Basic Information

Insect: Melipona quadrifasciata
Gene Symbol: -
Assembly: GCA_001276565.1
Location: KQ435698.1:2011012-2022330[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.7e-05 0.0031 17.5 1.4 1 23 446 468 446 468 0.96

2 18 0.0022 0.19 11.9 1.6 1 20 474 493 474 496 0.94

3 18 9.2e-06 0.00078 19.4 1.4 1 23 502 524 502 524 0.98

4 18 5.3e-05 0.0045 17.0 4.4 1 21 530 550 530 552 0.95

5 18 7.2e-06 0.00061 19.8 5.6 1 23 558 580 558 580 0.99

6 18 1.6e-05 0.0014 18.6 5.3 1 23 586 608 586 608 0.97

7 18 6.2e-05 0.0053 16.8 6.9 1 23 614 636 614 636 0.96

8 18 6.1e-08 5.2e-06 26.3 2.7 1 23 642 664 642 664 0.98

9 18 4.5e-05 0.0038 17.3 6.7 1 23 670 692 670 692 0.97

10 18 1.4e-05 0.0012 18.9 5.8 1 23 698 720 698 720 0.98

11 18 3.7e-07 3.2e-05 23.8 2.9 1 23 726 748 726 748 0.98

12 18 5.5e-06 0.00047 20.1 7.8 1 23 754 776 754 776 0.98

13 18 1.7e-05 0.0015 18.6 9.1 1 23 782 804 782 804 0.98

14 18 2.3e-05 0.0019 18.2 7.5 1 23 810 832 810 832 0.98

15 18 0.0011 0.093 12.9 8.8 1 21 838 858 838 860 0.94

16 18 8.4e-06 0.00071 19.6 0.4 1 23 866 888 866 888 0.98

17 18 0.02 1.7 8.9 4.5 1 23 898 920 898 920 0.98

18 18 3.2e-07 2.7e-05 24.0 1.3 1 23 926 948 926 948 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.7e-05	0.0031	17.5	1.4	1	23	446	468	446	468	0.96
2	18	0.0022	0.19	11.9	1.6	1	20	474	493	474	496	0.94
3	18	9.2e-06	0.00078	19.4	1.4	1	23	502	524	502	524	0.98
4	18	5.3e-05	0.0045	17.0	4.4	1	21	530	550	530	552	0.95
5	18	7.2e-06	0.00061	19.8	5.6	1	23	558	580	558	580	0.99
6	18	1.6e-05	0.0014	18.6	5.3	1	23	586	608	586	608	0.97
7	18	6.2e-05	0.0053	16.8	6.9	1	23	614	636	614	636	0.96
8	18	6.1e-08	5.2e-06	26.3	2.7	1	23	642	664	642	664	0.98
9	18	4.5e-05	0.0038	17.3	6.7	1	23	670	692	670	692	0.97
10	18	1.4e-05	0.0012	18.9	5.8	1	23	698	720	698	720	0.98
11	18	3.7e-07	3.2e-05	23.8	2.9	1	23	726	748	726	748	0.98
12	18	5.5e-06	0.00047	20.1	7.8	1	23	754	776	754	776	0.98
13	18	1.7e-05	0.0015	18.6	9.1	1	23	782	804	782	804	0.98
14	18	2.3e-05	0.0019	18.2	7.5	1	23	810	832	810	832	0.98
15	18	0.0011	0.093	12.9	8.8	1	21	838	858	838	860	0.94
16	18	8.4e-06	0.00071	19.6	0.4	1	23	866	888	866	888	0.98
17	18	0.02	1.7	8.9	4.5	1	23	898	920	898	920	0.98
18	18	3.2e-07	2.7e-05	24.0	1.3	1	23	926	948	926	948	0.97

Sequence Information

Coding Sequence: ATGAACAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAGCAACCAGTCTTGGCAATGTAGGGAGTACCCCGCATTCATCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACCAATCTCTTTCCTGGACCGCTACCTCAGGTCTATCATCATTCCCACCACAACTCCTCACATAGGAGTAGTGGAGGTGGAGAGGCATCTTCCAAAGAGCCAGCCTCTTCATTGAACCAAGAAATGGCGTTAACTTCCAGTTCACATCATCAATCAACACCTACACATCATCATCATCAATCTTCAGTTAGCAGTAGCAGTCATCATAGTTCTTTACAACCAAATTCACAGcaGATACCAGTTTCTCTACCAGGCCTTAATTTAGACGGACCACATATATCTGCCAGCGTCAGTCATTTACAGGCAGCACATGCACAAATGCAGCAACAAATGCAAGCAGCACAACAGCAACAGCTGCATCAACAGCAGCAAccacagcagcagcagcagcagcagcagcaacaatcTCACCATCAAATGCAAAATCATCAAAATGCTCAGAATAGTGGACCAACTGCACATAATCAAAACGCACAGAGAGATGATAATAAAGTGAAAGATGAAGGTGGAAGTTGTACAACTGAACGTTGCAGTGACAATCAGGTTCACTGTCAAGTTCAATGTGACCTCCAGTTACAAACATCTCAGGATTTACAACAAAGTCTTatgcaacagcaacaacagcagcaacagcaacaacaaatTGGTGTGAACATAAGCGGAAATTCATCGAACGAAGGTGGAAGTCAAAATAATACAGAGAAacctgaaaaagaaaaagaattgcgTCAACTAAATATGACGCAGTTTCAAGTGCCAGATTTAAAACCAGGAGGTCATATGATGGATGTAAGAACAGCTGATGGTTCAGTTGTGAAAATCAGTGCTGGAAATGAGCAAGATTTAGCAAAAACACTTGGTGTTGAAATGGTGCAAAATATGTACAAGGTAAATGTCGAGGATATTAATCAACTATTAGCATATCATGAAGTATTTGGAAAGCTACAAAGTGAAATAGCAGCTGGTACAACCTTAGTTGGAAGTACAGTTCCTACTCAAACAGTTACCACTATACAAAATGGAACTCCAATTGTACAACaagttcaattaaataaatttgatattaaatcaAGTGATGGTGAAGCTACACCAGGACCAAGTGCTTCGCCTGTATCAGTTGGAAGTCATGCATGCGAAAtatgtggaaaaatttttcagtttcgcTATCAGCTTATTGTTCATCGTAGATACCATACGGAAAGGAAACCTTTTACTTGTCagGTCTGTGGCAAGGcctttttaaatgcaaatgatTTGACACGGCATGGAAAATGTCATTTAGGTGGATCCATGTTCACTTGTACAGTTTGTTTTCATGTATTTGCAAATGCACCATCTTTGGAACGTCACATGAAACGACATGCTACTGATAAACCATATAATTGTACTGTATGTGGGAAAAGTTTTGCAAGAAAAGAACATTTAGATAACCATACGCGTTGTCATACTGGAGAAACACCTTATAGgtGTCAATATTGTTCAAAGACTTTTACTAGGAAAGAACATATGGTAAATCATGTTCGTAAACATACGGGTGAAACACCTCATCGAtgtgatatttgtaaaaagagCTTTACTCGCAAAGAACATTTTATGAATCATGTTATGTGGCATACAGGAGAAACTCCTCATCATTGCCAAGCTTGTGGCAAGAAATATACACGTAAAGAACATCTCGCAAACCATATGCGTTCACATACCAATGATACACCATTTCGCTGTGAAATATGCGGTAAGTCGTTTACGAGAAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGTGAGACGCCGCACCGCTGTGATTTCTGCTCGAAGACATTCACGCGAAAGGAGCATCTCTTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCTTTTCGCTGTCAATACTGTCCGAAAGCATTTACGCGGAAGGATCATCTGGTGAACCATGTCAGGCAACACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACATCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGAATCCACACCGGTGAATCACCGCATAGGTGTGAATTCTGCCAGAGAACGTTCACCAGGAAAGAACATCTAAATAATCATCTCCGTCAGCACACCGGAGATTCGTCGCATTGTTGTAACGTGTGCTCGAAACCATTTACAAGAAAGGAACATCTCGTAAATCATATGCGATGTCATACTGGTGAACGTCCATTTGTATGCACAGAATGTGGCAAAAGCTTTCCTTTGAAGGGTAACCTGCTTTTCCACATGCGCTCGCACAATAAAGGCAGCAATGCCGAGAGACCGTTTCGCTGCGATCTTTGTCCAAAAGACTTCATGTGCAAAGGACACTTAGTGTCTCACAGACGATCGCATTCGGACGAGCGACCACACAGCTGTCCAGATTGTGGGAAAACATTTGTTGAGAAAGGAAATATGTTGAGACATTTGAGAAAACACGCGGCGGAAGGCCCGCCGACACAAGTCAGCACGCCGTCAGCAATTCCTCAATCCGGTGTTCTGCCGATTCCGGCGGCAGCTGTCCTGGTTGGCCATCCTTTGGCGCCCCCTGCGCCACCTGTAGTCCCACAACACACCGTTGTTGTGCCTACTCCCCCCGGTGTATTGACCTCCTACTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQSSVSSSSHHSSLQPNSQQIPVSLPGLNLDGPHISASVSHLQAAHAQMQQQMQAAQQQQLHQQQQPQQQQQQQQQQSHHQMQNHQNAQNSGPTAHNQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQTSQDLQQSLMQQQQQQQQQQQIGVNISGNSSNEGGSQNNTEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00306423; iTF_00361057; iTF_00360353; iTF_00085602; iTF_00226050; iTF_00303266; iTF_00966146; iTF_00215843; iTF_00228106; iTF_00024747; iTF_00141957; iTF_00084722; iTF_00224691; iTF_00761110; iTF_00230167; iTF_00216536; iTF_00230813; iTF_00225375; iTF_00087360;
80% Identity: -