Ltri000444.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- -
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010000028.1:145528-151758[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00029 0.016 15.3 1.2 2 23 185 207 185 207 0.97 2 21 1.8 99 3.4 3.5 1 21 319 339 319 340 0.92 3 21 1.2 70 3.9 6.0 1 23 369 392 369 392 0.92 4 21 1 56 4.2 0.1 5 19 402 416 400 419 0.91 5 21 0.0054 0.31 11.3 1.3 1 23 425 448 425 448 0.91 6 21 0.0002 0.011 15.8 0.4 2 23 540 561 539 561 0.97 7 21 0.08 4.5 7.6 1.1 1 23 578 599 578 599 0.84 8 21 1.3e-05 0.0007 19.6 0.3 3 23 604 624 603 624 0.97 9 21 4.7e-05 0.0026 17.8 0.2 2 23 656 677 655 677 0.97 10 21 0.0023 0.13 12.4 0.3 1 23 706 729 706 729 0.97 11 21 0.13 7.3 7.0 0.5 2 23 743 764 742 764 0.95 12 21 0.00076 0.043 14.0 8.3 1 21 806 826 806 828 0.95 13 21 0.4 23 5.4 0.8 3 23 849 870 849 870 0.93 14 21 0.00054 0.03 14.4 2.2 1 23 895 917 895 917 0.98 15 21 3.7e-05 0.0021 18.1 0.9 2 23 935 957 934 957 0.96 16 21 9.2e-05 0.0052 16.9 0.1 1 23 978 1000 978 1000 0.94 17 21 0.066 3.7 7.9 0.1 1 23 1032 1055 1032 1055 0.95 18 21 0.0048 0.27 11.4 2.8 2 23 1067 1088 1066 1088 0.97 19 21 0.00011 0.0059 16.7 0.5 1 23 1098 1121 1098 1121 0.96 20 21 5.2e-06 0.00029 20.8 0.6 1 23 1129 1151 1129 1151 0.98 21 21 0.0013 0.073 13.2 0.2 1 23 1164 1187 1164 1187 0.96
Sequence Information
- Coding Sequence
- ATGGCAGATTTCAGTACGTGCTGTAGACTTTGCCTTAATGAGAAACTGGACACTATCAAATCTATATTTGATGATGCTATAGATGATCGAACATTACCACAGAAGATTTTAGCCTCTGTTGCAATTGAAgtGACATCAGAGGACAAATTGACAACAAAGATCTGTACGCAATGTATTGAAAAtgtcaacaattattacactTTCAAGAAATCGTGTTcggaaaatcaaaaaaaattagaagaatgGTTAAAACTGAATTCTTCCGAAACGaatattcaaattaaagaaGAACCAATTGATCCGGAACGACCACAATCACCTGACGTTATAATTAACGGTGAAATACCTGTAGTTAAAACAGAaccaattgatgatgatgatgatgatgatctaccaccaccaacattaaCACCacatgatcatgatgatgatgatgatgatgatgataacaatagtGAAGATATGGATATTGAAGTTGTAGAACAGCAAAATCATCAAGTGGGCGAGCAAGATCAACAAAATGATGCTCTTAATTCGGAGCCAGAGCCGCGCCGATGTacaatttgtgataaattgtTTAGTTCGCGTGCAAATCGTAAGAAACATGAACGCGTCATCCATGGTGTTAATCATAATGCTAATGCAGATGCATCTCTATCTCAAGATGATCATTCACAAAGTTCATCTGATTCACAAGCTTTGTCAAAACCAACAGAACCAACAGctgaagaaaagaaaatccTATTTGCAGCtggtttgaaattattacaaagaaaTTCAACACCACCAATATCATTAGAgacattatcaaaaattgaattcagttatatagaaaaatgtaAAGCAATGGCTGTAATGCATCGTACATTAATATGTGCATGTCATAGTGTACCACATCCAAATTTAAAAGGTTTATTATCACATTTACGTTCAATTGGTATATGGTTTCCAGTATTTACATGTTATCATTGTATGATAACATTTACTGATCGTTCATCAAGTACACGACATCATTTACGTTGTCAACGTACAAATTTGGAAACATTggtgaaattatcaaatttgaaaaaacgtAGTGAAGTTAAAACacgtttatatcaaaattataaatgtacAAAATGTCGTTTTATGTATAGTTTTCATGAAGATTTTTGTACACATGTTGATGAGGAACATTCAGATATTACATTTCCAATGACATGTACATGTGAAAGggtatttacaaatttagaaGATTATAAAGATCATGCTTATATTGGTTGTTTAGTTGAATTCTATTGTGATATTTGTCATACAACTGTAAAAACATTGGATGCATTCCAAAAGCATGCTAGTGAAAATCATGATAATTCTGATGGTTTTCCATTAGTACAAGATGATGGTTATAGACAAAGACGTGAACGTTGTTCATTACCAAATGTAGCTGCTGTTAAACGTGAACATTctgaaaataatattatttacgGGAAACGTCGCAgtacattttataaacaacgTTTTATTGATAGTGAAGAAGAATATgctagtagtggtggtggtggtggtggtggtggcggtggcgTTGGTAGTGGTAATAAAGTAATCAATccgatatttttacaaaaaatcccGGGTAAAGTTTGTCCAATATGTTCAAGAGAATAtgcatcaaataataatatgttaCGACATTATCGTAGTCATGCATTCGAtgataaaactgataatatacaaaataaagatgattCAATGTATTGTTGTCCGGATTGTGGTGGTATGTTTACATCAAATGAATGGGAACAACATAAAGAACAACATCAAaggaaaatttgtaatgattgtGGTAAagtatttcaatttcaatctGAATTAGAACAACATAGAAGTGTACATTTGAATCTTAAAGTTTATCGTGATTCAAAAACACAATCATATAGAAGTACAATGGCAAGTCCTAATAGTATTGGTgatacaaatattgttgtaatgtgTGAAATTTGCGATACAATCTTTCcaacaaaagaacaattaaaagaacatAAATTAACACATGaatcaccacaacaacaacaacaacaacaacaacaacatgatactgaagatgatgatgaaacaactcaacataatacaaaaaaatataaatgtacGATTTGTAATAAAGGTTATGCTGGTTATGGTGGTTTATGGGAGCATAATCGCAAGAAACATCCAGAAAATAAATCACCATTTTGTAAAGATTTCCCAAAAGAATGTAAAGTTTGTGATAAACTTTTCTATACTGGTGGTTCATGGTATATGCATAAACAAATGCATGAAAGAACACGTGATAGcgtattaaatattaaacaacaacaacaacaacaacataaagaaTCAAGTTCATCATCACCACATTcacaaattgatgatgaacCAGTTGATGATGCTGAATCATATCATACATGTAAACGTTGTTTTAAAGTATTTTCGAATcgttacaatttaaaaaatcatatgAAATGTCATGGTATTAATATGCATCCAGTTACGAAAACCAGTTTGAAAAGTAAAGGTAAAAAAGTATGGTGTGATGTTTGTCATTCGCCATTTGATGGTAgccaacaattacaacaacataaatcTGAAGAACATGCAGAAACTGAAGATACAATGCCAAGTTTATCTGATGAACAAGAGGAGATTGATGTTAAAGCACCATTTATCTTCACATGTGATGTTTGTGTACAAACATTCACAACACGATTATCATTAAAGAAACATAAAGAGAAACATGCACAAGAACGTGTTGGTATGTTTATGCATCCAACAAAACGTAATAcagtttattgtaaatattgtaaagttTCATTTACTAATGCAGaacaattcaattatcatATGCGTCAAGAACATAATGAGATTACAAATGTTGGTCGTGTGACGGCTGTAAAACTTAAAGATAAAGCgaaaaatttcgtttgtaatatttgtaagaaACCATTTCAAAGTTCATCAGCATTATATGCACATTTAGGTTGGCATAAACGTGGTAAAATTTATGAACAATATGTACCGGAAACACGTAATCCAATTAAAGttaaaatcaaacaagaaCCAAAAGATGATTTACCATTATTCAAATGTACTACATGTAAAGCTGTATTACCAAATGATACAGCCTTACAAATACatatattagaaaaacatcGTGATATTAATGCAATTGTATTACCAACAACTAGATGTAATATGTGTAATTTAGATTTTACATCGCATGATGAATATGAACAACATAAACGATtacataatattgttgaacatCCAAGGAAAACATTTCCATGTAATCATTGTCCGGCAGCATTCAGTCGTATAGAAACATTAAATgcacatttaaaacaatatcatttggatcaaattaaacaagaatATAATTGTCCACAATGCAATcgtatatttgataaacaaagtTCGTTAACTATACATTTGAAAGTGCATGAAAAACAACGGATGAATGCACCATCTAGACCGTTATTTTCATgttcaatttgtaatttggGCTTTAATTTACCGAAGGATCTACGTTCTCATACAATTAAAGCTCATCCATTTTGA
- Protein Sequence
- MADFSTCCRLCLNEKLDTIKSIFDDAIDDRTLPQKILASVAIEVTSEDKLTTKICTQCIENVNNYYTFKKSCSENQKKLEEWLKLNSSETNIQIKEEPIDPERPQSPDVIINGEIPVVKTEPIDDDDDDDLPPPTLTPHDHDDDDDDDDNNSEDMDIEVVEQQNHQVGEQDQQNDALNSEPEPRRCTICDKLFSSRANRKKHERVIHGVNHNANADASLSQDDHSQSSSDSQALSKPTEPTAEEKKILFAAGLKLLQRNSTPPISLETLSKIEFSYIEKCKAMAVMHRTLICACHSVPHPNLKGLLSHLRSIGIWFPVFTCYHCMITFTDRSSSTRHHLRCQRTNLETLVKLSNLKKRSEVKTRLYQNYKCTKCRFMYSFHEDFCTHVDEEHSDITFPMTCTCERVFTNLEDYKDHAYIGCLVEFYCDICHTTVKTLDAFQKHASENHDNSDGFPLVQDDGYRQRRERCSLPNVAAVKREHSENNIIYGKRRSTFYKQRFIDSEEEYASSGGGGGGGGGGVGSGNKVINPIFLQKIPGKVCPICSREYASNNNMLRHYRSHAFDDKTDNIQNKDDSMYCCPDCGGMFTSNEWEQHKEQHQRKICNDCGKVFQFQSELEQHRSVHLNLKVYRDSKTQSYRSTMASPNSIGDTNIVVMCEICDTIFPTKEQLKEHKLTHESPQQQQQQQQQHDTEDDDETTQHNTKKYKCTICNKGYAGYGGLWEHNRKKHPENKSPFCKDFPKECKVCDKLFYTGGSWYMHKQMHERTRDSVLNIKQQQQQQHKESSSSSPHSQIDDEPVDDAESYHTCKRCFKVFSNRYNLKNHMKCHGINMHPVTKTSLKSKGKKVWCDVCHSPFDGSQQLQQHKSEEHAETEDTMPSLSDEQEEIDVKAPFIFTCDVCVQTFTTRLSLKKHKEKHAQERVGMFMHPTKRNTVYCKYCKVSFTNAEQFNYHMRQEHNEITNVGRVTAVKLKDKAKNFVCNICKKPFQSSSALYAHLGWHKRGKIYEQYVPETRNPIKVKIKQEPKDDLPLFKCTTCKAVLPNDTALQIHILEKHRDINAIVLPTTRCNMCNLDFTSHDEYEQHKRLHNIVEHPRKTFPCNHCPAAFSRIETLNAHLKQYHLDQIKQEYNCPQCNRIFDKQSSLTIHLKVHEKQRMNAPSRPLFSCSICNLGFNLPKDLRSHTIKAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00987314;
- 90% Identity
- -
- 80% Identity
- -