTGCCCGTTCTGCCCCAAAGTGTTCACCAAAAGGGAGACTTACGCGAGGCATGTTCAAAGGAAACATCGGATAAACGATGACGAGAACGAGAAACAAATGCAGGAACGAGAAAAACGGGAAACCAAGGAATTAATGCATTGCAAGAATGAAGAAACGGGAGAGATTACGTGCAAGGAATGCCCACTTGTTTTCTCTTCATTAAACTTCTTGAAACTGCATATGAGAAGAAAACACAATGCGTTGAAAGATGATTTCAGATTGAAATGTATGATATGCAATCTCTCCTATGATAAAGTTGAAAGTTTAAAACGTCATATTAGAAGGAAGCATGATAAGGGAACTGATTGTGATGTTTGCGAGAAGAAATTCGAAACTCGCGAAATGTATCTCGGCCACACACACAAGAGAATGATTCAGGAATGCCACATTTGCGGTTTAGTGTTCGCGTCTAGAGGGGGGCTATGTAAACATTTACGATGCACCCACAAAATTGAATCACCCAAAACTGTGTTTTGTGATTTGTGCAATGAGAGCTTCCACGATAAACGACAGTTAAAACCTCATTACATGAAAGTTCATTTGAAAGTGTCGTACACATGTCGATTTTGCAAAAAAGTGTTCCGGGCAAAGGAAAGTTACAGACGGCATGTGTTATTAAAACATCCGAATTTCAATCAAGGTCAGAGTCAGCAAAAATGTGATCAATGCTCTGAAATGTTCATAGATGAATTTGAACTGTGCAAACATATCAATAAAGTTCACCATACACCCAACACTGATACAGGTGCCCCAACTGTGGTAGAAGTAAAGAAGGAAGAACTAGATATACCAGCCATGTTCCAATGCACGAAATGTCCagaaaactatggcagttggGAACACCTAAAAGTGCATTATGAGTTGAACCATCAAAAAATTGCAAACACACAGTGTCAAGTCTGTGGTGAAATGGTCCCAGAGTTAGATATACAGAAGCATATCAAACTACACCATACTGATACGACGGTGCAGTGTAGATACTGTGAATTTGAAACAACCAATCGTGCGAGTATGACCCAGCATATGCTGAGACATAAAAATGCAACTACACTACACTGTGATTTCAATGGTTGTagatacaaaacatattatgAAGGTGCCATGAACAAACACAAGAGAAAACACGAAGATTTAGGTGTCAAACTTCAGTGTACTCAATGCCCATTCCAgacaatgaataaatacattctAAGATATCACGAGGAAGCTCATGCAACTGGCAAAAAGAAATACATGTGTGACAAATGTGACTATGCAACTATTCTACCAGCTAATTTAGTACAGCATAAATACAAACATTCAGCAGAAAAGCGGTTTAAGTGTGAAGTCTGCCCATTTGCTACGAAGTACAATACGTCGTTGCGTTTTCACGTTAAGAAAAAACATTGTGATCTTCCaacattcaaattaatatcaaattga
- Protein Sequence
- MMESTNTSIKDEKPDIKDIKIEKTEDDSRKDPTSFLPEEAMSYEIKPKKKKKKKKKVVMEDPFKDIEEKVSLPTSTFYDPVTDADQGSLDPEVNIKVENIEVELDFNDFANDSGLMLEGPQSEESQEPAVKIEEQNHEAVLLTFESILKEKNLLSYAPDENVLGYSSITAPAPNYVCKVCHLVFQTPKTLRMHQKRKHKSYRKSFKHICDYCAMAYEQKNSLVAHIKRKHGPNSVPDDSQERTCDVCALVFKGITRLRMHMRRKHGSFEESFKHVCEECGLTYDKHRSLIVHMQRKHSNAPKPELDTWYNCPFCPKVFTKRETYARHVQRKHRINDDENEKQMQEREKRETKELMHCKNEETGEITCKECPLVFSSLNFLKLHMRRKHNALKDDFRLKCMICNLSYDKVESLKRHIRRKHDKGTDCDVCEKKFETREMYLGHTHKRMIQECHICGLVFASRGGLCKHLRCTHKIESPKTVFCDLCNESFHDKRQLKPHYMKVHLKVSYTCRFCKKVFRAKESYRRHVLLKHPNFNQGQSQQKCDQCSEMFIDEFELCKHINKVHHTPNTDTGAPTVVEVKKEELDIPAMFQCTKCPENYGSWEHLKVHYELNHQKIANTQCQVCGEMVPELDIQKHIKLHHTDTTVQCRYCEFETTNRASMTQHMLRHKNATTLHCDFNGCRYKTYYEGAMNKHKRKHEDLGVKLQCTQCPFQTMNKYILRYHEEAHATGKKKYMCDKCDYATILPANLVQHKYKHSAEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFKLISN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01021537;
- 90% Identity
- -
- 80% Identity
- -