Zimm011542.1
Basic Information
- Insect
- Zonitis immaculata
- Gene Symbol
- -
- Assembly
- GCA_037414775.1
- Location
- JAZBGX010006526.1:1-3320[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00017 0.0099 16.0 1.0 2 23 10 32 10 32 0.97 2 20 1.5 84 3.7 3.5 1 21 145 165 145 166 0.92 3 20 1 59 4.1 6.0 1 23 195 218 195 218 0.92 4 20 0.0056 0.32 11.3 0.7 1 23 251 274 251 274 0.91 5 20 5.2e-05 0.003 17.7 0.5 2 23 359 380 358 380 0.97 6 20 0.036 2.1 8.7 1.2 1 23 398 419 398 419 0.89 7 20 4.3e-05 0.0025 17.9 0.3 3 23 424 444 423 444 0.97 8 20 4.2e-05 0.0024 17.9 0.2 2 23 475 496 474 496 0.97 9 20 0.003 0.17 12.1 0.5 1 23 519 542 519 542 0.97 10 20 1.7 99 3.4 0.6 2 23 556 577 555 577 0.92 11 20 0.00062 0.036 14.3 8.3 1 21 617 637 617 639 0.95 12 20 0.061 3.5 8.0 1.1 3 23 660 681 660 681 0.93 13 20 0.00029 0.017 15.3 2.3 1 23 706 728 706 728 0.98 14 20 4.8e-06 0.00028 20.9 1.3 2 23 745 767 744 767 0.96 15 20 0.00047 0.027 14.6 0.1 2 23 785 806 785 806 0.93 16 20 0.12 7 7.1 0.1 1 23 838 861 838 861 0.95 17 20 0.00082 0.048 13.9 1.1 2 23 873 894 873 894 0.97 18 20 0.00019 0.011 15.9 0.5 1 23 904 927 904 927 0.96 19 20 4.3e-06 0.00025 21.1 0.6 1 23 935 957 935 957 0.98 20 20 0.0007 0.04 14.1 0.1 1 23 970 993 970 993 0.96
Sequence Information
- Coding Sequence
- GGTCATAATTTGGTGTTTGATCCACGTCAATGTACAATTTGtgataaattgtttagttCGCGAGCAAATCGTAAGAAACATGAACGCGTTGTCCATGGTATCAATGCTAACATTAATGGAGTTTcTGTAATATCATACGATGATCAATCGCAAAGTTCATGTGATTCTCAAGCTATATCGAATACAACAAGTGAACCAACAGctgaagaaaagaaaattctatttgcAGCCggtttaaaattattacaaacaaattcaacaCCACCAATATCATTAGAGacattatcaaaaattgaattgagttatatagaaaaatgtaaAGCAATGGCTATAATGTATCATTCATTAGTATGTGCATGTCATAGTGTACCACATCCAAATTTGAAAGGTCTCTTATCACATTTACGTTCAATTGGTATATGGTTTCCTGTATTCACATGTTATCATTGTATGATAACATTTACTGATCGTTCATCTAGTACAAGACATCATTTACGTTGTACACGTACAAATCTagaaacattaattaaattatcgaatttgaaGAAACGTAGTGAAGTTAAGACAcgtttatatcaaaattataaatgtacAAAATGTCGTTTCATGTATAGTTTCCATGAAGATTTTTGTACACATGTCGATGAAGAACATTCTGataaacaatttccattgaCATGTACATGTGgtcgattatttttaaatctagAAGATTATAAAGACCATGCTTATGTTAGTTGTTTAGTTGAGTTTTATTGTGATATTTGCCATATCACATTGAAAACATTGGATGCATTTCAAAAACATGCCATCGAAAATCACGACCAATCGGAAGGTTTTGAATTAGTACGCGACGATGGTTATAGACAAAGACGTGAACGCTGCTCATTACCAAATGTGGCAGCTGTTAAACGTGAACATTccgaaaataatattatttacagTAAACGTCGCAGTACTTTCTATAAACAACGATTTGTTGATAGTGAAGAGGAatatgatggtggtggtggtggtgttagTAGTGGTAGTAAAGTAATAAATCCGatgattttacaaaaaatccCCGGAAAAGTATGTCCGATTTGTTCAAGAGAATAtgcaacaaacaacaacatgttACGTCATTATCGCACCCATacattcaatgataaaatggATAATCATCcacaaaataatgatgattcgTTGTATTGTTGTCCGGATTGTGGTGGAATGTTTACATCGAATGAATGGGAGAAACATAAAGAACaacataaaaagaaaatttgcaaTGAATGCggtaaaatattccaatttcaatCCGAATTAGAACAACATCGTAGTGtacatttaaatttgaaagtttATCGTGATTCGAAAACACAATCATATAGAAGTACAATGGCTAGTCCAAATAGTGGCGAtacaaatattgttgtaatgtGTGAAATTTGCGATACAATTTTCCCAACCAAAGAACAATTAAGAGAACATAAATTAACGCACGATACTAAACCGACATTAATACAATTACAACAGAATCATGATGGCGGCGATATCGATGTGAAGAAATTTTCATGTACAATGTGTAATAAAAGTTATGCTGGTTATGGTGGTTTATGGGAACATAATCGTAAGAAACATCCAGAAAATAAATCGCCATTCTCTAAAGATCTACCAAAAGAATGTAAACCGTGTAATAAAGTATTTTTTACTGGTGGTTCATGGTTTATGCATAATCAGATGCATGAACGTACACGTGGTATGGTATTAGGCTTACAACAGAAGCAACATCAGAAAgaatcaacatcatcatcgcCATATTCGCAAATTGAAGAGGATACAGCTGATGATTCGGAATCGTATCATACATGTAAACGTTGTTTTAAAGTATTTTCGAATCGTTACAATTTGAAGAACCATATGAAATGTCATGGTATCAATCCACATCCGACAACAAAAGCGAGTCTCAAGAATAAAGGCAAAAAAGTATGGTGTGATGTTTGTCATTCACCATTTGATAGTAGCCAACAATTACAGCAACATAAATCGGAAGAACATGCCGAAACTGAAGATACAATGCCTAGTTTATCGGATGAACAAGAAGAGATCGATGTTAAAGCACCATTTGTATTTACATGTGATGTTTGTGTACAGACATTCACAACGAAATTATCATTGAAGAAACATAAAGAGAAACATGCCCAAGAACGTGCAATGCTATTAATACCAAATAAACGTAATAcagtttattgtaaatattgtaaaatatcatTTAGTAATTcggaacaattgaattatcataTGCGTCAGCAACATAATGAATCAATTGGACGGGCAgctaaaacaaaagataaaggTAAAAATGCCGTTTGTAACATATGTCAGAAACCATTCCAAAGTTCATCAGCATTATATGCACATTTGGGTTGGCATAAACGTGGTAAAATTTATGAACAATACGTACCAGAACGGAATCCGATTAaagttaaaattaaacaagaaCCACAAGATGATGTACCGACACAATTTAAATGTAATACATGTAAAGCAATTCTACCAAATGATACAGCATTGCAAATTcatatattagaaaaacatCGTGACATAAATGCAATTGTATTACCAGCAAATAGATGTAGTATGTGTAATTTGGATTTTACATCACAAGATGAATATGAACAGCATAAACgtttacataatattgttgaGAATCCACGGAAAACATTTCCATGTAATCATTGTCCAGCTGCTTTTAATCGTATTGAAACATTAAATGCACATTTGAAACAATATCATATTGATCAAATCAAACAAGAATATAATTGTCCACAATGTAATCGtatatttgataaacaaaGTTCATTGACTATACATTTGAAAGTACATGAAAAGCAACGTATGAACGTACCATCTAGACCATTATTTTCATGTTCAATTTGTAATCTAGGCTTTAATTTACCTAAAGACTTACGAGCTCATACTATTAAAGCTCATCCATTTTGA
- Protein Sequence
- GHNLVFDPRQCTICDKLFSSRANRKKHERVVHGINANINGVSVISYDDQSQSSCDSQAISNTTSEPTAEEKKILFAAGLKLLQTNSTPPISLETLSKIELSYIEKCKAMAIMYHSLVCACHSVPHPNLKGLLSHLRSIGIWFPVFTCYHCMITFTDRSSSTRHHLRCTRTNLETLIKLSNLKKRSEVKTRLYQNYKCTKCRFMYSFHEDFCTHVDEEHSDKQFPLTCTCGRLFLNLEDYKDHAYVSCLVEFYCDICHITLKTLDAFQKHAIENHDQSEGFELVRDDGYRQRRERCSLPNVAAVKREHSENNIIYSKRRSTFYKQRFVDSEEEYDGGGGGVSSGSKVINPMILQKIPGKVCPICSREYATNNNMLRHYRTHTFNDKMDNHPQNNDDSLYCCPDCGGMFTSNEWEKHKEQHKKKICNECGKIFQFQSELEQHRSVHLNLKVYRDSKTQSYRSTMASPNSGDTNIVVMCEICDTIFPTKEQLREHKLTHDTKPTLIQLQQNHDGGDIDVKKFSCTMCNKSYAGYGGLWEHNRKKHPENKSPFSKDLPKECKPCNKVFFTGGSWFMHNQMHERTRGMVLGLQQKQHQKESTSSSPYSQIEEDTADDSESYHTCKRCFKVFSNRYNLKNHMKCHGINPHPTTKASLKNKGKKVWCDVCHSPFDSSQQLQQHKSEEHAETEDTMPSLSDEQEEIDVKAPFVFTCDVCVQTFTTKLSLKKHKEKHAQERAMLLIPNKRNTVYCKYCKISFSNSEQLNYHMRQQHNESIGRAAKTKDKGKNAVCNICQKPFQSSSALYAHLGWHKRGKIYEQYVPERNPIKVKIKQEPQDDVPTQFKCNTCKAILPNDTALQIHILEKHRDINAIVLPANRCSMCNLDFTSQDEYEQHKRLHNIVENPRKTFPCNHCPAAFNRIETLNAHLKQYHIDQIKQEYNCPQCNRIFDKQSSLTIHLKVHEKQRMNVPSRPLFSCSICNLGFNLPKDLRAHTIKAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00987314;
- 90% Identity
- -
- 80% Identity
- -