Mdia003669.1
Basic Information
- Insect
- Meloe dianella
- Gene Symbol
- -
- Assembly
- GCA_028455855.1
- Location
- JAPTHL010000015.1:4289991-4295981[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00025 0.015 15.3 1.2 2 23 178 200 178 200 0.97 2 21 1.5 92 3.4 3.5 1 21 316 336 316 337 0.92 3 21 1.1 65 3.9 6.0 1 23 366 389 366 389 0.92 4 21 0.24 14 5.9 0.1 5 19 399 413 397 416 0.91 5 21 0.037 2.3 8.5 1.1 1 23 422 445 422 445 0.91 6 21 2.4 1.5e+02 2.8 0.1 10 23 526 539 523 539 0.90 7 21 0.068 4.1 7.7 0.8 1 23 556 577 556 577 0.90 8 21 4.5e-05 0.0027 17.7 0.3 3 23 582 602 581 602 0.97 9 21 4e-05 0.0024 17.8 0.2 2 23 632 653 631 653 0.97 10 21 0.002 0.12 12.5 0.3 1 23 684 707 684 707 0.97 11 21 1.2 75 3.7 0.5 2 23 721 742 720 742 0.95 12 21 0.00065 0.039 14.0 8.3 1 21 784 804 784 806 0.95 13 21 0.069 4.2 7.6 1.4 3 23 827 848 827 848 0.93 14 21 0.0003 0.018 15.1 2.3 1 23 873 895 873 895 0.98 15 21 4.5e-06 0.00027 20.8 1.1 2 23 913 935 912 935 0.96 16 21 5e-05 0.003 17.5 0.1 1 23 955 977 955 977 0.94 17 21 0.13 7.7 6.8 0.1 1 23 1009 1032 1009 1032 0.95 18 21 0.0042 0.25 11.5 2.8 2 23 1044 1065 1043 1065 0.97 19 21 9.1e-05 0.0055 16.7 0.5 1 23 1075 1098 1075 1098 0.96 20 21 4.9e-06 0.00029 20.7 0.3 1 23 1106 1128 1106 1128 0.98 21 21 0.00074 0.044 13.9 0.1 1 23 1141 1164 1141 1164 0.96
Sequence Information
- Coding Sequence
- ATGGCAGATTTCAGTACGTGCTGTAGACTTTGCCTTAATGAGAAACTGGACACTATCAAGTCTATATTTGATGATGCTATAGATGATCGGACATTGCCACAGAAAATTTTAGCCTCTGTTGCTATTGAAGTGACATCAGTGGACAAATTAACGACAATGATCTGCACCCAATGCATTGAGAATGTCAATAATTATTACATTTTCAAAAAATCGTGCTCTGAAAATCAAAAGAAATTAGAGGAATGGTTGAAGTTGAATGGCTCGGAGACGAATATTCAAATCAAAGAGGAACCAATTGATACAGAACCACCAGAATCACCTGAAGTTATAATTAGTGGTGATATACCTGCGGTTAAACCAGAACCAATCGATGATGAAGATCTACCACCACCATTAACACCACATGATCATAATGGTGATGATAACAGTGAAATGGATATTGAGATGGCAGAAAATGATCAAACACAAATAGAAGAACAAAATAATGAACGACATGAAGATGATGCTCCTAATTTGGAGCTTGATCCGCGCAGATGTACAATTTGTGATAAATTGTTTAGTTCGCGTGCAAATCGTAAGAAACATGAACGCGTCATCCATGGGGTTAATCATAATGTTAATGGAGATGTTTCACTGTCACAAGATGATCGTTCGCAGAGTTCATCTGATTCTCAAGCTGTATCAAAACCAACACCACAACCAACAGAACCAACAGCTGAAGAAAAGAAGATCCTGTTTGCGGCTGGTTTAAAATTATTACAAACAAATTCAACACCACCAATATCATTAGAGACATTATCAAAAATTGAATTGAGCTATATAGAAAAATGTAAAGCAATGACCATAATGTATCATACATTAATTTGTGCATGCCATAGTGTGCCACATCCAAATTTAAAAGGTTTATTGTCACATTTACGTTCAATTGGTATATGGTTTCCAGTATTCACATGTTATCACTGTATGATAACATTTACTGATCGTTCATCAAGTACACGACATCATTTGCGTTGTACACGTACAAATTTGGAAACATTAGTGAAATTATCGAATTTGAAGAAACGTAGTGAAGTGAAGACACGTTTATATCAACTTTATAAATGTACGAAATGTCGTTTTATGTATAGTTTCCATGAAGATTTCTGTACGCATGTTGATGAAGAACATTCAGATATTATGTTTCCAATGACATGTACGTGCGGTCGGATTTTCACAAATTTAGAAGATTTCAAAGATCATGCTTATGTTAGTTGTTTAGTTGAATTCTATTGTGATGTTTGTCATACAACTTTAAAAACGTTAGATGCATTCCAAATGCATGCTAGTGAAAATCACGATAATTCTGATGGTTTCCCATTAGTGCAAGATGATGGTTATAAACAGAGACGTGAACGTTGCTCATTGCCGAATGTGGCTGCTGTGAAACGTGAACATTCTGAGAATAATATTGTCTATGGTAAACGTCGCAGTACATTTTATAAACAACGCTTTATTGATAGCGAAGAAGAGTACGCTAGTAGTGGTGGTGGTGGTGGTGGTACTGGTACTGGTAGTAAAGTAATTAATCCGATAGAATATGCAACAAATAATAACATGTTGCGACATTATCGTAGTCATGCATTTGATGATAAAAACGATAATATACAAAATAAAGATGATTCATTGTATTGTTGTCCAGATTGTGGTGGTATGTTCACATCAATTGAATGGGAGAAACATAAAGAACAACATAATAAGAAAATTTGCAATGAATGTGGTAAAATATTCCAATTTCAATCCGAATTAGAACAACACAGAAGTGTCCATTTGAATTTGAAAGTTTATCGTGATTCAAAAACACAATCATACAGGAGTACAATGGCAAGTCCTAATGGTGATACAAATATTGTTGTAATGTGTGAAATTTGCGACACAATCTTCCCAACAAAAGAACAATTAAAAGAACATAAATTAACACACGAACCACAACAAAAACCACCACCACCACAACAACAACAACAACAAGACACTGAAGAAGATGATGATAATCATCATAGTGTGGTAAAGAAGTATAAATGTACAATCTGTAATAAAGGCTATGCTGGCTATGGTGGTTTATGGGAGCATAATCGAAAGAAACATCCAGAAAATAAATCGCCGTTCTGTAAAGATTTCCCAAAAGAATGTAAAGCCTGTGATAAGCTTTTCTATACTGGTGGTTCATGGTATATGCATAAGCAAATGCATGAAAGAACACAAACAAATTTATTGAATATCAAACAACAGCAACAACAACAACAAAAAGAATCAAGTTCATCATCACCTTATTCACAAGTTGATGATGAAACTGTTGATGATTCCGAATCATATCACACATGTAAACGTTGTTTTAAAGTATTTTCAAATCGTTATAACTTAAAGAATCACATGAAATGTCATGGCATTAATGTACATCCCGTTACGAAAACATCTCTGAAAGGTAAAGGTAAGAAGGTATGGTGTGATGTTTGCCATTCACCATTTGATAGTAGCCAACAATTAAAACAACATAAATCTGAGGAGCATGCAGAAACTGAAGATACAATGCCAAGTTTATCTGATGAACAAGAAGAGATTGATGTGAAAGCACCGTTTATATTCACATGTGATGTATGTGTCCAAACATTTACAACAAAATTATCATTAAAGAAACATAAAGAGAAACATGCACAAGAACGTGGTGGTATGTTTATGCATCCAAATAAACGCAATACAGTTTATTGTAAATATTGTAAAGTGTCATTTACAAATTCGGATCAGTTGAATTATCATATGCGCCAAGAACATAACGAACCTGTTGTTGGACGTATGACAACCACGAAAATCAAAGATAAATCGAAAAATTTCGTTTGCAATATTTGCAATAAACCATTCCAAAGTTCATCAGCATTATATGCACATTTAGGTTGGCATAAACGTGGCAAAATTTATGAACAATACGTGCCAGAAACACGTAATCCAATTAAAGTTAAAATCAAACAGGAACCAAAAGATGATTTGCCACAATTCAAATGTAATACATGCAAAGCGATATTACCAAATGATACAGCATTACAAATTCACATATTAGAAAAACATCGTGATATTAATGCAATTGTATTGCCAACAACTAGATGTAATATGTGCAATTTAGATTTTACATCGCATGATGAATATGAACAACATAAACGATTACATAATATTGTTGAAAATCCAAGGAAAACATTTCCATGCAATCATTGTCCGGCTGCATTCAGTCGTATAGAAACATTAAATGCACATTTAAAACAATATCATATTGATCAAATTAAACAGGAATATAATTGTCCACAATGTAATCGTATATTCGATAAGCCAAGTTCATTAACAATACATTTGAAGGTACATGAAAAGCAACGTATGAATGCACCATCAAGACCGTTATTTTCATGTTCCATATGCAATTTAGGTTTTAATTTGCCGAAAGATTTACGAGCTCATACAATTAAAGCCCATCCATTTTGA
- Protein Sequence
- MADFSTCCRLCLNEKLDTIKSIFDDAIDDRTLPQKILASVAIEVTSVDKLTTMICTQCIENVNNYYIFKKSCSENQKKLEEWLKLNGSETNIQIKEEPIDTEPPESPEVIISGDIPAVKPEPIDDEDLPPPLTPHDHNGDDNSEMDIEMAENDQTQIEEQNNERHEDDAPNLELDPRRCTICDKLFSSRANRKKHERVIHGVNHNVNGDVSLSQDDRSQSSSDSQAVSKPTPQPTEPTAEEKKILFAAGLKLLQTNSTPPISLETLSKIELSYIEKCKAMTIMYHTLICACHSVPHPNLKGLLSHLRSIGIWFPVFTCYHCMITFTDRSSSTRHHLRCTRTNLETLVKLSNLKKRSEVKTRLYQLYKCTKCRFMYSFHEDFCTHVDEEHSDIMFPMTCTCGRIFTNLEDFKDHAYVSCLVEFYCDVCHTTLKTLDAFQMHASENHDNSDGFPLVQDDGYKQRRERCSLPNVAAVKREHSENNIVYGKRRSTFYKQRFIDSEEEYASSGGGGGGTGTGSKVINPIEYATNNNMLRHYRSHAFDDKNDNIQNKDDSLYCCPDCGGMFTSIEWEKHKEQHNKKICNECGKIFQFQSELEQHRSVHLNLKVYRDSKTQSYRSTMASPNGDTNIVVMCEICDTIFPTKEQLKEHKLTHEPQQKPPPPQQQQQQDTEEDDDNHHSVVKKYKCTICNKGYAGYGGLWEHNRKKHPENKSPFCKDFPKECKACDKLFYTGGSWYMHKQMHERTQTNLLNIKQQQQQQQKESSSSSPYSQVDDETVDDSESYHTCKRCFKVFSNRYNLKNHMKCHGINVHPVTKTSLKGKGKKVWCDVCHSPFDSSQQLKQHKSEEHAETEDTMPSLSDEQEEIDVKAPFIFTCDVCVQTFTTKLSLKKHKEKHAQERGGMFMHPNKRNTVYCKYCKVSFTNSDQLNYHMRQEHNEPVVGRMTTTKIKDKSKNFVCNICNKPFQSSSALYAHLGWHKRGKIYEQYVPETRNPIKVKIKQEPKDDLPQFKCNTCKAILPNDTALQIHILEKHRDINAIVLPTTRCNMCNLDFTSHDEYEQHKRLHNIVENPRKTFPCNHCPAAFSRIETLNAHLKQYHIDQIKQEYNCPQCNRIFDKPSSLTIHLKVHEKQRMNAPSRPLFSCSICNLGFNLPKDLRAHTIKAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01566426; iTF_01022408; iTF_00814561; iTF_00813875; iTF_00929770; iTF_01366511;
- 90% Identity
- -
- 80% Identity
- -