Basic Information

Insect: Hycleus cichorii
Gene Symbol: -
Assembly: GCA_013841215.1
Location: JACDRQ010000355.1:19547-24638[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.0028 0.19 11.8 2.0 2 23 195 217 195 217 0.95

2 21 1.6 1.1e+02 3.1 2.1 1 21 326 346 326 347 0.92

3 21 0.49 33 4.7 6.4 1 23 376 399 376 399 0.92

4 21 0.56 38 4.6 0.1 5 19 409 423 407 426 0.91

5 21 0.0091 0.62 10.2 0.9 1 23 432 455 432 455 0.91

6 21 0.00022 0.015 15.3 0.3 3 23 537 557 536 557 0.98

7 21 0.019 1.3 9.2 0.8 1 23 574 595 574 595 0.93

8 21 9.5e-06 0.00065 19.6 0.4 2 23 599 620 598 620 0.96

9 21 3.5e-05 0.0024 17.8 0.2 2 23 651 672 650 672 0.97

10 21 0.011 0.76 9.9 0.3 1 23 703 726 703 726 0.97

11 21 1 71 3.7 0.4 2 23 740 761 739 761 0.95

12 21 6.4e-06 0.00044 20.1 6.5 1 23 807 829 807 829 0.98

13 21 0.0072 0.49 10.5 1.2 3 23 850 871 850 871 0.93

14 21 0.00042 0.029 14.4 1.6 1 23 897 919 897 919 0.98

15 21 6.8e-05 0.0046 16.9 1.9 1 23 933 956 933 956 0.97

16 21 0.00013 0.0089 16.0 0.3 1 23 976 998 976 998 0.94

17 21 0.058 3.9 7.7 0.1 1 23 1033 1056 1033 1056 0.95

18 21 0.0032 0.22 11.6 2.7 2 23 1068 1089 1067 1089 0.97

19 21 7.8e-05 0.0053 16.7 0.5 1 23 1099 1122 1099 1122 0.96

20 21 1.3e-06 9.1e-05 22.2 0.6 1 23 1130 1152 1130 1152 0.98

21 21 0.00063 0.043 13.8 0.1 1 23 1165 1188 1165 1188 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.0028	0.19	11.8	2.0	2	23	195	217	195	217	0.95
2	21	1.6	1.1e+02	3.1	2.1	1	21	326	346	326	347	0.92
3	21	0.49	33	4.7	6.4	1	23	376	399	376	399	0.92
4	21	0.56	38	4.6	0.1	5	19	409	423	407	426	0.91
5	21	0.0091	0.62	10.2	0.9	1	23	432	455	432	455	0.91
6	21	0.00022	0.015	15.3	0.3	3	23	537	557	536	557	0.98
7	21	0.019	1.3	9.2	0.8	1	23	574	595	574	595	0.93
8	21	9.5e-06	0.00065	19.6	0.4	2	23	599	620	598	620	0.96
9	21	3.5e-05	0.0024	17.8	0.2	2	23	651	672	650	672	0.97
10	21	0.011	0.76	9.9	0.3	1	23	703	726	703	726	0.97
11	21	1	71	3.7	0.4	2	23	740	761	739	761	0.95
12	21	6.4e-06	0.00044	20.1	6.5	1	23	807	829	807	829	0.98
13	21	0.0072	0.49	10.5	1.2	3	23	850	871	850	871	0.93
14	21	0.00042	0.029	14.4	1.6	1	23	897	919	897	919	0.98
15	21	6.8e-05	0.0046	16.9	1.9	1	23	933	956	933	956	0.97
16	21	0.00013	0.0089	16.0	0.3	1	23	976	998	976	998	0.94
17	21	0.058	3.9	7.7	0.1	1	23	1033	1056	1033	1056	0.95
18	21	0.0032	0.22	11.6	2.7	2	23	1068	1089	1067	1089	0.97
19	21	7.8e-05	0.0053	16.7	0.5	1	23	1099	1122	1099	1122	0.96
20	21	1.3e-06	9.1e-05	22.2	0.6	1	23	1130	1152	1130	1152	0.98
21	21	0.00063	0.043	13.8	0.1	1	23	1165	1188	1165	1188	0.96

Sequence Information

Coding Sequence: ATGGCAGACTTCAGTACGTGCTGTAGACTTTGCCTTAGTGAGAAACTGGACACTATCAAGTCTATATTTGATGATGCTATAGATGATCGGACATTACAACAGAAAATTCTAGCCTCTGTTGCAATTGAAATAACATCTGGGGATAAATTGACAACAATGGTTTGCAATCAATGCATTGAAACTGTTGATAATTTTTATAATTTTAAGAAGTCGTGCTCTGAAAACCAGAAAAAACTCGAAGAATGGCTCAAATTGAATTCTTCAGATACGAATATTCAAATCAAAGAAGAATCTATCGATACAGAACCACCACAATCGCCTGATGTTGTAATTAATGGTGAAATTCGTGCTGTTAAAATTGAACCAATTGATGATAGTGACGATGGTGGAGAACTAGTAGAAGAAGATGCACCACCTCCTTTAACACCACATGATCAACATAATGATAATAATGATGATAATGATGATGCGATGGATATAGAAGTTGTAGAGCCACAGAATGATAAGATTCAAGAAGATAAACATCAAGATAAAGAAAATCAGCAGAATAATGATGGACCGAATGTAGAGATAAATCCACGTAGATGTACAATTTGCGATAAAGACTTTTGTTCGGTTGCGAATCGTAAGAGGCATGAACGTGGAATCCATGGAATTGGAGTTACTACTAATGCTGAAGCTTCACCGTCTCAAGATGATCAGTCGCAGAGTTCATTGGATTCTCAACCGGTAGAAGAACCAACAGCTGAAGAAAAGAAAATCCTATTTGCTGCTGGTTTAAAACTCTTACAAACGAATTCAACACCGCCAATATCATTGGAGACACTGTCAAAACTCGAATTAAGTTATATTGAAAAATGCAAAGCTATGGCTATAATGTATCGTTCATTAGTATGTGCTTGCCATAATGTACCCCATCCAAATTTGAAAGGTTTATTATCGCATTTACGTTCGATCGGTATCTGGTTTCCTGTATTTACATGTTATCAATGCATGATAACATTCACTGATCGTTCATCAAGTACACGCCATCATTTACGTTGCACACGTACGAATTTGGAAACGTTGGTGAAATTGTCAAATTTGAAGAAGCGCAGCGAAGTGAAAACACGCCTATATCAGAATTATAAATGTACGAAATGTCGTTTCATGTACAGTTTCCATGAAGATTTTTGTAAACACGTCGATGAAGAACATTCTGATATAACATTTCCAATGACCTGCACATGTGAACGGACATTTACAAATTTAGAAGATTATAAAGACCATGCTTATATTAGTTGTTTAGTTGATTTCTATTGTGATGTTTGTCATATCACTGTAAAAACATTGGATGCATTCCAGAAGCATGCTAGTGAGAATCACGATAATTCCGAAGGTTTTGCTTTGGTCCAGAAGGATGGTTATCGACAAAGACGCGAACGTAGCTCATTACCAAATGCGATTTCTGTTAAACGTGAACATTCAGAAAACAACATTATCTACGGTAAACGCCGTAGTACATTCTATAAACGGTTTGCCGACAGTGAAGAAGAGTACGCGAGTAGCGTAGGCAGCGGTAGTAAAGTCATCAATCCAATGGTTGTGCAAAAAATCCCCGGCAAAATATGTCCGATATGTTCAAGGGAATACGTATCGAATAACAACATGTTGCGACACTATCGCAGCCATGAATTCGATGTTACAAATGATTCACAACAGAACAAAGATGATTCATTGTATTGTTGTCCGGATTGCGGTGGTATGTTTACATCGGAAGAATGGGAGAAACATAAGGAACAACACAAAAAGAAAGTCTGCAATGAATGTGGTAAAGTATTCCAATTCCAATCAGAATTGGAACAACATAGAAGCGTACATTTGAATCTTAAAGTTTATCGCGACTCGAAAACACAATCGTATCGAAGTACAATGGCAAGTCCGAATAATACCGACACGAATATTGTTGTAATGTGTGAAATTTGCGACACCATATTTCCGACAAAAGAACAATTAAAGGAACATAAATTGACACATGACTTGCCACCACAACAACGACAACAACAGCAGCAACAACACGATACAGAAGAAGAGGATAATCATAGCCTTGCTAGTAATGGTAAGAAATATAAATGTACACTTTGTAATAAAGGTTATGCTGCTTATGGTGGTTTATGGGAGCATAATCGGAAGAAACACCCGGAGAATAAATCGCCGTATTGTAAAGATTTCCCGAAAGAATGTAAGGCTTGTGATAAACTGTTTTACACTGGTGGTTCATGGTATATGCATAAAATGATGCACGAAAGGACACGCGATAATGTATTGGCAATCAAGCAACAGAAACAACAACAACAACAACAGAAAGCAATCGCATCGTCTTCATCGCAATATTCTCAAGTCGATGACGAAGCTGCCGATGATGATAGTGAATCGTATCATACATGTAAACGTTGTTTTAAAGTCTTTTCGAATCGTTATAATCTAAAGAATCACATGAAATCGCACGGTATTAATCTACACCCAGTTACAAAGACGAGTTTGAAGAGTAAAGGTAAAAAAGTATGGTGTGATGTTTGTCATACACCATTCGATAGTAGCCAACAATTACAACAACATAAATCCGAAGAACATGCAGAAACTGAAGACACAATGCCTAGTTTATCCGACGAACAAGAAGAAGTGGAAGTTAAAGCCCCGTTTGTTGTATTCACTTGTGATGTATGCGTACAAACATTCACAACGAAATTAGGATTGAAGAAACACAAAGAGAAACATGCACAAGAACGCGGTTTATTTATGCAACCAACAAAACGTTTCTATTGTAAATATTGTAAAATATCATTCATCAATTCGAATGAAATGAACTACCATATGCGCAATGAACATGATGAAACAGCCCAAGGACGGGCTAATGCAACCCGAATTAAAGAGAGGGCCAGGCATTTCGTTTGTAAAATGTGCAAGAAACCGTTCCAGAGTTCATCGGCATTGTATGCACATTTGGGCTGGCATAAACGCGGTAAAGTTTACGAACAATACGTGCCGGAAACGCGGACACCAATTAAAGTGAAAATCAAACAAGAACCGATCGATGAAATACCGGCGGTAGCGCAATTTAAATGCAGTACATGCAAAGCTGTATTGCCGAATGATACAGCGTTACAGATACATATTTTAGAGAAACATCGCGATATTAACGCGATTGTACTACCAACAACTAGATGTAATATGTGTAATTTGGATTTCAGTTCGCATGATGAATACGAACAACATAAACGTCTGCATAATATTGTGGAACAACCGAGGAAAACGTTTCCATGTAATCATTGTCCGGCTGCTTTCAGTCGTATTGAAACGTTGAATGCACATTTGAAACAATATCATTTAGATGACATTAAACAGGAATATAATTGTCCGCAATGCAATCGTGTTTTTGATAAACAAAGCTCGTTAACGATACATTTGAAAGTGCACGAGAAACAGCGTATGAATGCCCCGTCTAGGCCGTTATTCTCATGTTCGATTTGTAATTTAGGCTTTAATCTACCGAAAGATTTACGAGCACACACCATTAAAGCTCACCCATTTTGA
Protein Sequence: MADFSTCCRLCLSEKLDTIKSIFDDAIDDRTLQQKILASVAIEITSGDKLTTMVCNQCIETVDNFYNFKKSCSENQKKLEEWLKLNSSDTNIQIKEESIDTEPPQSPDVVINGEIRAVKIEPIDDSDDGGELVEEDAPPPLTPHDQHNDNNDDNDDAMDIEVVEPQNDKIQEDKHQDKENQQNNDGPNVEINPRRCTICDKDFCSVANRKRHERGIHGIGVTTNAEASPSQDDQSQSSLDSQPVEEPTAEEKKILFAAGLKLLQTNSTPPISLETLSKLELSYIEKCKAMAIMYRSLVCACHNVPHPNLKGLLSHLRSIGIWFPVFTCYQCMITFTDRSSSTRHHLRCTRTNLETLVKLSNLKKRSEVKTRLYQNYKCTKCRFMYSFHEDFCKHVDEEHSDITFPMTCTCERTFTNLEDYKDHAYISCLVDFYCDVCHITVKTLDAFQKHASENHDNSEGFALVQKDGYRQRRERSSLPNAISVKREHSENNIIYGKRRSTFYKRFADSEEEYASSVGSGSKVINPMVVQKIPGKICPICSREYVSNNNMLRHYRSHEFDVTNDSQQNKDDSLYCCPDCGGMFTSEEWEKHKEQHKKKVCNECGKVFQFQSELEQHRSVHLNLKVYRDSKTQSYRSTMASPNNTDTNIVVMCEICDTIFPTKEQLKEHKLTHDLPPQQRQQQQQQHDTEEEDNHSLASNGKKYKCTLCNKGYAAYGGLWEHNRKKHPENKSPYCKDFPKECKACDKLFYTGGSWYMHKMMHERTRDNVLAIKQQKQQQQQQKAIASSSSQYSQVDDEAADDDSESYHTCKRCFKVFSNRYNLKNHMKSHGINLHPVTKTSLKSKGKKVWCDVCHTPFDSSQQLQQHKSEEHAETEDTMPSLSDEQEEVEVKAPFVVFTCDVCVQTFTTKLGLKKHKEKHAQERGLFMQPTKRFYCKYCKISFINSNEMNYHMRNEHDETAQGRANATRIKERARHFVCKMCKKPFQSSSALYAHLGWHKRGKVYEQYVPETRTPIKVKIKQEPIDEIPAVAQFKCSTCKAVLPNDTALQIHILEKHRDINAIVLPTTRCNMCNLDFSSHDEYEQHKRLHNIVEQPRKTFPCNHCPAAFSRIETLNAHLKQYHLDDIKQEYNCPQCNRVFDKQSSLTIHLKVHEKQRMNAPSRPLFSCSICNLGFNLPKDLRAHTIKAHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00987314;
90% Identity: iTF_00814561;
80% Identity: -