Hsem011892.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000168.1:1418607-1422230[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0002 0.01 16.6 3.2 1 23 171 194 171 194 0.98 2 17 0.0001 0.0053 17.5 0.6 1 23 203 226 203 226 0.96 3 17 0.014 0.74 10.7 0.4 2 23 239 261 239 261 0.97 4 17 0.0018 0.097 13.5 2.3 1 23 270 293 270 293 0.96 5 17 5e-05 0.0027 18.4 1.3 1 23 305 328 305 328 0.97 6 17 9e-05 0.0048 17.6 0.7 2 23 360 382 359 382 0.96 7 17 0.00051 0.027 15.3 0.7 2 23 392 414 391 414 0.96 8 17 0.25 13 6.8 1.0 2 20 419 437 418 439 0.89 9 17 0.003 0.16 12.8 4.0 3 21 445 463 444 466 0.95 10 17 0.038 2 9.4 2.4 3 23 476 497 475 497 0.96 11 17 0.0052 0.27 12.1 2.7 1 23 502 525 502 525 0.94 12 17 0.00028 0.015 16.1 0.9 2 23 536 558 535 558 0.96 13 17 0.00025 0.013 16.2 0.5 1 23 584 607 584 607 0.94 14 17 0.0031 0.17 12.8 1.4 2 23 641 662 640 662 0.97 15 17 9.9 5.2e+02 1.8 2.4 3 23 670 692 668 692 0.92 16 17 0.024 1.3 10.0 0.1 1 23 728 750 728 750 0.97 17 17 0.24 13 6.8 2.0 1 23 756 779 756 779 0.96
Sequence Information
- Coding Sequence
- atgtcAATAAAAGAGGAGAAACCcgatataaaaaatttaaaaaccgaGAAACTAGATGACGACAAGAGAAAAGATCCAACCACTTTGTTGCCAGAGGAGCCAATGTCGTATGAAATAAaggtaaagaagaagaagaaaaagaaaaagaaagatttATTGGAGGATCCTTTCAAAGATATTGAGGAGAGAGTCAAATTGCCGACTCAGGCATTCTATGATCCAGTTGGGGAAGCTGATCCGGAACAGTCGGTTCTGGATCCAGAAGTTACTATCAAGGTGGAGAATATTGAGGTGGAGTTGGACTTCAATGATTTCGCAAATGACAATGGGTTAATGGTAGAGGGTCCTCAAAGTGAAGAGAGTCAAGAACCGGCTGTGAAAATCGAAGAACAGAACCATGAAGCTGTACTTTTAACTTTTGAAAGTATACTTAAAGAGAAAAACCTCTTACGTTACAATCCGGACGAAAATGTCTTAGGTTATAATCTCAACACAGCACCTGCACCAAATTATGTGTGCAAGGTATGCCATCTAGTCTTTCAAACTCCGAAAACTTTAAGAATGCATCAAAAAAGAAAGCATAAAGTATACCAAAAGTCGTTTAAACATATATGTGATTACTGTGGTATGGCTTACGAACAGAAAAACAGCCTTGTTGCACACATAAAGAGGAAACACGGTCCCAACTCCATACCTGAAGATCCTGAAGAAAGAACATGTGATGTATGTGCTCTGGTTTTTAAAGGATATGCAAGATTGCGAATGCACATGAGGAGGAAGCATGGATCTTTTGAGGAGTCCTTCAAACATATTTGCGAGGAATGTGGGCTAACTTATGATAAACATAGAAGTTTAGTAGTCCATATGCAAAGAAAACATTCAAATGAACCCAAGCCAGAGTTGGACACTTGGTATAATTGCCCATTCTGCCCAAAGGTATTTACTAAAAGAGAAACATACGCGCGTCATGTGCAAAGAAAGCATCGAATAAACGACGAAGAGAATAATAAACAAGACGAAAGAAAGGAGAAATTGAAGGATTTATTAAATTGCAAGAATGAGCAAACTGGTGAAATTATGTGCAAGGAATGCCCTCTAGTTTTTTCGTCATTAAACTTCTTGAAATTGCACATGAGAAGAAAACACAATGCGTTAAAGGaagattttaaattgaaatgtgTGATATGTAATCTCTCGTATGATAAAGTCGAAAGTTTGAAACGTCATATTAGAAGGAAACATGATAAGGAATTGTATTGTGATGTTTGCGAAAAACATTTTGAAACGAGAGAAATGTATCTTGGGCATACACATAAAAGAGTGATTCAAGATTGTCATATTTGTGGTTTAGTTTTCGCTTCTCGAGGGGGTTTGTGTAAACATTTGCGGTGTACTCACAAAATTGAGACTCCCAAAACTGTTTTCTGTGATTATTGCACCGAAAGTTTTCACGATAAACGCCAATTAAAACCTCATTACATGAAAGTCCATTTAAAAGTGTCGTATACgtgtcgattttgtaaaaaaatctttagagCAAAAGAGAGTTATAGACGCCATGTCCTATTGAAACATCCGAATTTtaatgaaagtcaaaataatcAGAAATGTGACCAGTGTACAGAAACATTCGCAGATGAATTTGAATTGTGTAAACATATCAATATAGCTCATAGGGCACCCAAAACTGAGATAGGTGCTCCAACtttaatagaaattaaaaagGAAGAAATGGACATACCACCTTCCTTTCAATGCAATAAATGTCCTGAGAACTATGAGAGTTGGGACCAGTTAAAACTACATTATGAGCAAAACCATCAAACAATTACTCACACCCAGTGTCAAGTGTGTGGTGAAATGGTGCCAGAACTGGAAATCCAGAAGCATGTAAAACTACACCAAGCAGATGCAACAGTACAATGTAGATATTGTGAATTCGAAACATCCAATCGTTCAAGTATGACTCAACACATGTTAAGGCATAAAAATGCAACAACTCTACACTGTGACTTTGCGGGCTGTAGATACAAAACTTATTATGAACGTGCCATGGAAAAACATAAGAGAAAACATGAAGACATAGGCGTAAAACTCCAGTGTTCACAATGCCCTTTCCAGAGtatgaataaatatattctaaAATATCACGAAGAGGCCCATGCGACTGGTAAAAAGAGATATATGTGTGACCAATGTGACTATGCAACCATATTACCAGCAAATTTAGTCCAACATAAATACAAGCACTCTACAGAAAAGCGGTTTAAATGTGAAGTCTGCCCATTCGCCACGAAGTACAACACGTCATTACGTTTTCACGTAAAGAAAAAACATTGTGATCTCCCTACATTCAAATTAAtgtctaaataa
- Protein Sequence
- MSIKEEKPDIKNLKTEKLDDDKRKDPTTLLPEEPMSYEIKVKKKKKKKKKDLLEDPFKDIEERVKLPTQAFYDPVGEADPEQSVLDPEVTIKVENIEVELDFNDFANDNGLMVEGPQSEESQEPAVKIEEQNHEAVLLTFESILKEKNLLRYNPDENVLGYNLNTAPAPNYVCKVCHLVFQTPKTLRMHQKRKHKVYQKSFKHICDYCGMAYEQKNSLVAHIKRKHGPNSIPEDPEERTCDVCALVFKGYARLRMHMRRKHGSFEESFKHICEECGLTYDKHRSLVVHMQRKHSNEPKPELDTWYNCPFCPKVFTKRETYARHVQRKHRINDEENNKQDERKEKLKDLLNCKNEQTGEIMCKECPLVFSSLNFLKLHMRRKHNALKEDFKLKCVICNLSYDKVESLKRHIRRKHDKELYCDVCEKHFETREMYLGHTHKRVIQDCHICGLVFASRGGLCKHLRCTHKIETPKTVFCDYCTESFHDKRQLKPHYMKVHLKVSYTCRFCKKIFRAKESYRRHVLLKHPNFNESQNNQKCDQCTETFADEFELCKHINIAHRAPKTEIGAPTLIEIKKEEMDIPPSFQCNKCPENYESWDQLKLHYEQNHQTITHTQCQVCGEMVPELEIQKHVKLHQADATVQCRYCEFETSNRSSMTQHMLRHKNATTLHCDFAGCRYKTYYERAMEKHKRKHEDIGVKLQCSQCPFQSMNKYILKYHEEAHATGKKRYMCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFKLMSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01021537;
- 90% Identity
- iTF_01092326;
- 80% Identity
- -