Scau010384.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- -
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010002246.1:193-5270[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00027 0.016 15.3 1.2 2 23 167 189 167 189 0.97 2 20 1.7 98 3.4 3.5 1 21 301 321 301 322 0.92 3 20 0.44 26 5.2 0.1 5 19 384 398 382 401 0.91 4 20 0.025 1.5 9.2 0.5 1 23 407 430 407 430 0.91 5 20 8.3e-05 0.0049 17.0 0.4 3 23 511 531 510 531 0.98 6 20 0.15 8.6 6.7 1.4 1 23 549 570 549 570 0.85 7 20 4.9e-05 0.0029 17.7 0.3 3 23 575 595 574 595 0.97 8 20 0.00034 0.02 15.0 0.2 2 23 626 647 625 647 0.96 9 20 0.001 0.06 13.5 0.2 1 23 680 703 680 703 0.97 10 20 9.2 5.5e+02 1.1 0.6 2 23 717 738 716 738 0.93 11 20 0.00071 0.042 14.0 8.3 1 21 786 806 786 808 0.95 12 20 0.0091 0.54 10.5 1.2 3 23 829 850 829 850 0.93 13 20 0.00033 0.02 15.1 2.3 1 23 875 897 875 897 0.98 14 20 5.9e-05 0.0035 17.4 1.2 2 23 914 936 913 936 0.96 15 20 0.0004 0.024 14.8 0.1 2 23 953 974 952 974 0.93 16 20 0.049 2.9 8.2 0.1 1 23 1005 1028 1005 1028 0.95 17 20 0.00052 0.031 14.4 1.2 2 23 1040 1061 1039 1061 0.97 18 20 0.00016 0.0093 16.1 0.5 1 23 1071 1094 1071 1094 0.96 19 20 1.6e-06 9.6e-05 22.3 0.9 1 23 1102 1124 1102 1124 0.98 20 20 0.0008 0.047 13.9 0.1 1 23 1137 1160 1137 1160 0.96
Sequence Information
- Coding Sequence
- ATGGCAAATTTCAGTACGTGCTGTAGACTTTGCCTTACCGAGAAACTGGACACTATTAAGTCTATATTTGATGATGCTATAGATGATCGGACATTGCCACAGAAAATTTTAGCCTCTATTTCAATTGAAGTAAACTCAGAGGATAAATTGACTACAATGATTTGCAATCAATGCATAGAAAATGTTAACAATTACTATACGTTCAAAAAGTCATGTGctgaaaatcaaaagaaacTAGAAGAATGGTTCAAAGCGAGCTCGGATGTGaatattcaaatcaaaGAAGAACCAATGGATGCGGAAGCATATCCATCACCCGATGTCATAATCAATGATGAAACGCCATCTATTAAAAACgaatcaattgatgatgaagattTACCACCGCCCTTAACACCACAAGACACGAATGATGATATGGaacttgaaattatttccTTAGAACAATCACCACACGATAATCAAAATGATGCTCCTAATTTGGAGCTTGATCCTCGTCGATGTACAATTTGTGATAAACTGTTTAGTTCGCGAGCAAATCGTAAGAAACACGAACGCGTTGTCCATGGGCTCAATCCCAATATTAATGGAGATGCTTCATTATCGCAAGATGAACAATCGCAAAGCTCGTGTGATTCTCAAGCTGTAACAAAAACAGCCGAACCAACAGCTGaagaaaagaaaattctatttgCAGCtggtttgaaattattacaaacaaattcaacaccACCAATATCATTAGAAAcgttatcgaaaattgaattgagttATATAGAAAAATGTAAAGCAATGGCTATAATGTACCACTCATTGGTATGTGCCTGTCATAGTGTACCACATCCAAATTTGAAAGGTCTATTATCACATCTACGTTCAATTGGTATATGGTTTCCTGTATTCACGTGTTATCATTGTATGATAACATTCACAGATCGTTCATCTAGTACCAGACATCATTTACGTTGTACACGTACAAATCTGGAAACATTGatcaaattgtcaaatttgagAAAACGTAGCGAAGTTAAAACACGTTTATaccaaatttataaatgtacAAAATGTCGTTTTATGTATTGTTTTCATGAAGATTTCTGTACACATGTCGATGAAGAACATTCGGATATATCATTTCCAATGACTTGTACATGCGGTCGAGGTTTCACAAATTTGGAAGATTATAAAGATCATGCTTATGTTAGTTGTTTGGTGGAGTTTTATTGTGATATTTGTCATATTACTGTAAAAACAATGGACGCATTCCAACAACATGCCATTGAAAACCATGACAATTCTGAAGGTTTCGAATTGGTCCGTGATGATGGTTATAAACAAAGACGTGAACGTTGTTCTTTACCGAACGTAGCTGCTGTTAAACGTGAacataatgaaaataatattatttacgGTAAACGTCGCAGTACTTTCTATAAACAACGTCTCGTTGATAGTGAAGAAGACAATGGCAGTAATAGCGGAAGTAAAGTAATTAATCCGATGTTTTTACAGAAAATCCCCGGTAAAATATGTCCGATTTGTTCGAGAGAATATGCTACAAATAATAACATGTTACGACATTATCGTACACATGCCTTCGATGATAAGAACGATgatcatttagaaaataaagatGACTCATTGTATTGTTGTCCGGATTGTGGTGGAATGTTCACAACAACTGAATGGGAGAAACACAAAGAACAACACAAGAAGAAAATATGCAATGAATGCGgtaaaatattccaatttcaatCGGAATTAGAACAACATCGTAGTGTGcatttaaatttgaaagtttatCGTGACTCAAAAACTCAATCATATAGAAGCACAATGGCCAGTCCAAATAGTAGCGATACTAATATTGTTGTGATGTGTGAAATTTGCGATTCAATTTTCCCAACGAAAGAACAACTAAAAGAACATAAATTAACGCACGATACTAAACCACAATCACAGCAAATACAAcaagtacaacaacaacaacaacaacaacatgataGTGATGTCGATGAGCATCATGGAGCGAGAAAATATGTTTGTACCATTTGCAATAAAAGTTATGCTGGTTATGGTGGTTTATGGGAGCATAATCGTAAAAAGCATCCAGAAAATAAGTCGCCGTATTGTAAAGATTTCCCGAAAGAATGTAAACCGTGTAATAAACTTTTCTATACTGGTGGTTCATGGTATATGCATAAACAAATGCATGAACGTAGCCGTGGTAACTTGTTGAATATCAAgaaacaacagcaacaacaacaacaaccgaaaCTACTAGAGAAAGAATCTGGCTCATCATCACCAAATTCTCAAATCGAGGAGGATCAAGCTGATGATTCTGAATCATATCATACATGTAAACGTTGCTTTAAAGTATTTTCGAATCGTTATAATTTGAAGAATCACATGAAATGTCATGGTATCAATCCACATACTGCAACAAAAGCGAATCTAAAAAATAAAGGTAAAAAAGTATGGTGTGATGTTTGTCATACACCGTTTGATAGTAGccaacaattacaacagcATAAATCGGAGGAACATGCCGAAACTGAAGATACAATGCCGAGTTTATCTGATGAACAAGAAGAAATTGATGTTAAAGCACCATTTGTATTCACATGTGATGTTTGTGTCCAAACATTCACGACGAAATTATCGTTAAAGAAACACAAAGAGAAACATGCACAAGAACGTGTGATGTTGTTAAATCCAAATAAACGTAATACCGTTTATTGTAAATTCTGTAAAATATCGTTCACTAATTCGGAACAATTGAGTTATCATATGCGTCAAGAACATGAAACTGTAGGCCGTATGGCTAaagcaaaagaaaaaaacaaaaattcagtGTGCAATATTTGCAAGAAACCATTCCAAAGTTCATCAGCATTATATGCACATTTGGGCTGGCATAAACGTGGTAAAATTTATGAACAATATGTGCCAGAACGTAATCCAATTAAagttaaaataaaacaagagCCAAAAGATGATTTACCACAATTTAAATGTAACACTTGTAAAGCTGTATTACCAAATGATACAGCACTACAAATTCATATACTGGAAAAACATCGCGATATAAATGCGATTGTATTACCATCAACTAGATGTAATATGTGTAATTTGGATTTTACATCGCAAGATGAATACGAACAACATAAACGTTTACATAGTATGGTTGAAAATCCAAGAAAAACATTCCCATGTAATCATTGTCCGGCTGCATTTAGTCGTATTGAAACATTAAATGTACATCTGAAACAATATCATCTTGGTCAAATCAAACAAGAATATAATTGTCCGCAGTGTAATCGCACCTTCGATAAACAAAGCTCATTGACCATACATTTGAAAGTGCACGAAAAACAACGTATGAATGCACCATCACGACCATTATTTTCATGTTCAATATGTAATTTAGGTTTCAATTTACCGAAAGATTTACGAGCTCACACTATTAAAGCTCATCCGTTTTGA
- Protein Sequence
- MANFSTCCRLCLTEKLDTIKSIFDDAIDDRTLPQKILASISIEVNSEDKLTTMICNQCIENVNNYYTFKKSCAENQKKLEEWFKASSDVNIQIKEEPMDAEAYPSPDVIINDETPSIKNESIDDEDLPPPLTPQDTNDDMELEIISLEQSPHDNQNDAPNLELDPRRCTICDKLFSSRANRKKHERVVHGLNPNINGDASLSQDEQSQSSCDSQAVTKTAEPTAEEKKILFAAGLKLLQTNSTPPISLETLSKIELSYIEKCKAMAIMYHSLVCACHSVPHPNLKGLLSHLRSIGIWFPVFTCYHCMITFTDRSSSTRHHLRCTRTNLETLIKLSNLRKRSEVKTRLYQIYKCTKCRFMYCFHEDFCTHVDEEHSDISFPMTCTCGRGFTNLEDYKDHAYVSCLVEFYCDICHITVKTMDAFQQHAIENHDNSEGFELVRDDGYKQRRERCSLPNVAAVKREHNENNIIYGKRRSTFYKQRLVDSEEDNGSNSGSKVINPMFLQKIPGKICPICSREYATNNNMLRHYRTHAFDDKNDDHLENKDDSLYCCPDCGGMFTTTEWEKHKEQHKKKICNECGKIFQFQSELEQHRSVHLNLKVYRDSKTQSYRSTMASPNSSDTNIVVMCEICDSIFPTKEQLKEHKLTHDTKPQSQQIQQVQQQQQQQHDSDVDEHHGARKYVCTICNKSYAGYGGLWEHNRKKHPENKSPYCKDFPKECKPCNKLFYTGGSWYMHKQMHERSRGNLLNIKKQQQQQQQPKLLEKESGSSSPNSQIEEDQADDSESYHTCKRCFKVFSNRYNLKNHMKCHGINPHTATKANLKNKGKKVWCDVCHTPFDSSQQLQQHKSEEHAETEDTMPSLSDEQEEIDVKAPFVFTCDVCVQTFTTKLSLKKHKEKHAQERVMLLNPNKRNTVYCKFCKISFTNSEQLSYHMRQEHETVGRMAKAKEKNKNSVCNICKKPFQSSSALYAHLGWHKRGKIYEQYVPERNPIKVKIKQEPKDDLPQFKCNTCKAVLPNDTALQIHILEKHRDINAIVLPSTRCNMCNLDFTSQDEYEQHKRLHSMVENPRKTFPCNHCPAAFSRIETLNVHLKQYHLGQIKQEYNCPQCNRTFDKQSSLTIHLKVHEKQRMNAPSRPLFSCSICNLGFNLPKDLRAHTIKAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00987314;
- 90% Identity
- -
- 80% Identity
- -