Mvar001451.1
Basic Information
- Insect
- Mylabris variabilis
- Gene Symbol
- -
- Assembly
- GCA_037464815.1
- Location
- JAZBGW010000300.1:1430-8309[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0063 0.38 11.3 1.7 2 23 196 218 196 218 0.95 2 21 2.4 1.5e+02 3.1 2.1 1 21 331 351 331 352 0.92 3 21 0.5 30 5.3 6.2 1 23 381 404 381 404 0.92 4 21 0.16 9.8 6.8 0.1 5 19 414 428 412 431 0.91 5 21 0.0077 0.46 11.0 0.9 1 23 437 460 437 460 0.91 6 21 7.5e-05 0.0045 17.3 0.6 2 23 541 562 540 562 0.97 7 21 0.019 1.1 9.8 0.8 1 23 579 600 579 600 0.94 8 21 2.1e-05 0.0013 19.1 0.3 3 23 605 625 604 625 0.97 9 21 5.4e-05 0.0032 17.8 0.2 2 23 656 677 655 677 0.97 10 21 0.017 1 9.9 0.3 1 23 706 729 706 729 0.97 11 21 1.6 97 3.7 0.4 2 23 743 764 742 764 0.95 12 21 0.00087 0.052 14.0 8.3 1 21 808 828 808 830 0.95 13 21 0.025 1.5 9.4 0.7 3 23 851 872 851 872 0.93 14 21 0.0004 0.024 15.0 2.3 1 23 898 920 898 920 0.98 15 21 7.5e-05 0.0045 17.3 1.0 2 23 935 957 934 957 0.96 16 21 0.00013 0.0075 16.6 0.2 1 23 978 1000 978 1000 0.95 17 21 0.086 5.2 7.7 0.1 1 23 1035 1058 1035 1058 0.95 18 21 0.005 0.3 11.6 2.7 2 23 1070 1091 1069 1091 0.97 19 21 0.00012 0.0072 16.7 0.5 1 23 1101 1124 1101 1124 0.96 20 21 5.9e-06 0.00036 20.8 0.6 1 23 1132 1154 1132 1154 0.98 21 21 0.00098 0.059 13.8 0.1 1 23 1167 1190 1167 1190 0.96
Sequence Information
- Coding Sequence
- ATGGCAGACTTCAGTATGTGCTGTAGACTTTGCCTTAGTGAGAAACTGGACACTATCAAGTCTATATTTGATGATGCTATAGATGATCGGACATTACCACAGAAAATTCTAGCCTCTGTTGCAATTGAAatAACTTCAGAGgacaaattaacaacaatggTTTGCAATCAATGCATCGAAACcgtcaataattattatatgttTAAGAAGCTTTGCTCGGAAAATCAGAAGAAACTCGAAGAATGGTTCAAAATGAATTCTTCAGATACGAATATTCAAATCAAAGACGAACCTATCGATGCTGAACCACCACAATCACCTGATGTTATAATTAGTGGTGAAATACCTGTTAAAACTGAACCAATTGATGATAGCGATGATGGCGGGGTAGCAATAGAAGAAGATGCACCACCACCTCTAACACCACAAGATCAACATAATGTTAATAACgatgatcatgatgatgatgctgtGATGGATATAGAAGTTGTAGAGCAACAGGGTGATAAAAATCAAGTAGAGAAACATCAGGATAAAGAGGACCAACAGAATAATGATGCTTCTATTGTAGAAACAAATCCACGCCAGTGTACAATCTGCGAAAAAGAATTTTGTTCGGTAGCGAATCGTAAGAGACATGAACGTGGCATCCATGGGATTGATCATAGTGCTAGTGCCGATGTTTCAATATCACAAGATGAACAATCGCAGAGTTCAATTGATTCTCAAGTCGTaccgaaaacaacaacagaaccAACAGctgaagaaaagaaaatcctATTCGCTGCTGGTTTAAAACTATTACAAACCAATTCAACTCCGCCAATATCATTGGAGACACTATCAAAACTCGAATTGAGTTATATTGAGAAATGTAAAGCTATGGCTGTAATGTATCGTTCATTAGTGTGCGCTTGCCATAGTGTACCCCATCCAAATTTAAAAGGTCTATTATCACATCTACGTTCGATTGGTATATGGTTTCCAGTATTTACATGTTATCAATGTATGATAACATTCACTGATCGTTCATCAAGTACACGCCATCATTTGCGTTGTACACGTACAAATTTGGAAACATTGGTGAAATTGTCGAATTTAAAGAAACGTAGTGAAGTGAAAACACGTgtatatcaaaattataaatgtacgAAATGTCGGTTTATGTACAGTTTTCATGAAGATTTCTGTCGGCATGTCGATGAAGAACATTCAGATATTACATTTCCAATGACATGTACGTGTGGACGTGTTTTTACAAATCTAGAAGATTATAAAGATCATGCTTATGTTAGTTGTTTAGTTGATTTCTATTGTGATATTTGCCATATTACTGTGAAAACATTGGATGCATTCCAGAAGCATGCTAGTGAGAATCACGATAATTCTGAAGGCTTTGCTTTGGTACAAGAGGATGGTTATCGACGGAGACGTGAACGTTCCTCATTACCGTATGTAACGGCTGTTAAACGTGAACATTCAGAAAACAACATTATTTATGGTAAACGACGTAGTACATTCTATAAACAACGGTTCATCGACAGTGAAGAAGAGTACGCGAGCAGCGGTAGTGGCAGTAAAGTCATCAATCCAATGATTCTACAAAAAATCCCCGGCAAAACATGTCCGATATGTTCAAGAGTTTATGCATCGAATAACAACATGTTACGACACTATCGTAGTCATACAATTGacgataaaaatgataatcaatcaaataaaGATGATTCATTGTACTGTTGTCCGGATTGTGGTGGTATGTTCACATCTGATGAATGGGAGAAACATAAAGAACAACACAAGAAGAAAATCTGTAACGAATGTGGTAAAGTATTCCAATTCCAATCGGAATTGGAACAACACAGAAGCGTTCATTTGAATCTCAAAGTGTACCGTGACTCGAAAACACAATCGTATAGGAGCACAATGGCGAGTCCAAACAATACCGAAACGAATATTGTTGTAATGTGTGAAATTTGCGACACGATATTCCCCACGaaagaacaattaaaagaaCATAAATTAACACATGactcacaacaacaacaacaacaacaaaaacatgaTACCGAAGAAGAGGATACTCGCAGTCAGGGCAGTAGTAATGGCAAGAAATATAAATGTACGCTTTGTAATAAAGGCTATGCTGCTTATGGTGGTTTATGGGAGCATAACCGGAAGAAACATCCTGAAAATAAATCGCCGTACTGTAAGGATTTCCCGAAAGAATGTAAGGCTTGtgacaaattattttatacggGTGGTTCATGGTACATGCATAAAATGATGCACGAGAGGACACGCGATAATGTGTTAAcaatcaaacaacaaaaacaacagaaggcaacaacaacagcatcatcatcatcaccatatTCACAAGTCGATGATGAAGCTGGTGATGATGATACTGAATCGTATCATACATGTAAACGTTGTTTTAAAGTGTTCTCGAATCGTTACAATTTAAAGAATCACATGAAATGTCACGGTATTAATCTACACCCGGTTACAAAGACCAGTTTAAAGGGTAAAGGTAAAAAGGTATGGTGTGATGTTTGTCATGCACCATTCGATAGTAGTCAACAATTACAGCAACATAAATCTGAAGAACATGCAGAAACCGAAGATACAATGCCCAGTTTATCTGATGAACAAGAAGAGATTGATGTTAAAGCACCGTTTGTTGTATTCACATGTGATGTTTGTGTACAAACATTCACaacaaaattatcattaaagaaACATAAAGAGAAACATGCCCAAGAACGCGGCATGTTTATGCAACCAACAAAACATgtctattgtaaatattgcaaaataacATTCACAAATGttaatcaattgaattatCATATGCGACAAGAACATGATGAAACAACAGCACACGGTCGTGTTACTGCAACGAAAATTAAAGACAAATCGAAACATTTCGCTTGTAATATGTGCAAGAAACCGTTCCAAAGTTCATCAGCATTGTACGCACATATGGGCTGGCATAAACGCGGTAAAGTTTATGAACAATACGTACCGGAAACACGGGCACCAATCAAAGTGAAAATCAAACAGGAACCAATGGATACAGCACCAAAAGTACCGCAATTCAGATGTAATACATGCAAAGCTGTATTACCGAACGATACAGCTTTACAAATACATATATTAGAGAAACATCGTGATATTAATGCAATTGTATTACCAACAACTAGATGTAATATGtgtaatttagattttagttCACATGATGAATATGAACAACATAAACGTTTGCATAATATTGTGGAACAACCGAGAAAAACGTTCCCATGTAATCATTGTCCGGCGGCATTCAGTCGTATTGAAACATTAAATGCACATTTGAAACAATATCATCTTGATGAAATTAAACAGGAATACAATTGTCCACAATGTAATCGTATTTTTGATAAACAGAGCTCGTTAACGATACATTTAAAAGTGCATGAAAAGCAGCGTATGAGTGCCCCGTCTAGACCGTTATTTTCATGTTCGATTTGTAATTTAGGTTTTAATTTACCGAAAGATTTACGAGCACACACCATTAAAGCCCATCCATTTTGA
- Protein Sequence
- MADFSMCCRLCLSEKLDTIKSIFDDAIDDRTLPQKILASVAIEITSEDKLTTMVCNQCIETVNNYYMFKKLCSENQKKLEEWFKMNSSDTNIQIKDEPIDAEPPQSPDVIISGEIPVKTEPIDDSDDGGVAIEEDAPPPLTPQDQHNVNNDDHDDDAVMDIEVVEQQGDKNQVEKHQDKEDQQNNDASIVETNPRQCTICEKEFCSVANRKRHERGIHGIDHSASADVSISQDEQSQSSIDSQVVPKTTTEPTAEEKKILFAAGLKLLQTNSTPPISLETLSKLELSYIEKCKAMAVMYRSLVCACHSVPHPNLKGLLSHLRSIGIWFPVFTCYQCMITFTDRSSSTRHHLRCTRTNLETLVKLSNLKKRSEVKTRVYQNYKCTKCRFMYSFHEDFCRHVDEEHSDITFPMTCTCGRVFTNLEDYKDHAYVSCLVDFYCDICHITVKTLDAFQKHASENHDNSEGFALVQEDGYRRRRERSSLPYVTAVKREHSENNIIYGKRRSTFYKQRFIDSEEEYASSGSGSKVINPMILQKIPGKTCPICSRVYASNNNMLRHYRSHTIDDKNDNQSNKDDSLYCCPDCGGMFTSDEWEKHKEQHKKKICNECGKVFQFQSELEQHRSVHLNLKVYRDSKTQSYRSTMASPNNTETNIVVMCEICDTIFPTKEQLKEHKLTHDSQQQQQQQKHDTEEEDTRSQGSSNGKKYKCTLCNKGYAAYGGLWEHNRKKHPENKSPYCKDFPKECKACDKLFYTGGSWYMHKMMHERTRDNVLTIKQQKQQKATTTASSSSPYSQVDDEAGDDDTESYHTCKRCFKVFSNRYNLKNHMKCHGINLHPVTKTSLKGKGKKVWCDVCHAPFDSSQQLQQHKSEEHAETEDTMPSLSDEQEEIDVKAPFVVFTCDVCVQTFTTKLSLKKHKEKHAQERGMFMQPTKHVYCKYCKITFTNVNQLNYHMRQEHDETTAHGRVTATKIKDKSKHFACNMCKKPFQSSSALYAHMGWHKRGKVYEQYVPETRAPIKVKIKQEPMDTAPKVPQFRCNTCKAVLPNDTALQIHILEKHRDINAIVLPTTRCNMCNLDFSSHDEYEQHKRLHNIVEQPRKTFPCNHCPAAFSRIETLNAHLKQYHLDEIKQEYNCPQCNRIFDKQSSLTIHLKVHEKQRMSAPSRPLFSCSICNLGFNLPKDLRAHTIKAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00987314;
- 90% Identity
- -
- 80% Identity
- -